RID=1168858535-3886-185492707230.BLASTQ1, Contig46

Alignments
 

>gi|51490665|emb|CAG26903.1|  ALY protein [Nicotiana benthamiana]
Length=252

 Score =  132 bits (331),  Expect = 5e-31
 Identities = 69/101 (68%), Positives = 73/101 (72%), Gaps = 12/101 (11%)
 Frame = +1

Query  1    ARRFPNRSGNRPTPYSMAKAPDSAWQHDMYA--------NQTGGYSAPAARVSAIETGTK  156
            ARRFPNRS NR  PYS AKAP++AW HDM+A         Q GG  A     S+I TGTK
Sbjct  39   ARRFPNRSANRAAPYSTAKAPEAAWNHDMFAAADQAFPFGQAGGDQA----ASSISTGTK  94

Query  157  LYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            LYISNLDYGVS EDIKELFSE GDLKRYAIHYDRS   KGT
Sbjct  95   LYISNLDYGVSNEDIKELFSEAGDLKRYAIHYDRSGRSKGT  135


>gi|115452249|ref|NP_001049725.1|  Os03g0278300 [Oryza sativa (japonica cultivar-group)]
 gi|108707486|gb|ABF95281.1|  RNA and export factor-binding protein, putative, expressed [Oryza 
sativa (japonica cultivar-group)]
 gi|113548196|dbj|BAF11639.1|  Os03g0278300 [Oryza sativa (japonica cultivar-group)]
Length=273

 Score =  130 bits (327),  Expect = 1e-30
 Identities = 67/95 (70%), Positives = 73/95 (76%), Gaps = 3/95 (3%)
 Frame = +1

Query  4    RRFPNRSGNRPTPYSMAKAPDSAWQHDMYANQT---GGYSAPAARVSAIETGTKLYISNL  174
            RR   RSGNR  PY   KAP+SAWQHDMY++     GG S    RVSAIETGTKLYISNL
Sbjct  54   RRPFKRSGNRAGPYQPPKAPESAWQHDMYSDVAAGGGGGSGGGGRVSAIETGTKLYISNL  113

Query  175  DYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            D+GVSTEDIKELFSE+GDLK+Y IHYDRS   KGT
Sbjct  114  DFGVSTEDIKELFSELGDLKKYVIHYDRSGRSKGT  148


>gi|51490663|emb|CAG26902.1|  ALY protein [Nicotiana benthamiana]
Length=249

 Score =  117 bits (292),  Expect = 2e-26
 Identities = 61/98 (62%), Positives = 69/98 (70%), Gaps = 8/98 (8%)
 Frame = +1

Query  4    RRFPNRSGNRPTPYSMAK--APDSAWQHDMYANQTGGYSAPAAR----VSAIETGTKLYI  165
            RRFP+R+ NR  PYS     APDS W H+M+A     Y  PAAR    +S IETG KL I
Sbjct  43   RRFPSRAANRSAPYSSGPVHAPDSTWDHNMFAEHAPAY--PAARGAGGISGIETGIKLLI  100

Query  166  SNLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            SNLDYGVS EDIKELFSE GD+KRY+IHYD+S   KGT
Sbjct  101  SNLDYGVSNEDIKELFSEAGDIKRYSIHYDKSGRSKGT  138


>gi|94466657|emb|CAJ44457.1|  ALY protein [Nicotiana benthamiana]
Length=246

 Score =  113 bits (283),  Expect = 2e-25
 Identities = 60/98 (61%), Positives = 67/98 (68%), Gaps = 8/98 (8%)
 Frame = +1

Query  4    RRFPNRSGNRPTPYSMAK--APDSAWQHDMYANQTGGYSAPAAR----VSAIETGTKLYI  165
            RR PNR+  R  PYS     AP+S W HDM+A     Y  PAAR    +S IETG KL I
Sbjct  40   RRRPNRAAKRSAPYSSGPVHAPESTWDHDMFAEHAPAY--PAARGAGGISGIETGIKLLI  97

Query  166  SNLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            SNLDYGVS EDIKELFSE GD+KRY+IHYD+S   KGT
Sbjct  98   SNLDYGVSNEDIKELFSEAGDIKRYSIHYDKSGRSKGT  135


>gi|30697310|ref|NP_851229.1|  nucleic acid binding [Arabidopsis thaliana]
 gi|22531190|gb|AAM97099.1|  transcriptional coactivator-like protein [Arabidopsis thaliana]
 gi|23198018|gb|AAN15536.1|  transcriptional coactivator-like protein [Arabidopsis thaliana]
Length=244

 Score =  112 bits (280),  Expect = 4e-25
 Identities = 53/92 (57%), Positives = 67/92 (72%), Gaps = 1/92 (1%)
 Frame = +1

Query  4    RRFPNRSGNRPTPYSMAKAPDSAWQHDMYANQTGGYSAPAARVSAIETGTKLYISNLDYG  183
            R  PNR   R  PY  AKAP+S W HDM+++++  + +  +  + IETGTKLYISNLDYG
Sbjct  40   RNNPNRKSTRSAPYQSAKAPESTWGHDMFSDRSEDHRSGRSS-AGIETGTKLYISNLDYG  98

