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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168854637-19780-163296845053.BLASTQ1


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,457,254 sequences; 1,532,736,548 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig1
Length=280

Distribution of 1 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|47027026|gb|AAT08728.1|  polygalacturonase isoenzyme 1 beta...  28.5    7.4
Alignments

>gi|47027026|gb|AAT08728.1|  polygalacturonase isoenzyme 1 beta subunit [Hyacinthus orientalis]
Length=131

 Score = 28.5 bits (62),  Expect = 7.4
 Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 0/19 (0%)
 Frame = -2

Query  87   LTFDTAGLCHGLEICNWIY  31
            +TF T G   GLE+C+W++
Sbjct  102  VTFTTLGFEQGLEVCHWVF  120







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 11, 2007  5:57 PM
  Number of letters in database: 101,016,998
  Number of sequences in database:  283,237
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283237
Number of Hits to DB: 119
Number of extensions: 2
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 280
Length of database: 101016998
Length adjustment: 63
Effective length of query: 217
Effective length of database: 83173067
Effective search space: 2495192010
Effective search space used: 2495192010
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)