Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168856250-11966-155363718187.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,457,254 sequences; 1,532,736,548 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig10 Length=446
Score E Sequences producing significant alignments: (Bits) Value gi|108864390|gb|ABG22487.1| 40S ribosomal protein S5, putativ... 105 5e-23 gi|40748265|gb|AAR89617.1| 40S ribosomal protein S5 [Capsicum an 105 5e-23 gi|115485513|ref|NP_001067900.1| Os11g0482000 [Oryza sativa (... 105 5e-23 gi|6831664|sp|O24111|RS5_NICPL 40S ribosomal protein S5 >gi|1... 105 5e-23 gi|115433960|ref|NP_001041738.1| Os01g0100700 [Oryza sativa (... 105 5e-23 gi|37780996|gb|AAP35042.1| putative 40S ribosomal protein S5 [Vi 103 3e-22 gi|6831665|sp|O65731|RS5_CICAR 40S ribosomal protein S5 >gi|3... 103 3e-22 gi|15228111|ref|NP_181264.1| ATRPS5B (RIBOSOMAL PROTEIN 5B); ... 103 3e-22 gi|116058572|emb|CAL54279.1| Ribosomal protein S7 (ISS) [Ostreoc 102 5e-22 gi|15229897|ref|NP_187800.1| ATRPS5A (RIBOSOMAL PROTEIN 5A); ... 102 5e-22 gi|21617886|gb|AAM66936.1| 40S ribosomal protein S5 [Arabidopsis 100 2e-21 gi|83582438|emb|CAJ45370.1| 40S ribosomal protein S5 [Chlamydomo 99.0 6e-21 gi|1362117|pir||S56705 ribosomal protein S5 homolog - common tob 96.7 3e-20 gi|28193498|emb|CAD28611.1| 40S ribosomal protein s5 [Polytomell 96.3 4e-20 gi|45454190|gb|AAS65782.1| ribosomal protein S7 [Petermannia cir 38.1 0.012 gi|45454186|gb|AAS65779.1| ribosomal protein S7 [Wurmbea pygmaea 38.1 0.012 gi|45454151|gb|AAS65753.1| ribosomal protein S7 [Luzuriaga radic 38.1 0.012 gi|45454139|gb|AAS65744.1| ribosomal protein S7 [Alstroemeria au 38.1 0.012 gi|45454159|gb|AAS65759.1| ribosomal protein S7 [Tripladenia cun 38.1 0.012 gi|37721289|gb|AAN32048.1| ribosomal protein S7 [Iris missourien 38.1 0.012 gi|37721183|gb|AAN31970.1| ribosomal protein S7 [Burmannia capit 38.1 0.012 gi|33338914|gb|AAQ14224.1| ribosomal protein S7 [Rheum x cultoru 38.1 0.012 gi|121720659|ref|YP_001001580.1| ribosomal protein S7 [Nuphar... 37.4 0.021 gi|33338879|gb|AAQ14198.1| ribosomal protein S7 [Ascarina lucida 37.4 0.021 gi|62287243|sp|Q6EM77|RR7_PHYAM Chloroplast 30S ribosomal pro... 37.4 0.021 gi|68052866|sp|Q589A4|RR7_SILLA Chloroplast 30S ribosomal pro... 37.4 0.021 gi|9838363|ref|NP_063975.1| orf155a [Beta vulgaris subsp. vul... 37.4 0.021 gi|45454127|gb|AAS65735.1| ribosomal protein S7 [Doryanthes palm 37.0 0.027 gi|45454085|gb|AAS65704.1| ribosomal protein S7 [Petrosavia sp. 37.0 0.027 gi|45454123|gb|AAS65732.1| ribosomal protein S7 [Agapanthus afri 37.0 0.027 gi|45454108|gb|AAS65721.1| ribosomal protein S7 [Kingia australi 37.0 0.027 gi|45454147|gb|AAS65750.1| ribosomal protein S7 [Campynema linea 37.0 0.027 gi|45454163|gb|AAS65762.1| ribosomal protein S7 [Philesia mag... 37.0 0.027 gi|45454143|gb|AAS65747.1| ribosomal protein S7 [Calochortus ... 