Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168858180-13233-92431057300.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,457,254 sequences; 1,532,736,548 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig42 Length=453
Score E Sequences producing significant alignments: (Bits) Value gi|68160568|gb|AAY86773.1| polyubiquitin [Thlaspi caerulescens] 260 1e-69 gi|116312012|emb|CAJ86369.1| OSIGBa0117N13.13 [Oryza sativa (... 260 1e-69 gi|116060737|emb|CAL57215.1| Ubiquitin/60s ribosomal protein ... 260 1e-69 gi|115187323|gb|ABI84246.1| polyubiquitin 10 [Arachis hypogaea] 260 1e-69 gi|115460714|ref|NP_001053957.1| Os04g0628100 [Oryza sativa (... 260 1e-69 gi|110736490|dbj|BAF00213.1| polyubiquitin 4 UBQ4 [Arabidopsis t 260 1e-69 gi|93278214|gb|ABF06579.1| polyubiquitin [Gladiolus grandiflorus 260 1e-69 gi|61223100|gb|AAX40652.1| polyubiquitin [Oryza sativa (japonica 260 1e-69 gi|40287484|gb|AAR83856.1| hexameric polyubiquitin 6PU11 [Capsic 260 1e-69 gi|39939489|gb|AAR32784.1| polyubiquitin [Clusia minor] 260 1e-69 gi|30523391|gb|AAP31578.1| ubiquitin [Hevea brasiliensis] 260 1e-69 gi|29836445|gb|AAM78180.1| putative polyubiquitin [Gossypium ... 260 1e-69 gi|28394784|gb|AAO42469.1| putative polyubiquitin [Arabidopsis l 260 1e-69 gi|755763|emb|CAA27751.1| unnamed protein product [Hordeum vulga 260 1e-69 gi|1332579|emb|CAA66667.1| polyubiquitin [Pinus sylvestris] 260 1e-69 gi|312160|emb|CAA51679.1| ubiquitin [Solanum lycopersicum] 260 1e-69 gi|21592581|gb|AAM64530.1| ubiquitin homolog [Arabidopsis thalia 260 1e-69 gi|14596193|gb|AAK68824.1| Unknown protein [Arabidopsis thaliana 260 1e-69 gi|18824|emb|CAA40324.1| hexaubiquitin protein [Helianthus an... 260 1e-69 gi|16660462|gb|AAL27564.1|AF429430_1 polyubiquitin OUB2 [Olea eu 260 1e-69 gi|4115337|gb|AAD03343.1| ubiquitin [Pisum sativum] 260 1e-69 gi|28436481|gb|AAO43307.1| putative polyubiquitin [Arabidopsis t 260 1e-69 gi|3126967|gb|AAC16012.1| polyubiquitin [Elaeagnus umbellata] 260 1e-69 gi|16071|emb|CAA48140.1| ubiquitin [Antirrhinum majus] 260 1e-69 gi|15982787|gb|AAL09741.1| AT4g05320/C17L7_240 [Arabidopsis thal 260 1e-69 gi|30680052|ref|NP_849299.1| UBQ10 (POLYUBIQUITIN 10); protei... 260 1e-69 gi|18803|emb|CAA40323.1| polyubiquitin protein [Helianthus annuu 260 1e-69 gi|602076|emb|CAA54603.1| pentameric polyubiquitin [Nicotiana ta 260 1e-69 gi|23397122|gb|AAN31845.1| putative polyubiquitin (UBQ10) [Arabi 260 1e-69 gi|16660459|gb|AAL27563.1|AF429429_1 polyubiquitin OUB1 [Olea eu 260 1e-69 gi|3603456|gb|AAC35858.1| polyubiquitin [Capsicum chinense] 260 1e-69 gi|902586|gb|AAC49014.1| ubiquitin 260 1e-69 gi|4809266|gb|AAD30173.1|AF148448_1 polyubiquitin [Sporobolus... 