RID=1168859547-23363-194628397173.BLASTQ4, Contig67

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168859547-23363-194628397173.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,457,254 sequences; 1,532,736,548 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig67
Length=445

Distribution of 16 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|116061921|emb|CAL52639.1|  5'-nucleotidase (ISS) [Ostreococcus  31.6    1.1  
gi|62732810|gb|AAX94929.1|  retrotransposon protein, putative,...  30.8    1.9  
gi|18266643|gb|AAL67589.1|AC018929_11  putative gypsy-type ret...  30.8    1.9   
gi|116317880|emb|CAH65909.1|  H0207B04.10 [Oryza sativa (indica c  30.0    3.3  
gi|38344114|emb|CAE01721.2|  OSJNBb0050O03.11 [Oryza sativa (japo  30.0    3.3   
gi|6056391|gb|AAF02855.1|AC009324_4  Similar to retrotransposon p  29.6    4.3  
gi|77554809|gb|ABA97605.1|  retrotransposon protein, putative,...  29.6    4.3  
gi|92867283|gb|ABE77617.1|  conserved hypothetical protein [Medic  28.9    7.3  
gi|19697423|gb|AAL93058.1|AC093180_5  putative gypsy-type poly...  28.9    7.3   
gi|21553710|gb|AAM62803.1|  amino acid carrier, putative [Arabido  28.9    7.3   
gi|15223930|ref|NP_177862.1|  AAP3; amino acid permease [Arabi...  28.9    7.3   
gi|92896872|gb|ABE93384.1|  Retrotransposon gag protein; Retro...  28.5    9.5  
gi|92895551|gb|ABE92744.1|  RNA-directed DNA polymerase (Rever...  28.5    9.5  
gi|92879347|gb|ABE85484.1|  Retrotransposon gag protein; Retro...  28.5    9.5  
gi|92875550|gb|ABE83492.1|  RNA-directed DNA polymerase (Rever...  28.5    9.5  
gi|92867300|gb|ABE77634.1|  Retrotransposon gag protein; Retro...  28.5    9.5

Alignments

 

>gi|116061921|emb|CAL52639.1|  5'-nucleotidase (ISS) [Ostreococcus tauri]
Length=633

 Score = 31.6 bits (70),  Expect = 1.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
 Frame = +2

Query  110  WWGSCTFGRRQI----SGNAERCVGTPRF  184
            WWG+ TFG+ Q+    +G+   C G P+F
Sbjct  284  WWGARTFGKLQVEFDSNGDVTSCTGKPQF  312


>gi|62732810|gb|AAX94929.1|  retrotransposon protein, putative, unclassified [Oryza sativa 
(japonica cultivar-group)]
 gi|77550197|gb|ABA92994.1|  retrotransposon protein, putative, unclassified [Oryza sativa 
(japonica cultivar-group)]
Length=730

 Score = 30.8 bits (68),  Expect = 1.9
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 0/39 (0%)
 Frame = -1

Query  190  TRKPWRSNTSFSIPRYLSPSKCTTTPPNPKSRTIRRDPN  74
            TRKP    T+  +P+  +P K T + P PK R   R P+
Sbjct  312  TRKPGDRETTKKLPKQATPRKKTFSRPAPKIRKSSRKPS  350


>gi|18266643|gb|AAL67589.1|AC018929_11  putative gypsy-type retrotransposon protein [Oryza sativa]
 gi|31433657|gb|AAP55141.1|  retrotransposon protein, putative, unclassified [Oryza sativa 
(japonica cultivar-group)]
Length=638

 Score = 30.8 bits (68),  Expect = 1.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 0/39 (0%)
 Frame = -1

Query  190  TRKPWRSNTSFSIPRYLSPSKCTTTPPNPKSRTIRRDPN  74
            TR+P    T+  +P+  +P K T++ P PK R   R P+
Sbjct  355  TRRPGDRETTKKLPKQATPRKKTSSRPAPKIRKSSRKPS  393


>gi|116317880|emb|CAH65909.1|  H0207B04.10 [Oryza sativa (indica cultivar-group)]
Length=1409