37.0 0.027 gi|45454104|gb|AAS65718.1| ribosomal protein S7 [Flagellaria ind 37.0 0.027 gi|116617153|ref|YP_817528.1| ribosomal protein S7 [Coffea ar... 37.0 0.027 gi|114330016|ref|YP_740697.1| ribosomal protein S7 [Nandina d... 37.0 0.027 gi|114329701|ref|YP_740522.1| ribosomal protein S7 [Citrus si... 37.0 0.027 gi|91984038|ref|YP_567124.1| ribosomal protein S7 [Vitis vini... 37.0 0.027 gi|66865839|gb|AAY57520.1| ribosomal protein S7 [Lactuca sativa] 37.0 0.027 gi|37721265|gb|AAN32031.1| ribosomal protein S7 [Blandfordia pun 37.0 0.027 gi|37721215|gb|AAN31994.1| ribosomal protein S7 [Ensete ventrico 37.0 0.027 gi|37721187|gb|AAN31973.1| ribosomal protein S7 [Narthecium ossi 37.0 0.027 gi|37721199|gb|AAN31982.1| ribosomal protein S7 [Anticlea elegan 37.0 0.027 gi|37721191|gb|AAN31976.1| ribosomal protein S7 [Japonolirion... 37.0 0.027 gi|37721235|gb|AAN32009.1| ribosomal protein S7 [Roystonea princ 37.0 0.027 gi|37721333|gb|AAN32081.1| ribosomal protein S7 [Chlorophytum co 37.0 0.027 gi|34333491|gb|AAQ64532.1| ribosomal protein S7 [Mahonia aquifol 37.0 0.027 gi|34333512|gb|AAQ64548.1| ribosomal protein S7 [Hernandia pelta 37.0 0.027 gi|34333542|gb|AAQ64570.1| ribosomal protein S7 [Pittosporum ver 37.0 0.027 gi|115605068|ref|YP_784520.1| ribosomal protein S7 [Piper cen... 37.0 0.027 gi|33338887|gb|AAQ14204.1| ribosomal protein S7 [Chloranthus jap 37.0 0.027 gi|52220856|ref|YP_087012.1| ribosomal protein S7 [Panax gins... 37.0 0.027 gi|62287228|sp|Q67IL8|RR7_ANACO Chloroplast 30S ribosomal pro... 37.0 0.027 gi|62287224|sp|Q67IC5|RR7_ASPOF Chloroplast 30S ribosomal pro... 37.0 0.027 gi|68052921|sp|Q67ID1|RR7_ALLTE Chloroplast 30S ribosomal pro... 37.0 0.027 gi|62287226|sp|Q67IG9|RR7_COECR Chloroplast 30S ribosomal pro... 37.0 0.027 gi|62287247|sp|Q6EM99|RR7_EUOAL Chloroplast 30S ribosomal pro... 37.0 0.027 gi|62287248|sp|Q6EMA2|RR7_CORMA Chloroplast 30S ribosomal pro... 37.0 0.027 gi|62287249|sp|Q6EMA4|RR7_CANWI Chloroplast 30S ribosomal pro... 37.0 0.027 gi|62287241|sp|Q6EM62|RR7_SARHE Chloroplast 30S ribosomal pro... 37.0 0.027 gi|62287174|sp|Q6KGX3|RR7_PEA Chloroplast 30S ribosomal prote... 37.0 0.027 gi|62287291|sp|Q71T50|RR7_HYDCA Chloroplast 30S ribosomal pro... 37.0 0.027 gi|62287272|sp|Q6KGW4|RR7_SCHCH Chloroplast 30S ribosomal pro... 37.0 0.027 gi|24638194|sp|Q9GFL8|RR7_DIOBU Chloroplast 30S ribosomal pro... 37.0 0.027 gi|24638192|sp|Q9GFK3|RR7_SAUCE Chloroplast 30S ribosomal pro... 37.0 0.027 gi|17367690|sp|Q9GFM9|RR7_CABCA Chloroplast 30S ribosomal pro... 37.0 0.027 gi|17367679|sp|Q9GFK0|RR7_TROAR Chloroplast 30S ribosomal pro... 37.0 0.027 gi|114107092|ref|YP_740248.1| ribosomal protein S7 [Liriodend... 