RID=1168857268-347-197415043112.BLASTQ1, Contig25

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168857268-347-197415043112.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,457,254 sequences; 1,532,736,548 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig25
Length=321

Distribution of 20 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|115453043|ref|NP_001050122.1|  Os03g0352300 [Oryza sativa (...   112    4e-25 
gi|15223458|ref|NP_176007.1|  NOP56 [Arabidopsis thaliana] >gi...   105    6e-23 
gi|115473885|ref|NP_001060541.1|  Os07g0661800 [Oryza sativa (...   104    8e-23 
gi|110741586|dbj|BAE98741.1|  putative nucleolar protein [Arabido   100    2e-21
gi|42564104|ref|NP_187892.2|  unknown protein [Arabidopsis tha...   100    2e-21 
gi|92873598|gb|ABE82021.1|  Pre-mRNA processing ribonucleoprot...  99.4    3e-21
gi|116059078|emb|CAL54785.1|  Ribosome biogenesis protein-Nop5...  70.1    2e-12
gi|84468374|dbj|BAE71270.1|  putative fibrillarin homolog [Trifol  40.0    0.002
gi|25083410|gb|AAN72071.1|  SAR DNA-binding protein - like [Arabi  31.6    0.86  
gi|15240445|ref|NP_198064.1|  DNA binding [Arabidopsis thalian...  31.6    0.86  
gi|2811028|sp|O04658|Y5712_ARATH  Hypothetical protein At5g271...  31.6    0.86 
gi|2246450|gb|AAB62581.1|  3-hydroxy-3-methylglutaryl CoA redu...  30.4    1.9  
gi|1346298|sp|P48022|HMDH2_LYCES  3-hydroxy-3-methylglutaryl-c...  30.4    1.9  
gi|21554119|gb|AAM63199.1|  30S ribosomal protein S16 [Arabidopsi  29.3    4.3   
gi|15241991|ref|NP_200504.1|  structural constituent of riboso...  29.3    4.3   
gi|34395119|dbj|BAC84835.1|  hypothetical protein [Oryza sativa (  28.9    5.6   
gi|115453023|ref|NP_001050112.1|  Os03g0350100 [Oryza sativa (...  28.1    9.5   
gi|108708130|gb|ABF95925.1|  Nucleolar protein NOP5, putative,...  28.1    9.5  
gi|115453025|ref|NP_001050113.1|  Os03g0350300 [Oryza sativa (...  28.1    9.5   
gi|3288883|dbj|BAA31260.1|  SAR DNA binding protein [Oryza sativa  28.1    9.5

Alignments

 

>gi|115453043|ref|NP_001050122.1|  Os03g0352300 [Oryza sativa (japonica cultivar-group)]
 gi|108708152|gb|ABF95947.1|  Nucleolar protein Nop56, putative, expressed [Oryza sativa (japonica 
cultivar-group)]
 gi|113548593|dbj|BAF12036.1|  Os03g0352300 [Oryza sativa (japonica cultivar-group)]
Length=552

 Score =  112 bits (280),  Expect = 4e-25
 Identities = 55/67 (82%), Positives = 60/67 (89%), Gaps = 0/67 (0%)
 Frame = +1

Query  121  MALYLLFESASGYSLFHAYGLDEIGQNTEAVRNSVLDLTRFGKVVKLVAFHPFSSALDAL  300
            MALYLLFESASGY LFHAYG+DEIGQ+ +AVR SV+DL RFGK VKL AF PFSSA+DAL
Sbjct  1    MALYLLFESASGYGLFHAYGIDEIGQSVDAVRASVVDLDRFGKAVKLAAFTPFSSAVDAL  60

Query  301  NQCNAIS  321
            NQCNAIS
Sbjct  61   NQCNAIS  67


>gi|15223458|ref|NP_176007.1|  NOP56 [Arabidopsis thaliana]
 gi|6056371|gb|AAF02835.1|AC009894_6  nucleolar protein [Arabidopsis thaliana]
 gi|11878189|gb|AAG40838.1|AF302492_1  NOP56-like protein [Arabidopsis thaliana]
 gi|14517412|gb|AAK62596.1|  At1g56110/T6H22_9 [Arabidopsis thaliana]
 gi|20857405|gb|AAM26718.1|  At1g56110/T6H22_9 [Arabidopsis thaliana]
 gi|21592692|gb|AAM64641.1|  SAR DNA binding protein, putative [Arabidopsis thaliana]
Length=522

