Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168922172-4983-147463996273.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig10 Length=441
Score E Sequences producing significant alignments: (Bits) Value gi|30024110|emb|CAC84677.1| putative histone H2A [Pinus pinaster 162 6e-40 gi|115482036|ref|NP_001064611.1| Os10g0418000 [Oryza sativa (... 159 4e-39 gi|115450897|ref|NP_001049049.1| Os03g0162200 [Oryza sativa (... 159 4e-39 gi|115455263|ref|NP_001051232.1| Os03g0743400 [Oryza sativa (... 159 5e-39 gi|15232536|ref|NP_191019.1| DNA binding [Arabidopsis thalian... 155 7e-38 gi|15224957|ref|NP_181415.1| DNA binding [Arabidopsis thalian... 153 3e-37 gi|119358781|emb|CAL51996.2| H2a Histone H2A, probable (IC) [Ost 152 4e-37 gi|15219078|ref|NP_175683.1| DNA binding [Arabidopsis thalian... 151 7e-37 gi|6319146|gb|AAF07182.1| H2A protein [Oryza sativa] 151 1e-36 gi|92888525|gb|ABE89451.1| Histone H2A; Histone-fold [Medicag... 150 1e-36 gi|15236314|ref|NP_193093.1| DNA binding [Arabidopsis thalian... 111 1e-24 gi|121985|sp|P16866|H2A4_VOLCA Histone H2A-IV >gi|170658|gb|AAA3 108 6e-24 gi|571481|gb|AAA98453.1| histone H2A 107 1e-23 gi|27311795|gb|AAO00863.1| Unknown protein [Arabidopsis thaliana 107 1e-23 gi|1708102|sp|P50567|H2A_CHLRE Histone H2A >gi|571473|gb|AAA9... 107 1e-23 gi|121981|sp|P16865|H2A3_VOLCA Histone H2A-III >gi|170655|gb|AAA 107 1e-23 gi|115488866|ref|NP_001066920.1| Os12g0530000 [Oryza sativa (... 106 3e-23 gi|115455011|ref|NP_001051106.1| Os03g0721900 [Oryza sativa (... 106 3e-23 gi|116059219|emb|CAL54926.1| Histone 2A (ISS) [Ostreococcus taur 106 4e-23 gi|15223948|ref|NP_172363.1| DNA binding [Arabidopsis thalian... 106 4e-23 gi|75282511|sp|Q43312|H2A7_WHEAT Protein H2A.7 (wcH2A-4) (wcH... 105 5e-23 gi|115472633|ref|NP_001059915.1| Os07g0545400 [Oryza sativa (... 105 8e-23 gi|15214035|sp|O65759|H2AX_CICAR Histone H2AX >gi|3204129|emb... 105 8e-23 gi|462234|sp|P35063|H2AX_PICAB Histone H2AX >gi|297871|emb|CA... 105 8e-23 gi|15221875|ref|NP_175868.1| DNA binding [Arabidopsis thalian... 105 8e-23 gi|21617982|gb|AAM67032.1| histone H2A-like protein [Arabidopsis 104 1e-22 gi|115476496|ref|NP_001061844.1| Os08g0427700 [Oryza sativa (... 104 1e-22 gi|15239697|ref|NP_200275.1| RAT5 (RESISTANT TO AGROBACTERIUM... 104 1e-22 gi|15232330|ref|NP_188703.1| DNA binding [Arabidopsis thalian... 104 1e-22 gi|15237024|ref|NP_194453.1| DNA binding [Arabidopsis thalian... 104 1e-22 gi|75282487|sp|Q43208|H2A4_WHEAT Histone H2A.4 >gi|17467155|g... 104 1e-22 gi|115488402|ref|NP_001066688.1| Os12g0438000 [Oryza sativa (... 104 1e-22 gi|115472631|ref|NP_001059914.1| Os07g0545300 [Oryza sativa (... 104 1e-22 gi|2317760|gb|AAB66346.1| H2A homolog [Pinus taeda] 103 3e-22 gi|15223708|ref|NP_175517.1| DNA binding [Arabidopsis thalian... 103 3e-22 gi|115461717|ref|NP_001054458.1| Os05g0113900 [Oryza sativa (... 