Query  184  VSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            V  EDIKELF+EVG+LKRY +H+DRS   KGT
Sbjct  99   VMNEDIKELFAEVGELKRYTVHFDRSGRSKGT  130


>gi|9757916|dbj|BAB08363.1|  RNA and export factor binding protein 2-I-like protein [Arabidopsis 
thaliana]
Length=239

 Score =  112 bits (280),  Expect = 4e-25
 Identities = 53/92 (57%), Positives = 67/92 (72%), Gaps = 1/92 (1%)
 Frame = +1

Query  4    RRFPNRSGNRPTPYSMAKAPDSAWQHDMYANQTGGYSAPAARVSAIETGTKLYISNLDYG  183
            R  PNR   R  PY  AKAP+S W HDM+++++  + +  +  + IETGTKLYISNLDYG
Sbjct  40   RNNPNRKSTRSAPYQSAKAPESTWGHDMFSDRSEDHRSGRSS-AGIETGTKLYISNLDYG  98

Query  184  VSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            V  EDIKELF+EVG+LKRY +H+DRS   KGT
Sbjct  99   VMNEDIKELFAEVGELKRYTVHFDRSGRSKGT  130


>gi|21555029|gb|AAM63758.1|  transcriptional coactivator-like protein [Arabidopsis thaliana]
Length=243

 Score =  109 bits (273),  Expect = 2e-24
 Identities = 52/92 (56%), Positives = 66/92 (71%), Gaps = 1/92 (1%)
 Frame = +1

Query  4    RRFPNRSGNRPTPYSMAKAPDSAWQHDMYANQTGGYSAPAARVSAIETGTKLYISNLDYG  183
            R  PNR   R  PY  AKAP+S W HDM+++++  + +  +  + IETGTKLYIS LDYG
Sbjct  40   RNNPNRKSTRSAPYQSAKAPESTWGHDMFSDRSEDHRSGRSS-AGIETGTKLYISXLDYG  98

Query  184  VSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            V  EDIKELF+EVG+LKRY +H+DRS   KGT
Sbjct  99   VMNEDIKELFAEVGELKRYTVHFDRSGRSKGT  130


>gi|30679669|ref|NP_195873.2|  nucleic acid binding [Arabidopsis thaliana]
 gi|22655123|gb|AAM98152.1|  putative protein [Arabidopsis thaliana]
 gi|30023796|gb|AAP13431.1|  At5g02530 [Arabidopsis thaliana]
Length=292

 Score =  108 bits (271),  Expect = 4e-24
 Identities = 60/104 (57%), Positives = 68/104 (65%), Gaps = 11/104 (10%)
 Frame = +1

Query  1    ARRFPNRSGNRPTPYS----MAKAPDSAWQHDMYANQTG-------GYSAPAARVSAIET  147
            +RRF NR G R  PYS      +A D+ WQ+D++A             +A     S+IET
Sbjct  47   SRRFANRVGARTAPYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIET  106

Query  148  GTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            GTKLYISNLDYGVS EDIKELFSEVGDLKRY IHYDRS   KGT
Sbjct  107  GTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGT  150


>gi|7413642|emb|CAB85990.1|  putative protein [Arabidopsis thaliana]
Length=290

 Score =  108 bits (271),  Expect = 4e-24
 Identities = 60/104 (57%), Positives = 68/104 (65%), Gaps = 11/104 (10%)
 Frame = +1

Query  1    ARRFPNRSGNRPTPYS----MAKAPDSAWQHDMYANQTG-------GYSAPAARVSAIET  147
            +RRF NR G R  PYS      +A D+ WQ+D++A             +A     S+IET
Sbjct  47   SRRFANRVGARTAPYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIET  106

Query  148  GTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            GTKLYISNLDYGVS EDIKELFSEVGDLKRY IHYDRS   KGT
Sbjct  107  GTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGT  150


>gi|42573738|ref|NP_974965.1|  nucleic acid binding [Arabidopsis thaliana]
Length=242

 Score =  104 bits (259),  Expect = 1e-22
 Identities = 51/92 (55%), Positives = 65/92 (70%), Gaps = 3/92 (3%)
 Frame = +1

Query  4    RRFPNRSGNRPTPYSMAKAPDSAWQHDMYANQTGGYSAPAARVSAIETGTKLYISNLDYG  183
            R  PNR   R  PY    AP+S W HDM+++++  + +  +  + IETGTKLYISNLDYG
Sbjct  40   RNNPNRKSTRSAPYQ--SAPESTWGHDMFSDRSEDHRSGRSS-AGIETGTKLYISNLDYG  96

Query  184  VSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            V  EDIKELF+EVG+LKRY +H+DRS   KGT
Sbjct  97   VMNEDIKELFAEVGELKRYTVHFDRSGRSKGT  128


>gi|108707487|gb|ABF95282.1|  RNA and export factor-binding protein, putative, expressed [Oryza 
sativa (japonica cultivar-group)]
 gi|108707488|gb|ABF95283.1|  RNA and export factor-binding protein, putative, expressed [Oryza 
sativa (japonica cultivar-group)]
Length=193