37.0 0.027 gi|17367684|sp|Q9GFM3|RR7_CERDE Chloroplast 30S ribosomal pro... 37.0 0.027 gi|82754670|gb|ABB90084.1| ribosomal protein S7 [Solanum tube... 37.0 0.027 gi|108802686|ref|YP_636344.1| ribosomal protein S7 [Eucalyptu... 37.0 0.027 gi|62287227|sp|Q67II8|RR7_TYPAN Chloroplast 30S ribosomal pro... 37.0 0.027 gi|62287274|sp|Q6KGX6|RR7_MAGST Chloroplast 30S ribosomal pro... 37.0 0.027 gi|11497570|ref|NP_054978.1| ribosomal protein S7 [Spinacia o... 37.0 0.027 gi|7525079|ref|NP_051104.1| ribosomal protein S7 [Arabidopsis... 37.0 0.027 gi|91214185|ref|YP_538809.1| ribosomal protein S7 [Glycine ma... 37.0 0.027 gi|13518482|ref|NP_084841.1| ribosomal protein S7 [Lotus corn... 37.0 0.027 gi|11466006|ref|NP_054548.1| ribosomal protein S7 [Nicotiana ... 37.0 0.027 gi|32480889|ref|NP_862800.1| ribosomal protein S7 [Calycanthu... 37.0 0.027 gi|45454182|gb|AAS65776.1| ribosomal protein S7 [Trillium grandi 36.6 0.035 gi|45454131|gb|AAS65738.1| ribosomal protein S7 [Pandanus cop... 36.6 0.035 gi|114804309|ref|YP_762306.1| ribosomal protein S7 [Morus ind... 36.6 0.035 gi|110227124|ref|YP_665603.1| ribosomal protein S7 [Populus a... 36.6 0.035 gi|37721195|gb|AAN31979.1| ribosomal protein S7 [Stemona tuberos 36.6 0.035 gi|62287246|sp|Q6EM90|RR7_HOUCO Chloroplast 30S ribosomal pro... 36.6 0.035 gi|78103294|ref|YP_358630.1| ribosomal protein S7 [Phalaenops... 36.6 0.035 gi|464722|sp|P34832|RR7_CUSRE Plastid 30S ribosomal protein S... 36.6 0.035 gi|91208860|ref|YP_539021.1| ribosomal protein S7 [Physcomitr... 36.2 0.046 gi|48476035|gb|AAP29434.2| ribosomal protein S7 [Adiantum capill 36.2 0.046 gi|49574634|ref|NP_848123.2| ribosomal protein S7 [Adiantum c... 36.2 0.046 gi|62287245|sp|Q6EM87|RR7_HYDMC Chloroplast 30S ribosomal pro... 36.2 0.046 gi|34500960|ref|NP_904145.1| ribosomal protein S7 [Amborella ... 36.2 0.046 gi|94502536|ref|YP_588163.1| ribosomal protein S7 [Helianthus... 35.8 0.060 gi|37721179|gb|AAN31967.1| ribosomal protein S7 [Tofieldia gluti 35.8 0.060 gi|37721175|gb|AAN31964.1| ribosomal protein S7 [Scheuchzeria... 35.8 0.060 gi|62287229|sp|Q67IP2|RR7_BUTUM Chloroplast 30S ribosomal pro... 35.8 0.060 gi|68052959|sp|Q6KGV8|RR7_SPAWA Chloroplast 30S ribosomal pro... 35.8 0.060 gi|75755705|ref|YP_319809.1| ribosomal protein S7 [Acorus cal... 35.8 0.060 gi|50346830|ref|YP_053201.1| ribosomal protein S7 [Nymphaea a... 35.8 0.060
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 11, 2007 5:57 PM Number of letters in database: 101,016,998 Number of sequences in database: 283,237 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283237 Number of Hits to DB: 255 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 446 Length of database: 101016998 Length adjustment: 103 Effective length of query: 343 Effective length of database: 71843587 Effective search space: 3232961415 Effective search space used: 3232961415 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 62 (28.5 bits)