 Score =  105 bits (261),  Expect = 6e-23
 Identities = 49/67 (73%), Positives = 59/67 (88%), Gaps = 0/67 (0%)
 Frame = +1

Query  121  MALYLLFESASGYSLFHAYGLDEIGQNTEAVRNSVLDLTRFGKVVKLVAFHPFSSALDAL  300
            MA+Y+++ES+SGY LF  +GLDEIGQNTEAVR SV DL+RFG+VV+L AFHPF SALDAL
Sbjct  1    MAMYVIYESSSGYGLFEVHGLDEIGQNTEAVRTSVSDLSRFGRVVQLTAFHPFESALDAL  60

Query  301  NQCNAIS  321
            NQ NA+S
Sbjct  61   NQVNAVS  67


>gi|115473885|ref|NP_001060541.1|  Os07g0661800 [Oryza sativa (japonica cultivar-group)]
 gi|34395308|dbj|BAC84317.1|  putative nucleolar protein [Oryza sativa (japonica cultivar-group)]
 gi|113612077|dbj|BAF22455.1|  Os07g0661800 [Oryza sativa (japonica cultivar-group)]
Length=313

 Score =  104 bits (260),  Expect = 8e-23
 Identities = 51/67 (76%), Positives = 57/67 (85%), Gaps = 0/67 (0%)
 Frame = +1

Query  121  MALYLLFESASGYSLFHAYGLDEIGQNTEAVRNSVLDLTRFGKVVKLVAFHPFSSALDAL  300
            MALYLLFESASGY+LFHA+G+DEIGQ  +A R SVL+L RF K VKL  F PFSSA+DAL
Sbjct  1    MALYLLFESASGYALFHAHGVDEIGQGVDAARASVLELQRFSKAVKLAGFSPFSSAVDAL  60

Query  301  NQCNAIS  321
            NQCNAIS
Sbjct  61   NQCNAIS  67


>gi|110741586|dbj|BAE98741.1|  putative nucleolar protein [Arabidopsis thaliana]
Length=465

 Score =  100 bits (249),  Expect = 2e-21
 Identities = 49/67 (73%), Positives = 56/67 (83%), Gaps = 0/67 (0%)
 Frame = +1

Query  121  MALYLLFESASGYSLFHAYGLDEIGQNTEAVRNSVLDLTRFGKVVKLVAFHPFSSALDAL  300
            M +YLL ES SGY LF  +G DEIGQNTEAVR+SV DL+RFG+VV+L AFHPF SALDAL
Sbjct  1    MKIYLLSESPSGYGLFEGHGSDEIGQNTEAVRSSVSDLSRFGRVVQLTAFHPFQSALDAL  60

Query  301  NQCNAIS  321
            NQ NA+S
Sbjct  61   NQINAVS  67


>gi|42564104|ref|NP_187892.2|  unknown protein [Arabidopsis thaliana]
 gi|11994428|dbj|BAB02430.1|  nucleolar protein [Arabidopsis thaliana]
Length=499

 Score =  100 bits (249),  Expect = 2e-21
 Identities = 49/67 (73%), Positives = 56/67 (83%), Gaps = 0/67 (0%)
 Frame = +1

Query  121  MALYLLFESASGYSLFHAYGLDEIGQNTEAVRNSVLDLTRFGKVVKLVAFHPFSSALDAL  300
            M +YLL ES SGY LF  +G DEIGQNTEAVR+SV DL+RFG+VV+L AFHPF SALDAL
Sbjct  1    MKIYLLSESPSGYGLFEGHGSDEIGQNTEAVRSSVSDLSRFGRVVQLTAFHPFQSALDAL  60