 Score = 95.9 bits (237),  Expect = 4e-20
 Identities = 47/59 (79%), Positives = 50/59 (84%), Gaps = 0/59 (0%)
 Frame = +1

Query  103  GGYSAPAARVSAIETGTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            GG S    RVSAIETGTKLYISNLD+GVSTEDIKELFSE+GDLK+Y IHYDRS   KGT
Sbjct  10   GGGSGGGGRVSAIETGTKLYISNLDFGVSTEDIKELFSELGDLKKYVIHYDRSGRSKGT  68


>gi|115486846|ref|NP_001065229.1|  Os12g0100100 [Oryza sativa (japonica cultivar-group)]
 gi|77553349|gb|ABA96145.1|  RNA recognition motif family protein, expressed [Oryza sativa 
(japonica cultivar-group)]
 gi|113648417|dbj|BAF28929.1|  Os12g0100100 [Oryza sativa (japonica cultivar-group)]
Length=228

 Score = 84.7 bits (208),  Expect = 9e-17
 Identities = 53/97 (54%), Positives = 61/97 (62%), Gaps = 17/97 (17%)
 Frame = +1

Query  1    ARRFPNRSGNRPT--PYSMA--KAPDSAWQHDMYANQTGGYSAPAARVSAIETGTKLYIS  168
            ARR  +R+  R    PY     +AP +A+ H            PAA V   ETGTKLYIS
Sbjct  31   ARRSHSRAATRSAAAPYHAITFQAPPTAYVHP----------TPAANV---ETGTKLYIS  77

Query  169  NLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            NLDY VS EDIKELFSEVGD+KRY+I+YDRS   KGT
Sbjct  78   NLDYAVSNEDIKELFSEVGDVKRYSINYDRSGRSKGT  114


>gi|115476498|ref|NP_001061845.1|  Os08g0427900 [Oryza sativa (japonica cultivar-group)]
 gi|38175495|dbj|BAD01191.1|  putative transcriptional coactivator(DIP2) [Oryza sativa (japonica 
cultivar-group)]
 gi|38175772|dbj|BAD01466.1|  putative transcriptional coactivator(DIP2) [Oryza sativa (japonica 
cultivar-group)]
 gi|113623814|dbj|BAF23759.1|  Os08g0427900 [Oryza sativa (japonica cultivar-group)]
Length=286

 Score = 83.6 bits (205),  Expect = 2e-16
 Identities = 43/88 (48%), Positives = 54/88 (61%), Gaps = 8/88 (9%)
 Frame = +1

Query  16   NRSGNRPTPYSMAKAPDSAWQHDMYANQTGGYSAPAARVSAIETGTKLYISNLDYGVSTE  195
            +R   R    S ++  D  W+ D++++            S IETGTKLYISNLDYGVS E
Sbjct  53   SRPSARTIAKSFSRTKDMTWRPDLFSDSMAA--------SGIETGTKLYISNLDYGVSNE  104

Query  196  DIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            DIKELFSEVG LKR+A+H+D      GT
Sbjct  105  DIKELFSEVGHLKRFAVHFDGYGRPNGT  132


>gi|115483699|ref|NP_001065221.1|  Os11g0100200 [Oryza sativa (japonica cultivar-group)]
 gi|113644215|dbj|BAF27356.1|  Os11g0100200 [Oryza sativa (japonica cultivar-group)]
Length=174

 Score = 82.0 bits (201),  Expect = 6e-16
 Identities = 48/97 (49%), Positives = 60/97 (61%), Gaps = 20/97 (20%)
 Frame = +1

Query  1    ARRFPNRSGNRPT--PYSMA--KAPDSAWQHDMYANQTGGYSAPAARVSAIETGTKLYIS  168
            ARRF +R+  R    PY     +AP +A+ H                 + +ETGTKL+IS
Sbjct  30   ARRFHSRAATRAAAAPYHAITFQAPPTAYTHP----------------TPVETGTKLHIS  73

Query  169  NLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            NLDY VS EDIKELFSEVGD+KRY+I+YD+S   KGT
Sbjct  74   NLDYAVSNEDIKELFSEVGDVKRYSINYDKSGRSKGT  110


>gi|77548276|gb|ABA91073.1|  RNA recognition motif family protein, expressed [Oryza sativa 
(japonica cultivar-group)]
Length=224

 Score = 82.0 bits (201),  Expect = 6e-16
 Identities = 48/97 (49%), Positives = 60/97 (61%), Gaps = 20/97 (20%)
 Frame = +1

Query  1    ARRFPNRSGNRPT--PYSMA--KAPDSAWQHDMYANQTGGYSAPAARVSAIETGTKLYIS  168
            ARRF +R+  R    PY     +AP +A+ H                 + +ETGTKL+IS
Sbjct  30   ARRFHSRAATRAAAAPYHAITFQAPPTAYTHP----------------TPVETGTKLHIS  73

Query  169  NLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            NLDY VS EDIKELFSEVGD+KRY+I+YD+S   KGT
Sbjct  74   NLDYAVSNEDIKELFSEVGDVKRYSINYDKSGRSKGT  110