260 1e-69 gi|899608|gb|AAC49025.1| polyubiquitin 260 1e-69 gi|6934302|gb|AAF31707.1|AF221858_1 polyubiquitin [Euphorbia esu 260 1e-69 gi|1684857|gb|AAB36546.1| polyubiquitin [Phaseolus vulgaris] 260 1e-69 gi|168304|gb|AAA33401.1| ubiquitin 260 1e-69 gi|170354|gb|AAA34124.1| pentameric polyubiquitin 260 1e-69 gi|2760349|gb|AAB95252.1| ubiquitin [Arabidopsis thaliana] 260 1e-69 gi|902584|gb|AAC49013.1| polyubiquitin containing 7 ubiquitin mo 260 1e-69 gi|1684855|gb|AAB36545.1| ubiquitin-like protein [Phaseolus vulg 260 1e-69 gi|1800281|gb|AAB68045.1| polyubiquitin [Fragaria x ananassa] 260 1e-69 gi|6118549|gb|AAF04147.1| ubiquitin precursor [Hevea brasiliensi 260 1e-69 gi|2760345|gb|AAB95250.1| ubiquitin [Arabidopsis thaliana] 260 1e-69 gi|2760347|gb|AAB95251.1| ubiquitin [Arabidopsis thaliana] 260 1e-69 gi|87240493|gb|ABD32351.1| Ubiquitin [Medicago truncatula] 260 1e-69 gi|73747822|gb|AAZ82816.1| ubiquitin monomer protein [Morus mong 260 1e-69 gi|71534894|gb|AAZ32851.1| pentameric polyubiquitin [Medicago sa 260 1e-69 gi|42572839|ref|NP_974516.1| UBQ10 (POLYUBIQUITIN 10); protei... 260 1e-69 gi|33323472|gb|AAQ07453.1| ubiquitin [Musa acuminata] 260 1e-69 gi|18412930|ref|NP_567291.1| UBQ10 (POLYUBIQUITIN 10); protei... 260 1e-69 gi|170352|gb|AAA34123.1| hexameric polyubiquitin >gi|870792|g... 260 1e-69 gi|53850089|emb|CAH59739.1| polyubiquitin [Plantago major] 260 1e-69 gi|53850091|emb|CAH59740.1| polyubiquitin [Plantago major] 260 1e-69 gi|39546234|emb|CAE04243.3| OSJNBa0089N06.4 [Oryza sativa (japon 260 1e-69 gi|20589|emb|CAA34886.1| unnamed protein product [Pisum sativ... 260 1e-69 gi|82512|pir||PS0380 ubiquitin precursor - rice (fragment) >g... 260 1e-69 gi|18420267|ref|NP_568397.1| UBQ4; protein binding [Arabidops... 260 1e-69 gi|226763|prf||1604470A poly-ubiquitin 260 1e-69 gi|115444401|ref|NP_001045980.1| Os02g0161900 [Oryza sativa (... 260 1e-69 gi|248337|gb|AAB21993.1| polyubiquitin [Zea mays] >gi|248339|... 260 1e-69 gi|30679945|ref|NP_851029.1| UBQ3 (POLYUBIQUITIN 3); protein ... 260 1e-69 gi|418854|pir||S30151 polyubiquitin 6 - parsley >gi|288112|em... 260 1e-69 gi|28804499|dbj|BAC57955.1| polyubiquitin [Aster tripolium] 260 1e-69 gi|18412785|ref|NP_567286.1| UBQ11 (UBIQUITIN 11); protein bi... 260 1e-69 gi|320608|pir||S28426 polyubiquitin 4 - wild oat >gi|15989|em... 260 1e-69 gi|18412077|ref|NP_567247.1| UBQ14; protein binding [Arabidop... 260 1e-69 gi|61889379|emb|CAI51312.2| polyubiquitin [Capsicum chinense] 259 4e-69 gi|35187449|gb|AAQ84316.1| fiber polyubiquitin [Gossypium barbad 259 4e-69 gi|57282601|emb|CAD27944.1| polyubiquitin-like [Oryza sativa] 258 5e-69 gi|3789942|gb|AAC67552.1| polyubiquitin [Saccharum hybrid cultiv 258 5e-69 gi|102655942|gb|AAY33920.2| polyubiquitin [Euphorbia characias] 258 6e-69 gi|21554192|gb|AAM63271.1| unknown [Arabidopsis