Query  301  NQCNAIS  321
            NQ NA+S
Sbjct  61   NQINAVS  67


>gi|92873598|gb|ABE82021.1|  Pre-mRNA processing ribonucleoprotein, binding region [Medicago 
truncatula]
Length=524

 Score = 99.4 bits (246),  Expect = 3e-21
 Identities = 48/67 (71%), Positives = 60/67 (89%), Gaps = 0/67 (0%)
 Frame = +1

Query  121  MALYLLFESASGYSLFHAYGLDEIGQNTEAVRNSVLDLTRFGKVVKLVAFHPFSSALDAL  300
            MAL+LL E+A GY+LF A+G+DEIGQNTEAVRNSV DL+RFGKVVKL +F+PF+SAL++L
Sbjct  1    MALFLLHETALGYALFEAHGIDEIGQNTEAVRNSVTDLSRFGKVVKLRSFNPFTSALESL  60

Query  301  NQCNAIS  321
             Q NA+S
Sbjct  61   EQINAVS  67


>gi|116059078|emb|CAL54785.1|  Ribosome biogenesis protein-Nop56p/Sik1p (ISS) [Ostreococcus 
tauri]
Length=326

 Score = 70.1 bits (170),  Expect = 2e-12
 Identities = 34/67 (50%), Positives = 45/67 (67%), Gaps = 0/67 (0%)
 Frame = +1

Query  121  MALYLLFESASGYSLFHAYGLDEIGQNTEAVRNSVLDLTRFGKVVKLVAFHPFSSALDAL  300
            MA ++LFESASGY LF    +D +GQ+ E V+    D  +FGK+VKL  F PF+SA +AL
Sbjct  1    MAQFVLFESASGYGLFETLDVDVVGQSLEKVQEQTQDAGKFGKMVKLHGFKPFTSAANAL  60

Query  301  NQCNAIS  321
             Q N +S
Sbjct  61   EQINCVS  67


>gi|84468374|dbj|BAE71270.1|  putative fibrillarin homolog [Trifolium pratense]
Length=475

 Score = 40.0 bits (92),  Expect = 0.002
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
 Frame = +1

Query  28   PPKPQMKTRGEGENKP*--DRNLLLVEGSLGRAMA-----LYLLFESASGYSLFHAYGLD  186
            P +P +    + E +P    +N  L  G + RA       L+   E A+GY+LF A G++
Sbjct  28   PKRPYLGREKKLEVQPIAPSKNGELTIGDIARARGREVFPLHFFVECATGYALFLARGIN  87

Query  187  EIGQNTEAVRNSVLDLTRFGKVVKLVAFHPFSSALDALNQCNAIS  321
            +I  N        ++  R     +L A+ PFSS  +AL Q NAIS
Sbjct  88   DIDMNKYQPAEEYIN--RSDTPFELKAYLPFSSLGEALLQMNAIS  130


>gi|25083410|gb|AAN72071.1|  SAR DNA-binding protein - like [Arabidopsis thaliana]
Length=423

 Score = 31.6 bits (70),  Expect = 0.86
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query  127  LYLLFESASGYSLFHAYGLDEIGQNTEAVRNSVLDLTRFGKVVKLVAFHPFSSALDAL  300
            + +LFE+  G+++F      ++  N E + N         K+VKLVAF  F +  +AL
Sbjct  1    MLILFETPGGFAIFKVLNEGKLS-NVEDLGNEFSTAKLARKMVKLVAFDKFDNTAEAL  57


>gi|15240445|ref|NP_198064.1|  DNA binding [Arabidopsis thaliana]
 gi|11878185|gb|AAG40836.1|AF302490_1  NOP58-like protein F108 [Arabidopsis thaliana]
 gi|18377656|gb|AAL66978.1|  putative SAR DNA-binding protein [Arabidopsis thaliana]
 gi|20465699|gb|AAM20318.1|  putative SAR DNA-binding protein [Arabidopsis thaliana]
Length=533

 Score = 31.6 bits (70),  Expect = 0.86
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query  127  LYLLFESASGYSLFHAYGLDEIGQNTEAVRNSVLDLTRFGKVVKLVAFHPFSSALDAL  300
            + +LFE+  G+++F      ++  N E + N         K+VKLVAF  F +  +AL
Sbjct  1    MLILFETPGGFAIFKVLNEGKLS-NVEDLGNEFSTAKLARKMVKLVAFDKFDNTAEAL  57


