Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168858611-9464-183238994788.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,457,254 sequences; 1,532,736,548 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig49 Length=464
Related Structures Score E Sequences producing significant alignments: (Bits) Value gi|42407684|dbj|BAD08833.1| putative 60S ribosomal protein L3... 172 5e-43 gi|37932221|gb|AAP72960.1| putative ribosomal protein L31 [Lactu 171 1e-42 gi|14423898|sp|Q9M573|RL31_PERFR 60S ribosomal protein L31 >g... 170 2e-42 gi|54111529|gb|AAV28627.1| putative 60S ribosomal protein L31 [Z 168 7e-42 gi|89475536|gb|ABD73300.1| ribosomal protein L31 [Panax ginseng] 167 2e-41 gi|6094052|sp|O65071|RL31_PICMA 60S ribosomal protein L31 >gi... 167 2e-41 gi|110590380|pdb|2GO5|6 Chain 6, Structure Of Signal Recognit... 166 3e-41 gi|56481111|gb|AAV92186.1| 60S ribosomal protein L31a [Pseudo... 166 3e-41 gi|115467818|ref|NP_001057508.1| Os06g0319700 [Oryza sativa (... 164 2e-40 gi|1173027|sp|P46290|RL31_NICGU 60S ribosomal protein L31 >gi... 162 5e-40 gi|115448311|ref|NP_001047935.1| Os02g0717800 [Oryza sativa (... 160 1e-39 gi|14423899|sp|Q9MAV7|RL31_PANGI 60S ribosomal protein L31 >g... 160 2e-39 gi|15236157|ref|NP_194353.1| structural constituent of riboso... 159 4e-39 gi|21553532|gb|AAM62625.1| 60S ribosomal protein L31 [Arabidopsi 158 7e-39 gi|15241902|ref|NP_200482.1| structural constituent of riboso... 158 9e-39 gi|15224836|ref|NP_179564.1| structural constituent of riboso... 154 1e-37 gi|1173024|sp|P45841|RL31_CHLRE 60S ribosomal protein L31 >gi... 121 9e-28 gi|74272613|gb|ABA01102.1| 60S ribosomal protein L31 [Chlamydomo 120 3e-27 gi|6440794|dbj|BAA78583.1| 60S ribosomal protein L31 [Chlamydomo 119 6e-27 gi|115477176|ref|NP_001062184.1| Os08g0505300 [Oryza sativa (... 84.3 2e-16 gi|2996164|gb|AAC32173.1| putative 60S ribosomal protein L31 [Pi 63.5 3e-10 gi|2996162|gb|AAC32172.1| putative 60S ribosomal protein L31 [Pi 63.5 3e-10 gi|6049118|gb|AAF02462.1|AF127445_1 putative 60S ribosomal prote 63.5 3e-10 gi|6049120|gb|AAF02463.1|AF127446_1 putative 60S ribosomal prote 63.5 3e-10 gi|37776907|emb|CAD23146.1| ribosomal protein L31 [Oryza sativa] 49.3 6e-06 gi|116060100|emb|CAL56159.1| 60S ribosomal protein L31 (ISS) [Os 43.5 3e-04 gi|115437564|ref|NP_001043325.1| Os01g0556600 [Oryza sativa (... 30.0 3.7 gi|15237677|ref|NP_201239.1| transcription factor/ transcript... 29.6 4.8 gi|116056664|emb|CAL52953.1| Predicted esterase of the alpha-... 29.3 6.3 gi|115478955|ref|NP_001063071.1| Os09g0385800 [Oryza sativa (... 29.3 6.3
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 11, 2007 5:57 PM Number of letters in database: 101,016,998 Number of sequences in database: 283,237 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283237 Number of Hits to DB: 254 Number of extensions: 3 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 464 Length of database: 101016998 Length adjustment: 103 Effective length of query: 361 Effective length of database: 71843587 Effective search space: 3664022937 Effective search space used: 3664022937 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 62 (28.5 bits)