Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168856204-8139-121539989462.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,457,254 sequences; 1,532,736,548 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig7 Length=488
Score E Sequences producing significant alignments: (Bits) Value gi|115457076|ref|NP_001052138.1| Os04g0166600 [Oryza sativa (... 112 8e-25 gi|38346468|emb|CAD39573.2| OSJNBa0019G23.16 [Oryza sativa (j... 112 8e-25 gi|115481666|ref|NP_001064426.1| Os10g0358600 [Oryza sativa (... 88.6 1e-17 gi|78708341|gb|ABB47316.1| expressed protein [Oryza sativa (japo 88.6 1e-17 gi|85070180|gb|ABC69763.1| unknown [Vitis pseudoreticulata] 85.5 8e-17 gi|8778446|gb|AAF79454.1|AC025808_36 F18O14.5 [Arabidopsis thali 80.1 4e-15 gi|18394724|ref|NP_564079.1| unknown protein [Arabidopsis tha... 80.1 4e-15 gi|15222092|ref|NP_177643.1| unknown protein [Arabidopsis tha... 77.8 2e-14 gi|38567956|emb|CAD39696.3| OSJNBb0115I21.12 [Oryza sativa (japo 42.0 6e-10 gi|18767383|gb|AAL79349.1|AC099402_13 Hypothetical protein [Oryz 58.5 1e-08 gi|18057114|gb|AAL58137.1|AC093093_10 hypothetical protein [Oryz 58.5 1e-08 gi|48716308|dbj|BAD22921.1| hypothetical protein [Oryza sativa ( 45.8 7e-05 gi|115449851|ref|NP_001048567.1| Os02g0823200 [Oryza sativa (... 43.5 4e-04 gi|116059598|emb|CAL55305.1| unnamed protein product [Ostreococc 33.5 0.38 gi|92892924|gb|ABE91460.1| Zinc finger, BED-type predicted; H... 29.6 5.5 gi|42567541|ref|NP_195692.2| unknown protein [Arabidopsis tha... 29.6 5.5 gi|3080451|emb|CAA18768.1| hypothetical protein [Arabidopsis ... 29.6 5.5 gi|27754425|gb|AAO22661.1| unknown protein [Arabidopsis thaliana 29.6 5.5 gi|108710088|gb|ABF97883.1| retrotransposon protein, putative... 28.9 9.4 gi|62533251|dbj|BAD95575.1| chromosome associate protein subunit 28.9 9.4 gi|15227758|ref|NP_179869.1| AtGRF1 (GROWTH-REGULATING FACTOR... 28.9 9.4 gi|29373952|emb|CAD71256.1| asparagine synthetase 3 [Lotus japon 28.9 9.4 gi|19920094|gb|AAM08526.1|AC068654_28 Hypothetical protein wi... 28.9 9.4
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 11, 2007 5:57 PM Number of letters in database: 101,016,998 Number of sequences in database: 283,237 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283237 Number of Hits to DB: 325 Number of extensions: 6 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 488 Length of database: 101016998 Length adjustment: 104 Effective length of query: 384 Effective length of database: 71560350 Effective search space: 4150500300 Effective search space used: 4150500300 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 63 (28.9 bits)