>gi|2811028|sp|O04658|Y5712_ARATH  Hypothetical protein At5g27120
 gi|2191188|gb|AAB61073.1|  similar to S. cerevisiae SIK1P (PID:g984964) [Arabidopsis thaliana]
Length=439

 Score = 31.6 bits (70),  Expect = 0.86
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query  127  LYLLFESASGYSLFHAYGLDEIGQNTEAVRNSVLDLTRFGKVVKLVAFHPFSSALDAL  300
            + +LFE+  G+++F      ++  N E + N         K+VKLVAF  F +  +AL
Sbjct  1    MLILFETPGGFAIFKVLNEGKLS-NVEDLGNEFSTAKLARKMVKLVAFDKFDNTAEAL  57


>gi|2246450|gb|AAB62581.1|  3-hydroxy-3-methylglutaryl CoA reductase 2 [Lycopersicon esculentum]
Length=601

 Score = 30.4 bits (67),  Expect = 1.9
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
 Frame = +1

Query  28   PPKPQMKTRGEGENKP*DRNLLLVEGSLGRAMALYLLFESASGYSLFHAYGLDEIGQNTE  207
            P KP  K + + E    D+N LL++ S    + LYL   +   +++F +     + +  E
Sbjct  23   PLKPHKKQQQQQE----DKNTLLIDASDALPLPLYL--TNGLFFTMFFSVMYFLLSRWRE  76

Query  208  AVRNS----VLDLTRFGKVVKLVA  267
             +RNS    V+ L+  G +V L+A
Sbjct  77   KIRNSTPLHVVTLSELGAIVSLIA  100


>gi|1346298|sp|P48022|HMDH2_LYCES  3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 (HMG-CoA reductase 
2)
 gi|170452|gb|AAA34169.1|  3-hydroxy-3-methylglutaryl coenzyme A reductase
Length=602

 Score = 30.4 bits (67),  Expect = 1.9
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
 Frame = +1

Query  28   PPKPQMKTRGEGENKP*DRNLLLVEGSLGRAMALYLLFESASGYSLFHAYGLDEIGQNTE  207
            P KP  K + + E    D+N LL++ S    + LYL   +   +++F +     + +  E
Sbjct  23   PLKPHKKQQQQQE----DKNTLLIDASDALPLPLYLT-TNGLFFTMFFSVMYFLLSRWRE  77

Query  208  AVRNS----VLDLTRFGKVVKLVA  267
             +RNS    V+ L+  G +V L+A
Sbjct  78   KIRNSTPLHVVTLSELGAIVSLIA  101


>gi|21554119|gb|AAM63199.1|  30S ribosomal protein S16 [Arabidopsis thaliana]
Length=135

 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query  119  ARPSEPSTRRRLRS*GLFSPSPLVFIWGFGGAREEK  12
            A+PS+P  R   RS GL  P P+V +   GGAR+ +
Sbjct  67   AQPSDPVQRLLFRS-GLLPPPPMVAMGRKGGARDTR  101


>gi|15241991|ref|NP_200504.1|  structural constituent of ribosome [Arabidopsis thaliana]
 gi|8777434|dbj|BAA97024.1|  30S ribosomal protein S16 [Arabidopsis thaliana]
 gi|14334472|gb|AAK59434.1|  putative 30S ribosomal protein S16 [Arabidopsis thaliana]
 gi|16323518|gb|AAL15253.1|  putative 30S ribosomal protein S16 [Arabidopsis thaliana]
Length=135

 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query  119  ARPSEPSTRRRLRS*GLFSPSPLVFIWGFGGAREEK  12
            A+PS+P  R   RS GL  P P+V +   GGAR+ +
Sbjct  67   AQPSDPVQRLLFRS-GLLPPPPMVAMGRKGGARDTR  101


>gi|34395119|dbj|BAC84835.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=770