>gi|42568662|ref|NP_200803.3|  nucleic acid binding [Arabidopsis thaliana]
Length=178

 Score = 80.9 bits (198),  Expect = 1e-15
 Identities = 37/49 (75%), Positives = 42/49 (85%), Gaps = 0/49 (0%)
 Frame = +1

Query  133  SAIETGTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            + IETGTKLYISNLDYGV  EDIKELF+EVG+LKRY +H+DRS   KGT
Sbjct  16   AGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGT  64


>gi|40644804|emb|CAE53910.1|  putative DIP2 protein [Triticum aestivum]
Length=259

 Score = 77.4 bits (189),  Expect = 1e-14
 Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
 Frame = +1

Query  19   RSGNRPTPYSMAKAPDSAWQHDMYANQTGGYSAPAARVSAIETGTKLYISNLDYGVSTED  198
            RS +     S  K  D AW HD +     G S  AA +  IETGTKLY+SNL YGV+ ED
Sbjct  76   RSSSYAIAKSFNKTKDFAWTHDRF-----GDSMVAAGLPGIETGTKLYVSNLHYGVTKED  130

Query  199  IKELFSEVGDLKRYAIHYDRSXXXKGT  279
            ++ELFSE+G LK   +HYD +    G+
Sbjct  131  LQELFSEMGHLKNCIVHYDNNRHPTGS  157


>gi|30693141|ref|NP_198588.2|  nucleic acid binding [Arabidopsis thaliana]
 gi|37201990|gb|AAQ89610.1|  At5g37720 [Arabidopsis thaliana]
 gi|110735849|dbj|BAE99901.1|  hypothetical protein [Arabidopsis thaliana]
Length=288

 Score = 75.1 bits (183),  Expect = 7e-14
 Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 9/97 (9%)
 Frame = +1

Query  1    ARRFPNRSGNRPTPYSMAK----APDSAWQHDMYANQTGGYSAPAARVSAIETGTKLYIS  168
            ARR P     RP+ +++ K         WQ  ++ +        AA  S +E GT+L+++
Sbjct  44   ARRGPLAVNARPSSFTINKPVRRVRSLPWQSGLFED-----GLRAAGASGVEVGTRLHVT  98

Query  169  NLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            NLD GV+ EDI+ELFSE+G+++RYAIHYD++    GT
Sbjct  99   NLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGT  135


>gi|9663025|emb|CAC01084.1|  DIP2 protein [Arabidopsis thaliana]
Length=288

 Score = 75.1 bits (183),  Expect = 7e-14
 Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 9/97 (9%)
 Frame = +1

Query  1    ARRFPNRSGNRPTPYSMAK----APDSAWQHDMYANQTGGYSAPAARVSAIETGTKLYIS  168
            ARR P     RP+ +++ K         WQ  ++ +        AA  S +E GT+L+++
Sbjct  44   ARRGPLAVNARPSSFTINKPVRRVRSLPWQSGLFED-----GLRAAGASGVEVGTRLHVT  98

Query  169  NLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            NLD GV+ EDI+ELFSE+G+++RYAIHYD++    GT
Sbjct  99   NLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGT  135


>gi|115467430|ref|NP_001057314.1|  Os06g0256200 [Oryza sativa (japonica cultivar-group)]
 gi|52077258|dbj|BAD46300.1|  putative DIP2 protein [Oryza sativa (japonica cultivar-group)]
 gi|113595354|dbj|BAF19228.1|  Os06g0256200 [Oryza sativa (japonica cultivar-group)]
Length=294

 Score = 72.8 bits (177),  Expect = 3e-13
 Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
 Frame = +1

Query  19   RSGNRPTPYSMAKAPDSAWQHDMYANQTGGYSAPAARVSAIETGTKLYISNLDYGVSTED  198
            RS +     S  K  D  W+ D++ +     S  AA +S  E+ TKLYISNL YGV+ ED
Sbjct  71   RSSSYAIAKSFNKTKDIVWRQDLFED-----SMVAAGLSVTESSTKLYISNLHYGVTKED  125

Query  199  IKELFSEVGDLKRYAIHYDRSXXXKGT  279
            I+ELFSE+G LK  A+HYD +    G+
Sbjct  126  IQELFSEMGHLKHCAVHYDNNRRPTGS  152


>gi|33146678|dbj|BAC80073.1|  putative RNA and export factor binding protein [Oryza sativa 
(japonica cultivar-group)]
Length=323

 Score = 72.4 bits (176),  Expect = 4e-13
 Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 11/103 (10%)
 Frame = +1

Query  4    RRFPNRSGNRPTPYSMAKAPDSAWQHDMYANQTGGYS-----------APAARVSAIETG  150
            R  P  +   P P +  KA   A  + +Y+      +           A AA   ++ETG
Sbjct  79   RAAPPAARAAPYPPAGPKAAGGASPYGVYSEHVAAMAGVVPRPRPPPAAAAAAARSLETG  138

