Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168859340-22003-154595022602.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,457,254 sequences; 1,532,736,548 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig62 Length=565
Score E Sequences producing significant alignments: (Bits) Value gi|115452611|ref|NP_001049906.1| Os03g0308700 [Oryza sativa (... 25.8 1.7 gi|27817931|dbj|BAC55695.1| putative diaphanous homologue [Or... 25.8 2.1 gi|15242969|ref|NP_200624.1| actin binding [Arabidopsis thali... 25.8 2.1 gi|79356325|ref|NP_174461.2| DNA binding / DNA-directed RNA p... 25.8 2.1 gi|12321294|gb|AAG50715.1|AC079041_8 unknown protein [Arabidopsi 25.8 2.1 gi|46850179|gb|AAT02521.1| cell wall protein GP2 [Chlamydomonas 25.8 2.1 gi|115473145|ref|NP_001060171.1| Os07g0596300 [Oryza sativa (... 25.8 2.2 gi|9759597|dbj|BAB11454.1| unnamed protein product [Arabidopsis 26.6 2.7 gi|108709301|gb|ABF97096.1| hypothetical protein LOC_Os03g361... 30.8 3.4 gi|21693906|gb|AAK92674.2|AC090714_7 hypothetical protein [Oryza 30.8 3.4 gi|115474313|ref|NP_001060753.1| Os08g0100500 [Oryza sativa (... 26.6 3.4 gi|116057450|emb|CAL51877.1| Meltrins, fertilins and related ... 25.8 3.5 gi|8843809|dbj|BAA97357.1| unnamed protein product [Arabidopsis 25.8 3.6 gi|1655699|emb|CAA69032.1| pherophorin-S [Volvox carteri f. naga 25.8 3.6 gi|30696817|ref|NP_200517.2| unknown protein [Arabidopsis thalia 25.8 3.6 gi|14253151|emb|CAC39316.1| VMP1 protein [Volvox carteri f. naga 25.8 3.6 gi|18765766|dbj|BAB85219.1| matrix metalloproteinase [Volvox car 25.8 3.6 gi|115434892|ref|NP_001042204.1| Os01g0180000 [Oryza sativa (... 25.8 3.7 gi|38637284|dbj|BAD03547.1| PWWP domain protein-like [Oryza s... 26.6 3.8 gi|115465803|ref|NP_001056501.1| Os05g0593200 [Oryza sativa (... 26.6 5.1 gi|55773726|dbj|BAD72409.1| HGWP repeat containing protein-li... 30.0 5.8 gi|113367198|gb|ABI34656.1| bZIP transcription factor bZIP94 [Gl 29.6 7.6 gi|34394670|dbj|BAC83976.1| HGWP repeat containing protein-li... 29.6 7.6 gi|110289394|gb|AAP54582.2| Plus-3 domain containing protein,... 25.8 9.1 gi|115472205|ref|NP_001059701.1| Os07g0496300 [Oryza sativa (... 29.3 9.9 gi|115451577|ref|NP_001049389.1| Os03g0217000 [Oryza sativa (... 29.3 9.9 gi|19881573|gb|AAM00974.1|AC090482_3 Hypothetical protein [Oryza 29.3 9.9 gi|115468962|ref|NP_001058080.1| Os06g0616900 [Oryza sativa (... 29.3 9.9 gi|50726451|dbj|BAD34059.1| serine/threonine protein kinase-l... 29.3 9.9 gi|46389926|dbj|BAD15710.1| HGWP repeat containing protein-li... 29.3 9.9 gi|30682386|ref|NP_196460.2| unknown protein [Arabidopsis tha... 29.3 9.9
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 11, 2007 5:57 PM Number of letters in database: 101,016,998 Number of sequences in database: 283,237 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283237 Number of Hits to DB: 319 Number of extensions: 6 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 565 Length of database: 101016998 Length adjustment: 107 Effective length of query: 458 Effective length of database: 70710639 Effective search space: 5727561759 Effective search space used: 5727561759 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)