 Score = 28.9 bits (63),  Expect = 5.6
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -2

Query  137  RR*SAIARPSEPSTRRRLR---S*GLFSPSPLVFIWGFGGAR  21
            RR  A A P  P  RRR R   S G +S +P++   G+GG R
Sbjct  609  RRPRAAAPPPSPPHRRRRRRGGSDGPYSAAPVLVPLGYGGGR  650


>gi|115453023|ref|NP_001050112.1|  Os03g0350100 [Oryza sativa (japonica cultivar-group)]
 gi|113548583|dbj|BAF12026.1|  Os03g0350100 [Oryza sativa (japonica cultivar-group)]
Length=556

 Score = 28.1 bits (61),  Expect = 9.5
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = +1

Query  127  LYLLFESASGYSLFHAYGLDEIGQNTEAVRN-SVLDLTRFGKVVKLVAFHPFSSALDALN  303
            + +LFE+ +G++LF      ++ +  +  +  +  D  R  KVV+L AF+ F +  DAL+
Sbjct  1    MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTTSDSAR--KVVELKAFNKFENTSDALS  58

Query  304  QCNAI  318
                I
Sbjct  59   AATLI  63


>gi|108708130|gb|ABF95925.1|  Nucleolar protein NOP5, putative, expressed [Oryza sativa (japonica 
cultivar-group)]
 gi|108708131|gb|ABF95926.1|  Nucleolar protein NOP5, putative, expressed [Oryza sativa (japonica 
cultivar-group)]
 gi|108708132|gb|ABF95927.1|  Nucleolar protein NOP5, putative, expressed [Oryza sativa (japonica 
cultivar-group)]
Length=568

 Score = 28.1 bits (61),  Expect = 9.5
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = +1

Query  127  LYLLFESASGYSLFHAYGLDEIGQNTEAVRN-SVLDLTRFGKVVKLVAFHPFSSALDALN  303
            + +LFE+ +G++LF      ++ +  +  +  +  D  R  KVV+L AF+ F +  DAL+
Sbjct  1    MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTTSDSAR--KVVELKAFNKFENTSDALS  58

Query  304  QCNAI  318
                I
Sbjct  59   AATLI  63


>gi|115453025|ref|NP_001050113.1|  Os03g0350300 [Oryza sativa (japonica cultivar-group)]
 gi|108708133|gb|ABF95928.1|  Nucleolar protein NOP5, putative, expressed [Oryza sativa (japonica 
cultivar-group)]
 gi|113548584|dbj|BAF12027.1|  Os03g0350300 [Oryza sativa (japonica cultivar-group)]
Length=568

 Score = 28.1 bits (61),  Expect = 9.5
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = +1

Query  127  LYLLFESASGYSLFHAYGLDEIGQNTEAVRN-SVLDLTRFGKVVKLVAFHPFSSALDALN  303
            + +LFE+ +G++LF      ++ +  +  +  +  D  R  KVV+L AF+ F +  DAL+
Sbjct  1    MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTTSDSAR--KVVELKAFNKFENTSDALS  58

Query  304  QCNAI  318
                I
Sbjct  59   AATLI  63


>gi|3288883|dbj|BAA31260.1|  SAR DNA binding protein [Oryza sativa]
Length=485

 Score = 28.1 bits (61),  Expect = 9.5
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = +1

Query  127  LYLLFESASGYSLFHAYGLDEIGQNTEAVRN-SVLDLTRFGKVVKLVAFHPFSSALDALN  303
            + +LFE+ +G++LF      ++ +  +  +  +  D  R  KVV+L AF+ F +  DAL+
Sbjct  1    MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTTSDSAR--KVVELKAFNKFENTSDALS  58

Query  304  QCNAI  318
                I
Sbjct  59   AATLI  63

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 11, 2007  5:57 PM
  Number of letters in database: 101,016,998
  Number of sequences in database:  283,237
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283237
Number of Hits to DB: 201
Number of extensions: 1
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 321
Length of database: 101016998
Length adjustment: 76
Effective length of query: 245
Effective length of database: 79490986
Effective search space: 2464220566
Effective search space used: 2464220566
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)