Query  151  TKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            TKL+ISNLD GV+ +D++ELFSE+G+LKRY+++YD+    +GT
Sbjct  139  TKLHISNLDPGVTVDDVQELFSEIGELKRYSVNYDKDGKSQGT  181


>gi|115471303|ref|NP_001059250.1|  Os07g0237100 [Oryza sativa (japonica cultivar-group)]
 gi|113610786|dbj|BAF21164.1|  Os07g0237100 [Oryza sativa (japonica cultivar-group)]
Length=134

 Score = 71.6 bits (174),  Expect = 8e-13
 Identities = 31/56 (55%), Positives = 46/56 (82%), Gaps = 0/56 (0%)
 Frame = +1

Query  112  SAPAARVSAIETGTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            +A AA   ++ETGTKL+ISNLD GV+ +D++ELFSE+G+LKRY+++YD+    +GT
Sbjct  13   AAAAAAARSLETGTKLHISNLDPGVTVDDVQELFSEIGELKRYSVNYDKDGKSQGT  68


>gi|12323574|gb|AAG51767.1|AC066691_7  RNA and export factor binding protein, putative; 38196-36208 
[Arabidopsis thaliana]
Length=282

 Score = 71.2 bits (173),  Expect = 1e-12
 Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 8/86 (9%)
 Frame = +1

Query  31   RPTPYSMAKAPDSA-WQH--DMYANQTGGYSAPAARVSAIETGTKLYISNLDYGVSTEDI  201
            R  P ++A+   S  WQ+  D+Y       +  A  VS +E GT +YI+NLD GV+ EDI
Sbjct  56   RRGPLALARRKRSLPWQNQNDLYEE-----TLRAVGVSGVEVGTTVYITNLDQGVTNEDI  110

Query  202  KELFSEVGDLKRYAIHYDRSXXXKGT  279
            +EL++E+G+LKRYAIHYD++    G+
Sbjct  111  RELYAEIGELKRYAIHYDKNGRPSGS  136


>gi|9757981|dbj|BAB08317.1|  unnamed protein product [Arabidopsis thaliana]
Length=330

 Score = 71.2 bits (173),  Expect = 1e-12
 Identities = 30/53 (56%), Positives = 43/53 (81%), Gaps = 0/53 (0%)
 Frame = +1

Query  121  AARVSAIETGTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            AA  S +E GT+L+++NLD GV+ EDI+ELFSE+G+++RYAIHYD++    GT
Sbjct  125  AAGASGVEVGTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGT  177


>gi|9663023|emb|CAC01083.1|  DIP1 protein [Arabidopsis thaliana]
Length=295

 Score = 70.9 bits (172),  Expect = 1e-12
 Identities = 33/68 (48%), Positives = 48/68 (70%), Gaps = 5/68 (7%)
 Frame = +1

Query  76   QHDMYANQTGGYSAPAARVSAIETGTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYD  255
            Q+D+Y       +  A  VS +E GT +YI+NLD GV+ EDI+EL++E+G+LKRYAIHYD
Sbjct  87   QNDLYEE-----TLRAVGVSGVEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYD  141

Query  256  RSXXXKGT  279
            ++    G+
Sbjct  142  KNGRPSGS  149


>gi|18408471|ref|NP_564871.1|  nucleic acid binding [Arabidopsis thaliana]
 gi|15294238|gb|AAK95296.1|AF410310_1  At1g66260/T6J19_1 [Arabidopsis thaliana]
 gi|23506135|gb|AAN31079.1|  At1g66260/T6J19_1 [Arabidopsis thaliana]
Length=295

 Score = 70.9 bits (172),  Expect = 1e-12
 Identities = 33/68 (48%), Positives = 48/68 (70%), Gaps = 5/68 (7%)
 Frame = +1

Query  76   QHDMYANQTGGYSAPAARVSAIETGTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYD  255
            Q+D+Y       +  A  VS +E GT +YI+NLD GV+ EDI+EL++E+G+LKRYAIHYD
Sbjct  87   QNDLYEE-----TLRAVGVSGVEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYD  141

Query  256  RSXXXKGT  279
            ++    G+
Sbjct  142  KNGRPSGS  149


>gi|94466659|emb|CAJ44458.1|  ALY protein [Nicotiana benthamiana]
Length=275

 Score = 68.6 bits (166),  Expect = 6e-12
 Identities = 41/96 (42%), Positives = 58/96 (60%), Gaps = 8/96 (8%)
 Frame = +1

Query  4    RRFPNRSGNRPTPYSMAKA----PDSAWQHDMYANQTGGYSAPAARV-SAIETGTKLYIS  168
            R+ P     RP+   +AK+     +  WQ+    N     S  AA + S +E+GTK+Y+S
Sbjct  46   RKVPLGVNARPSATRIAKSFRRTKNLPWQN---GNGLFEDSLRAAGIPSGLESGTKVYVS  102

Query  169  NLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKG  276
            NLD GV+  DI+ELFSE+G+L RYAIHYD++    G
Sbjct  103  NLDVGVTNSDIRELFSEIGELIRYAIHYDKNGRPSG  138