 Score = 30.0 bits (66),  Expect = 3.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query  145  YLSPSKCTTTPPNPKSRT--IRRDPNLNLQRMDRLIGGGEEWEL  20
            YL  S+   TPP P+S    +R  P L+  ++  L+G  EE  L
Sbjct  534  YLRLSQLVPTPPEPRSMAFFLRYSPGLDKNKIGELLGDPEEQSL  577


>gi|38344114|emb|CAE01721.2|  OSJNBb0050O03.11 [Oryza sativa (japonica cultivar-group)]
Length=1407

 Score = 30.0 bits (66),  Expect = 3.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query  145  YLSPSKCTTTPPNPKSRT--IRRDPNLNLQRMDRLIGGGEEWEL  20
            YL  S+   TPP P+S    +R  P L+  ++  L+G  EE  L
Sbjct  534  YLRLSQLVPTPPEPRSMAFFLRYSPGLDKNKIGELLGDPEEQSL  577


>gi|6056391|gb|AAF02855.1|AC009324_4  Similar to retrotransposon proteins [Arabidopsis thaliana]
Length=1522

 Score = 29.6 bits (65),  Expect = 4.3
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
 Frame = -3

Query  191  DKETLAFQHIFQHSQ-------IFVSFQMYNY--PTKPEISNYPTRSKPQPPT  60
            D+ T  F+ I+ H         +   F+ +++  PT+P+ S YP  S PQP T
Sbjct  741  DENTHPFESIYSHLHPQDKTPLLEAWFKSFHHVTPTQPDQSRYPVSSIPQPET  793


>gi|77554809|gb|ABA97605.1|  retrotransposon protein, putative, unclassified [Oryza sativa 
(japonica cultivar-group)]
Length=648

 Score = 29.6 bits (65),  Expect = 4.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 0/38 (0%)
 Frame = -1

Query  187  RKPWRSNTSFSIPRYLSPSKCTTTPPNPKSRTIRRDPN  74
            RKP    T   +P+  +P K T++ P PK R   R P+
Sbjct  286  RKPGDKETIGKLPKQANPKKKTSSRPMPKIRKSSRKPS  323


>gi|92867283|gb|ABE77617.1|  conserved hypothetical protein [Medicago truncatula]
Length=412

 Score = 28.9 bits (63),  Expect = 7.3
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query  202  RLTQTRKPWRSNTSFSI--PRYLSPSKCTTTPPNPKSRTIRRDPNLNL  65
            R TQ R P RSN++F I  P +  P        NP+S +   +  +NL
Sbjct  126  RETQNRNPRRSNSTFHIHTPSFCQPVSVEKQKHNPESSSRINNVGINL  173


>gi|19697423|gb|AAL93058.1|AC093180_5  putative gypsy-type polyprotein [Oryza sativa (japonica cultivar-group)]
 gi|50897328|gb|AAT85779.1|  putative gypsy type transposon [Oryza sativa (japonica cultivar-group)]
 gi|108709083|gb|ABF96878.1|  retrotransposon protein, putative, unclassified [Oryza sativa 
(japonica cultivar-group)]
Length=431

 Score = 28.9 bits (63),  Expect = 7.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 0/39 (0%)
 Frame = -1

Query  190  TRKPWRSNTSFSIPRYLSPSKCTTTPPNPKSRTIRRDPN  74
            TR+P    T+  +P+  +P K  ++ P PK R   R P+
Sbjct  293  TRRPGDRETTKKLPKQATPRKKASSRPAPKIRKSSRKPS  331


>gi|21553710|gb|AAM62803.1|  amino acid carrier, putative [Arabidopsis thaliana]
Length=476

 Score = 28.9 bits (63),  Expect = 7.3
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
 Frame = -3

Query  284  RWSTNWICV------CCLISYRPTNGSSKGATISFNSDK  186
            RWST W+C+      C ++S     GS  G  +   S K
Sbjct  432  RWSTRWVCLQVFSLGCLVVSIAAAAGSIAGVLLDLKSYK  470