thaliana] 258 6e-69 gi|28436476|gb|AAO43305.1| putative polyubiquitin [Arabidopsis t 258 8e-69 gi|28436479|gb|AAO43306.1| putative polyubiquitin [Arabidopsis t 257 1e-68 gi|28436483|gb|AAO43308.1| putative polyubiquitin [Arabidopsis t 257 1e-68 gi|395295|emb|CAA52290.1| polyubiquitin [Volvox carteri f. nagar 257 1e-68 gi|37542506|gb|AAL25813.1| polyubiquitin [Prunus avium] 257 1e-68 gi|2894304|emb|CAA11267.1| polyubiquitin [Nicotiana tabacum] 257 1e-68 gi|28436485|gb|AAO43309.1| putative polyubiquitin [Arabidopsis t 256 2e-68 gi|28436472|gb|AAO43303.1| putative polyubiquitin [Arabidopsis t 256 2e-68 gi|28436474|gb|AAO43304.1| putative polyubiquitin [Arabidopsis t 256 2e-68 gi|15218646|ref|NP_176714.1| UBQ13 [Arabidopsis thaliana] 256 2e-68 gi|7439572|pir||T02358 ubiquitin homolog T8F5.13 - Arabidopsi... 256 2e-68 gi|433970|emb|CAA82268.1| polyubiquitin [Acetabularia peniculus] 254 9e-68 gi|2894308|emb|CAA11269.1| polyubiquitin [Nicotiana tabacum] 253 1e-67 gi|18405196|ref|NP_564675.1| UBQ12 (UBIQUITIN 12) [Arabidopsis t 253 1e-67 gi|115469478|ref|NP_001058338.1| Os06g0673500 [Oryza sativa (... 253 2e-67 gi|28436487|gb|AAO43310.1| putative polyubiquitin [Arabidopsis t 253 2e-67 gi|52077254|dbj|BAD46297.1| pentameric polyubiquitin-like [Or... 253 2e-67 gi|3789940|gb|AAC67551.1| tetra-ubiquitin [Saccharum hybrid cult 253 3e-67 gi|18421671|ref|NP_568552.1| UBQ9 [Arabidopsis thaliana] >gi|... 251 1e-66 gi|111140007|gb|ABH06365.1| ubiquitin [Sorbus aucuparia] 234 1e-61 gi|6650740|gb|AAF21992.1| polyubiquitin [Lilium longiflorum] 233 2e-61 gi|18398638|ref|NP_566357.1| UBQ8 [Arabidopsis thaliana] >gi|... 228 5e-60 gi|33327286|gb|AAQ08999.1| polyubiquitin 2 [Phaseolus vulgaris] 226 3e-59 gi|30983942|gb|AAP40646.1| putative polyubiquitin [Gossypium bar 221 6e-58 gi|20562909|gb|AAM22748.1| polyubiquitin 2 [Deschampsia antarcti 215 6e-56 gi|30692436|ref|NP_564379.2| RUB1 (RELATED TO UBIQUITIN 1) [A... 214 8e-56 gi|115469244|ref|NP_001058221.1| Os06g0650100 [Oryza sativa (... 214 8e-56
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 11, 2007 5:57 PM Number of letters in database: 101,016,998 Number of sequences in database: 283,237 Lambda K H 0.314 0.134 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283237 Number of Hits to DB: 668 Number of extensions: 10 Number of successful extensions: 5 Number of sequences better than 10: 1 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 4 Number of HSP's successfully gapped: 4 Length of query: 453 Length of database: 101016998 Length adjustment: 103 Effective length of query: 350 Effective length of database: 71843587 Effective search space: 3448492176 Effective search space used: 3448492176 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 62 (28.5 bits)