>gi|46982390|gb|AAT08172.1|  Hin19 [Nicotiana tabacum]
Length=219

 Score = 67.8 bits (164),  Expect = 1e-11
 Identities = 29/48 (60%), Positives = 39/48 (81%), Gaps = 0/48 (0%)
 Frame = +1

Query  133  SAIETGTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKG  276
            S +E+GTK+Y+SNLD GV+  DI+ELFSE+G+L RYAIHYD++    G
Sbjct  34   SGLESGTKVYVSNLDVGVTNSDIRELFSEIGELIRYAIHYDKNGRPSG  81


>gi|92888900|gb|ABE89613.1|  polyadenylate binding protein, human types 1, 2, 3, 4 family 
[Medicago truncatula]
Length=647

 Score = 38.5 bits (88),  Expect = 0.007
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 0/44 (0%)
 Frame = +1

Query  148  GTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            G  LY+ NLD  ++ E +KE+FSE G +  Y I  D +   +G+
Sbjct  314  GLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVSRGS  357


>gi|83853808|gb|ABC47841.1|  poly(A)-binding protein [Glycine max]
Length=630

 Score = 37.4 bits (85),  Expect = 0.016
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 0/44 (0%)
 Frame = +1

Query  148  GTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            GT LYI NLD  V  E++ ELFSE G +    +  D +   +G+
Sbjct  305  GTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPNGISRGS  348


>gi|46949206|gb|AAT07459.1|  cap-binding protein [Mirabilis jalapa]
Length=147

 Score = 37.4 bits (85),  Expect = 0.016
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 0/42 (0%)
 Frame = +1

Query  136  AIETGTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDRS  261
            A++  T LYI N+ +  + E + ELFS VG++K+  +  D++
Sbjct  29   ALKKSTTLYIGNMSFYTTEEQVYELFSRVGEIKKITMGLDKN  70


>gi|7673355|gb|AAF66823.1|AF190655_1  poly(A)-binding protein [Nicotiana tabacum]
Length=649

 Score = 37.4 bits (85),  Expect = 0.016
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 0/44 (0%)
 Frame = +1

Query  148  GTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            G  LYI NLD  +S E +KELFS  G +    +  D S   KG+
Sbjct  308  GLNLYIKNLDDSISDEKLKELFSPYGTITSCKVMRDPSGVSKGS  351


>gi|1350821|sp|P49314|ROC2_NICPL  31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)
 gi|19710|emb|CAA46233.1|  RNA binding protein 31 [Nicotiana plumbaginifolia]
Length=292

 Score = 37.0 bits (84),  Expect = 0.021
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 0/41 (0%)
 Frame = +1

Query  136  AIETGTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDR  258
            ++++  ++Y+ NL +GV    +KELFSE G++    + YDR
Sbjct  203  SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDR  243


>gi|12230585|sp|Q08937|ROC2_NICSY  29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)
 gi|14135|emb|CAA43428.1|  29kD B ribonucleoprotein [Nicotiana sylvestris]
Length=291

 Score = 37.0 bits (84),  Expect = 0.021
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 0/41 (0%)
 Frame = +1

Query  136  AIETGTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDR  258
            ++++  ++Y+ NL +GV    +KELFSE G++    + YDR
Sbjct  202  SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDR  242


>gi|15231817|ref|NP_190914.1|  CP29; RNA binding [Arabidopsis thaliana]
 gi|30316379|sp|Q43349|ROC2_ARATH  29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding 
protein cp29)
 gi|11346380|pir||T45886  RNA-binding protein cp29 protein - Arabidopsis thaliana
 gi|6729497|emb|CAB67653.1|  RNA-binding protein cp29 protein [Arabidopsis thaliana]
 gi|14532570|gb|AAK64013.1|  AT3g53460/F4P12_160 [Arabidopsis thaliana]
 gi|18655393|gb|AAL76152.1|  AT3g53460/F4P12_160 [Arabidopsis thaliana]
 gi|21593426|gb|AAM65393.1|  RNA-binding protein cp29 protein [Arabidopsis thaliana]
Length=342

 Score = 37.0 bits (84),  Expect = 0.021
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 0/55 (0%)
 Frame = +1

Query  94   NQTGGYSAPAARVSAIETGTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDR  258
            +Q   Y + +   S   +G +LY+ NL +GV    ++ LF+E G +    + YDR
Sbjct  238  SQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDR  292


 Score = 35.8 bits (81),  Expect = 0.046
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = +1

Query  76   QHDMYANQTGGYSAPAARVSAIETGTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYD  255
            + DM+A+  G  SAP  R ++     KL++ NL + V +  + +LF   G+++   + YD
Sbjct  77   EDDMFAD--GDDSAPVER-NSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYD  133

Query  256  R  258
            +
Sbjct  134  K  134


>gi|681904|dbj|BAA06519.1|  cp29 [Arabidopsis thaliana]
Length=326

 Score = 37.0 bits (84),  Expect = 0.021
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 0/55 (0%)
 Frame = +1

Query  94   NQTGGYSAPAARVSAIETGTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDR  258
            +Q   Y + +   S   +G +LY+ NL +GV    ++ LF+E G +    + YDR
Sbjct  222  SQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDR  276


