Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168857989-18259-22733863187.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,457,254 sequences; 1,532,736,548 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig40 Length=390
Score E Sequences producing significant alignments: (Bits) Value gi|47026900|gb|AAT08672.1| ribosomal protein L19 [Hyacinthus ori 193 4e-50 gi|115452901|ref|NP_001050051.1| Os03g0337800 [Oryza sativa (... 191 1e-49 gi|40287526|gb|AAR83877.1| 60S ribosomal protein L19 [Capsicum a 190 3e-49 gi|92878290|gb|ABE84969.1| Ribosomal protein L19e [Medicago trun 190 3e-49 gi|32401377|gb|AAP80858.1| ribosomal protein L19 [Triticum aesti 191 3e-49 gi|83284003|gb|ABC01909.1| 60S ribosomal protein L19-like protei 190 3e-49 gi|115453895|ref|NP_001050548.1| Os03g0579300 [Oryza sativa (... 190 3e-49 gi|15228314|ref|NP_188300.1| structural constituent of riboso... 181 2e-46 gi|15218602|ref|NP_171777.1| EMB2386; structural constituent ... 177 2e-45 gi|18087585|gb|AAL58923.1|AF462835_1 At1g02780/T14P4_3 [Arabidop 175 7e-45 gi|15235290|ref|NP_192132.1| structural constituent of riboso... 174 2e-44 gi|7440943|pir||T01426 ribosomal protein L19.T2H3.3 - Arabido... 174 2e-44 gi|7440944|pir||T03648 probable ribosomal protein L19 - maize (f 112 4e-25 gi|1350677|sp|Q08066|RL19_MAIZE 60S ribosomal protein L19 112 4e-25 gi|475257|gb|AAA18552.1| putative ribosomal protein L19 [Zea may 111 7e-25 gi|116058908|emb|CAL54615.1| 60s ribosomal protein L19 (ISS) [Os 110 2e-24 gi|121489789|emb|CAK18866.1| 60 S ribosomal protein L19 precurso 61.2 7e-11 gi|115470543|ref|NP_001058870.1| Os07g0142300 [Oryza sativa (... 33.1 0.30 gi|115470545|ref|NP_001058871.1| Os07g0142500 [Oryza sativa (... 32.0 0.67 gi|22550352|ref|NP_689383.1| ribosomal protein S1 [Chaetospha... 31.6 0.87 gi|115470541|ref|NP_001058869.1| Os07g0142200 [Oryza sativa (... 31.6 0.87 gi|51969318|dbj|BAD43351.1| probable ribosomal protein [Arabi... 29.6 1.1 gi|50726397|dbj|BAD34008.1| hypothetical protein [Oryza sativ... 31.2 1.1 gi|42407862|dbj|BAD09004.1| early nodulin 75 precursor-like p... 31.2 1.1 gi|52353533|gb|AAU44099.1| putative polyprotein [Oryza sativa (j 30.8 1.5 gi|115457556|ref|NP_001052378.1| Os04g0286500 [Oryza sativa (... 30.4 1.9 gi|110288928|gb|ABB47260.2| transposon protein, putative, CAC... 30.0 2.5 gi|92874712|gb|ABE82931.1| hypothetical protein MtrDRAFT_AC13... 30.0 2.5 gi|19386691|dbj|BAB86073.1| putative FH protein NFH2 [Oryza s... 30.0 2.5 gi|15217299|gb|AAK92643.1|AC079634_4 Hypothetical protein [Oryza 30.0 2.5 gi|115476674|ref|NP_001061933.1| Os08g0447600 [Oryza sativa (... 29.6 3.3 gi|110741802|dbj|BAE98844.1| formin-like protein AHF1 [Arabidops 29.6 3.3 gi|50080331|gb|AAT69665.1| hypothetical protein [Oryza sativa (j 29.6 3.3 gi|51091595|dbj|BAD36357.1| hypothetical protein [Oryza sativa ( 29.6 3.3 gi|15230845|ref|NP_189177.1| AFH1 (FORMIN HOMOLOGY 1); actin ... 29.6 3.3 gi|51849608|dbj|BAD42331.1| DNA helicase RecG [Nannochloris baci 29.3 4.3 gi|62701930|gb|AAX93003.1| Amidase, putative [Oryza sativa (japo 28.9 5.7 gi|11994160|dbj|BAB01189.1| unnamed protein product [Arabidopsis 28.5 7.4 gi|112363410|gb|ABI16029.1| Dof27 [Glycine max] 28.5 7.4 gi|30688566|ref|NP_850638.1| metal ion binding [Arabidopsis t... 28.5 7.4 gi|115477557|ref|NP_001062374.1| Os08g0539100 [Oryza sativa (... 28.5 7.4 gi|116061155|emb|CAL56543.1| ATP-dependent RNA helicase (ISS) [O 28.1 9.7 gi|2244994|emb|CAB10414.1| isp4 like protein [Arabidopsis tha... 28.1 9.7 gi|15451020|gb|AAK96781.1| Unknown protein [Arabidopsis thaliana 28.1 9.7 gi|25083021|gb|AAN72034.1| isp4 like protein [Arabidopsis thalia 28.1 9.7 gi|115489484|ref|NP_001067229.1| Os12g0606100 [Oryza sativa (... 28.1 9.7 gi|18414644|ref|NP_567493.1| ATOPT3 (OLIGOPEPTIDE TRANSPORTER... 28.1 9.7 gi|67460720|sp|O23482|OPT3_ARATH Probable oligopeptide transport 28.1 9.7 gi|52076182|dbj|BAD46722.1| hypothetical protein [Oryza sativa ( 28.1 9.7 gi|115446409|ref|NP_001046984.1| Os02g0523300 [Oryza sativa (... 28.1 9.7 gi|38636855|dbj|BAD03121.1| myb family protein-like [Oryza sa... 28.1 9.7
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 11, 2007 5:57 PM Number of letters in database: 101,016,998 Number of sequences in database: 283,237 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283237 Number of Hits to DB: 251 Number of extensions: 2 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 390 Length of database: 101016998 Length adjustment: 96 Effective length of query: 294 Effective length of database: 73826246 Effective search space: 2510092364 Effective search space used: 2510092364 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)