>gi|15223930|ref|NP_177862.1|  AAP3; amino acid permease [Arabidopsis thaliana]
 gi|11079491|gb|AAG29203.1|AC078898_13  amino acid carrier, putative [Arabidopsis thaliana]
 gi|3970652|emb|CAA54630.1|  amino acid permease [Arabidopsis thaliana]
 gi|20466644|gb|AAM20639.1|  putative amino acid carrier [Arabidopsis thaliana]
 gi|22136454|gb|AAM91305.1|  putative amino acid carrier [Arabidopsis thaliana]
Length=476

 Score = 28.9 bits (63),  Expect = 7.3
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
 Frame = -3

Query  284  RWSTNWICV------CCLISYRPTNGSSKGATISFNSDK  186
            RWST W+C+      C ++S     GS  G  +   S K
Sbjct  432  RWSTRWVCLQVFSLGCLVVSIAAAAGSIAGVLLDLKSYK  470


>gi|92896872|gb|ABE93384.1|  Retrotransposon gag protein; Retrovirus capsid, C-terminal [Medicago 
truncatula]
Length=526

 Score = 28.5 bits (62),  Expect = 9.5
 Identities = 9/13 (69%), Positives = 13/13 (100%), Gaps = 0/13 (0%)
 Frame = -2

Query  147  DICLLPNVQLPHQ  109
            D+CL+PNVQ+PH+
Sbjct  183  DLCLVPNVQIPHK  195


>gi|92895551|gb|ABE92744.1|  RNA-directed DNA polymerase (Reverse transcriptase); Integrase, 
catalytic region; Ribonuclease H; Retrotransposon gag protein 
[Medicago truncatula]
Length=2216

 Score = 28.5 bits (62),  Expect = 9.5
 Identities = 9/13 (69%), Positives = 13/13 (100%), Gaps = 0/13 (0%)
 Frame = -2

Query  147  DICLLPNVQLPHQ  109
            D+CL+PNVQ+PH+
Sbjct  197  DLCLVPNVQIPHK  209


>gi|92879347|gb|ABE85484.1|  Retrotransposon gag protein; Retrovirus capsid, C-terminal [Medicago 
truncatula]
Length=488

 Score = 28.5 bits (62),  Expect = 9.5
 Identities = 9/13 (69%), Positives = 13/13 (100%), Gaps = 0/13 (0%)
 Frame = -2

Query  147  DICLLPNVQLPHQ  109
            D+CL+PNVQ+PH+
Sbjct  187  DLCLVPNVQIPHK  199


>gi|92875550|gb|ABE83492.1|  RNA-directed DNA polymerase (Reverse transcriptase); Integrase, 
catalytic region; Peptidase aspartic, active site; Ribonuclease 
H; Retrotransposon gag protein; Retrovirus capsid, C-terminal 
[Medicago truncatula]
Length=2274

 Score = 28.5 bits (62),  Expect = 9.5
 Identities = 9/13 (69%), Positives = 13/13 (100%), Gaps = 0/13 (0%)
 Frame = -2

Query  147  DICLLPNVQLPHQ  109
            D+CL+PNVQ+PH+
Sbjct  197  DLCLVPNVQIPHK  209


>gi|92867300|gb|ABE77634.1|  Retrotransposon gag protein; Retrovirus capsid, C-terminal [Medicago 
truncatula]
Length=479

 Score = 28.5 bits (62),  Expect = 9.5
 Identities = 9/13 (69%), Positives = 13/13 (100%), Gaps = 0/13 (0%)
 Frame = -2

Query  147  DICLLPNVQLPHQ  109
            D+CL+PNVQ+PH+
Sbjct  194  DLCLVPNVQIPHK  206

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 11, 2007  5:57 PM
  Number of letters in database: 101,016,998
  Number of sequences in database:  283,237
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283237
Number of Hits to DB: 335
Number of extensions: 3
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 445
Length of database: 101016998
Length adjustment: 103
Effective length of query: 342
Effective length of database: 71843587
Effective search space: 3232961415
Effective search space used: 3232961415
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 62 (28.5 bits)