 Score = 35.8 bits (81),  Expect = 0.046
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = +1

Query  76   QHDMYANQTGGYSAPAARVSAIETGTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYD  255
            + DM+A+  G  SAP  R ++     KL++ NL + V +  + +LF   G+++   + YD
Sbjct  69   EDDMFAD--GDDSAPVER-NSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYD  125

Query  256  R  258
            +
Sbjct  126  K  126


>gi|30693824|ref|NP_850692.1|  CP29; RNA binding [Arabidopsis thaliana]
 gi|681902|dbj|BAA06518.1|  cp29 [Arabidopsis thaliana]
Length=334

 Score = 37.0 bits (84),  Expect = 0.021
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 0/55 (0%)
 Frame = +1

Query  94   NQTGGYSAPAARVSAIETGTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDR  258
            +Q   Y + +   S   +G +LY+ NL +GV    ++ LF+E G +    + YDR
Sbjct  230  SQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDR  284


 Score = 35.8 bits (81),  Expect = 0.046
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = +1

Query  76   QHDMYANQTGGYSAPAARVSAIETGTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYD  255
            + DM+A+  G  SAP  R ++     KL++ NL + V +  + +LF   G+++   + YD
Sbjct  77   EDDMFAD--GDDSAPVER-NSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYD  133

Query  256  R  258
            +
Sbjct  134  K  134


>gi|116054751|emb|CAL56828.1|  FOG: RRM domain (ISS) [Ostreococcus tauri]
Length=276

 Score = 36.6 bits (83),  Expect = 0.027
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
 Frame = +1

Query  136  AIETGTKLYISNLDYGVSTEDIK------ELFSEVGDLKRYAIHYDRSXXXKGT  279
            A+   TKL + NLD+ V+  DIK      ELFS+VG +    ++Y  +   KGT
Sbjct  98   AVGGKTKLMVGNLDFKVNDRDIKVSLGIAELFSQVGRVLSAGVNYGPNGKSKGT  151


>gi|13560783|gb|AAK30205.1|AF349964_1  poly(A)-binding protein [Daucus carota]
Length=658

 Score = 36.2 bits (82),  Expect = 0.035
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 0/44 (0%)
 Frame = +1

Query  148  GTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            G  LY+ NLD  +  E +KELFSE G +    +  D S   +G+
Sbjct  321  GVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGS  364


 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +1

Query  76   QHDMYANQTGGYSAPAARVSAIE---TGTKLYISNLDYGVSTEDIKELFSEVGDLKRYAI  246
            Q  +  + + G SA AA  +      T T LY+ +LD  V+   + +LF++VG +    +
Sbjct  12   QQQIPVSGSNGVSAGAAANAGGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRV  71

Query  247  HYDRS  261
              D S
Sbjct  72   CRDLS  76


>gi|2330647|emb|CAA74889.1|  ribonucleoprotein [Pisum sativum]
 gi|10179830|gb|AAG13900.1|  33 kDa ribonucleoprotein [Pisum sativum]
Length=291

 Score = 36.2 bits (82),  Expect = 0.035
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 0/62 (0%)
 Frame = +1

Query  73   WQHDMYANQTGGYSAPAARVSAIETGTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHY  252
            W+ +   N+TGG        +      KL++ NL Y V +E +  LF   G ++   + Y
Sbjct  83   WEPEAAENETGGEDYAGGDFAEPSEDAKLFVGNLPYDVDSEKLAMLFEPAGTVEIAEVIY  142

Query  253  DR  258
            +R
Sbjct  143  NR  144


>gi|115473531|ref|NP_001060364.1|  Os07g0631900 [Oryza sativa (japonica cultivar-group)]
 gi|22296371|dbj|BAC10140.1|  putative 29 kDa ribonucleoprotein A, chloroplast precursor [Oryza 
sativa (japonica cultivar-group)]
 gi|113611900|dbj|BAF22278.1|  Os07g0631900 [Oryza sativa (japonica cultivar-group)]
Length=264

 Score = 36.2 bits (82),  Expect = 0.035
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 0/48 (0%)
 Frame = +1

Query  115  APAARVSAIETGTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDR  258
            +P    S  ++  KLY+ NL +GV    ++ LFSE G +    + YDR
Sbjct  168  SPRGGGSNFDSSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDR  215


>gi|33504434|emb|CAD44189.1|  putative poly(A) binding protein [Mangifera indica]
Length=130

 Score = 35.8 bits (81),  Expect = 0.046
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 0/44 (0%)
 Frame = +1

Query  148  GTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            G  LY+ NLDY +  + +K+LFS+ G +    +  D +   +G+
Sbjct  13   GANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGS  56


>gi|7673359|gb|AAF66825.1|  poly(A)-binding protein [Nicotiana tabacum]
Length=479

 Score = 35.8 bits (81),  Expect = 0.046
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 0/44 (0%)
 Frame = +1

Query  148  GTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            G  LY+ NLD  +  E +KELFSE G +    +  D S   +G+
Sbjct  141  GLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGISRGS  184


>gi|116058934|emb|CAL54641.1|  RNA-binding protein ELAV/HU (RRM superfamily) (ISS) [Ostreococcus 
tauri]
Length=504

 Score = 35.4 bits (80),  Expect = 0.060
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 0/44 (0%)
 Frame = +1

Query  148  GTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            G  LYI NL+ G   E ++ELF+E G +    +  D S   +G+
Sbjct  312  GANLYIKNLEEGTDDEKLRELFNEFGTITSCRVMRDASGASRGS  355


>gi|110737295|dbj|BAF00594.1|  hypothetical protein [Arabidopsis thaliana]
Length=261

 Score = 35.4 bits (80),  Expect = 0.060
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query  46   SMAKAPDSAWQHDMYANQTGGYSAPAARVSAIETG-TKLYISNLDYGVSTEDIKELFSEV  222
            S+A  P S  +H    + +   SAP      +    + LY+SNLD+ ++  DI  LFS  
Sbjct  23   SVAAPPPSNPKHQ--PSSSAKSSAPGGGSGGLAPSKSTLYVSNLDFSLTNSDIHTLFSTF  80

Query  223  GDLKRYAIHYDR  258
            G + R  +  DR
Sbjct  81   GKVARVTVLKDR  92


>gi|15227815|ref|NP_179916.1|  PAB4; RNA binding / translation initiation factor [Arabidopsis 
thaliana]
 gi|2642429|gb|AAB87097.1|  putative poly(A) binding protein [Arabidopsis thaliana]
 gi|15292851|gb|AAK92796.1|  putative poly(A) binding protein [Arabidopsis thaliana]
 gi|19310779|gb|AAL85120.1|  putative poly(A) binding protein [Arabidopsis thaliana]
Length=662

 Score = 35.4 bits (80),  Expect = 0.060
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 0/44 (0%)
 Frame = +1

Query  148  GTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            G  LY+ NLD  V+ E ++ELF+E G +    +  D S   KG+
Sbjct  327  GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGS  370


>gi|13430610|gb|AAK25927.1|AF360217_1  putative poly(A) binding protein [Arabidopsis thaliana]
Length=662

 Score = 35.4 bits (80),  Expect = 0.060
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 0/44 (0%)
 Frame = +1

Query  148  GTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKGT  279
            G  LY+ NLD  V+ E ++ELF+E G +    +  D S   KG+
Sbjct  327  GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGS  370


>gi|15228279|ref|NP_187651.1|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|12322795|gb|AAG51392.1|AC011560_24  hypothetical protein; 114721-113936 [Arabidopsis thaliana]
 gi|54261729|gb|AAV31168.1|  At3g10400 [Arabidopsis thaliana]
 gi|61656137|gb|AAX49371.1|  At3g10400 [Arabidopsis thaliana]
Length=261

 Score = 35.4 bits (80),  Expect = 0.060
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query  46   SMAKAPDSAWQHDMYANQTGGYSAPAARVSAIETG-TKLYISNLDYGVSTEDIKELFSEV  222
            S+A  P S  +H    + +   SAP      +    + LY+SNLD+ ++  DI  LFS  
Sbjct  23   SVAAPPPSNPKHQ--PSSSAKSSAPGGGSGGLAPSKSTLYVSNLDFSLTNSDIHTLFSTF  80

Query  223  GDLKRYAIHYDR  258
            G + R  +  DR
Sbjct  81   GKVARVTVLKDR  92


>gi|115470657|ref|NP_001058927.1|  Os07g0158300 [Oryza sativa (japonica cultivar-group)]
 gi|34394882|dbj|BAC84331.1|  putative RNA-binding protein [Oryza sativa (japonica cultivar-group)]
 gi|113610463|dbj|BAF20841.1|  Os07g0158300 [Oryza sativa (japonica cultivar-group)]
Length=348

 Score = 35.4 bits (80),  Expect = 0.060
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 0/51 (0%)
 Frame = +1

Query  106  GYSAPAARVSAIETGTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDR  258
            GY  P +R +  +   +L++ NL Y +++ +I + FSE G +    I YD+
Sbjct  103  GYYPPRSRPALGQEPGRLFVGNLPYTMTSGEISQTFSEAGRVDNVQIIYDK  153


>gi|15228016|ref|NP_181204.1|  PAB7; RNA binding / translation initiation factor [Arabidopsis 
thaliana]
 gi|12229883|sp|Q9ZQA8|PABPX_ARATH  Probable polyadenylate-binding protein At2g36660 (Poly(A)-binding 
protein At2g36660) (PABP)
 gi|4415911|gb|AAD20142.1|  putative poly(A) binding protein [Arabidopsis thaliana]
Length=609

 Score = 35.4 bits (80),  Expect = 0.060
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 0/58 (0%)
 Frame = +1

Query  103  GGYSAPAARVSAIETGTKLYISNLDYGVSTEDIKELFSEVGDLKRYAIHYDRSXXXKG  276
            G +     RV   E  T LY+ NLD  VS + ++E F+E G +   AI  D +   +G
Sbjct  185  GKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRG  242
Distribution of 115 Blast Hits on the Query Sequence