102 4e-22 gi|6009909|dbj|BAA85117.1| histone H2A-like protein [Solanum mel 102 4e-22 gi|15241857|ref|NP_195876.1| DNA binding [Arabidopsis thalian... 102 5e-22 gi|21593507|gb|AAM65474.1| putative histone H2A [Arabidopsis tha 101 9e-22 gi|62286683|sp|Q9M531|H2A_EUPES Histone H2A >gi|7649159|gb|AA... 101 9e-22 gi|115464325|ref|NP_001055762.1| Os05g0461400 [Oryza sativa (... 101 1e-21 gi|42565387|gb|AAS20970.1| histone H2A [Hyacinthus orientalis] 101 1e-21 gi|108936003|sp|Q1S053|H2A3_MEDTR Probable histone H2A.3 >gi|... 100 2e-21 gi|108936001|sp|Q2HU68|H2A1_MEDTR Probable histone H2A.1 >gi|... 100 2e-21 gi|121982|sp|P02277|H2A3_WHEAT Histone H2A.2.2 100 2e-21 gi|685035|gb|AAB31111.1| histone H2A homolog [Phaseolus vulga... 100 3e-21 gi|122006|sp|P25470|H2A1_PEA Histone H2A.1 100 3e-21 gi|108936002|sp|Q2HU65|H2A2_MEDTR Probable histone H2A.2 >gi|... 99.8 3e-21 gi|75282488|sp|Q43213|H2A5_WHEAT Protein H2A.5 (wcH2A-2) >gi|... 99.8 3e-21 gi|78100001|sp|P02275|H2A1_WHEAT Histone H2A.1 (wcH2A-9) >gi|... 99.8 3e-21 gi|115436786|ref|NP_001043136.1| Os01g0502700 [Oryza sativa (... 99.8 3e-21 gi|1161302|gb|AAB00193.1| histone H2A [Triticum aestivum] >gi... 99.4 4e-21 gi|121974|sp|P02276|H2A2_WHEAT Histone H2A.2.1 99.4 4e-21 gi|47026919|gb|AAT08680.1| histone H2A [Hyacinthus orientalis] 99.0 6e-21 gi|47026912|gb|AAT08677.1| histone H2A [Hyacinthus orientalis] 99.0 6e-21 gi|5777792|emb|CAB53509.1| histone H2A [Brassica napus] 99.0 6e-21 gi|60172173|gb|AAX14476.1| putative histone 2a [Gossypium hirsut 99.0 6e-21 gi|15238549|ref|NP_200795.1| DNA binding [Arabidopsis thalian... 98.6 8e-21 gi|729669|sp|P40281|H2A2_PEA Histone H2A.2 >gi|498896|gb|AAA8694 97.8 1e-20 gi|75282489|sp|Q43214|H2A6_WHEAT Protein H2A.6 (wcH2A-3) >gi|... 97.8 1e-20 gi|122007|sp|P19177|H2A_PETCR Histone H2A >gi|20448|emb|CAA37... 97.8 1e-20 gi|729671|sp|P40280|H2A_MAIZE Histone H2A >gi|473603|gb|AAB04687 97.4 2e-20 gi|122003|sp|P25469|H2A1_LYCES Histone H2A.1 (LeH2A-1) 97.4 2e-20 gi|15241016|ref|NP_198119.1| DNA binding [Arabidopsis thalian... 97.4 2e-20 gi|27529852|dbj|BAC53941.1| H2A histone [Nicotiana tabacum] 96.3 4e-20 gi|45680447|gb|AAS75248.1| putative histone H2A [Oryza sativa (j 92.0 7e-19 gi|116055436|emb|CAL58104.1| Histone 2A (ISS) [Ostreococcus taur 80.9 2e-15 gi|1228074|emb|CAA65069.1| histone h2a homologue [Allium cepa] 75.5 7e-14 gi|116060719|emb|CAL57197.1| Histone 2A (ISS) [Ostreococcus taur 72.0 8e-13 gi|62149085|dbj|BAD93602.1| hypothetical protein [Cucumis melo] 68.6 8e-12 gi|75311054|sp|Q9LD75|H2A2_LILLO Histone H2A.2 (GH2A) >gi|809... 67.8 1e-11 gi|75315123|sp|Q9XG56|H2A1_LILLO Histone H2A.1 (GcH2A) >gi|45... 64.3 2e-10 gi|87241505|gb|ABD33363.1| Histone H2A; Histone-fold [Medicago t 40.0 0.003 gi|92881619|gb|ABE86337.1| Histone H2A; Histone-fold [Medicago t 37.7 0.016 gi|115467386|ref|NP_001057292.1| Os06g0250300 [Oryza sativa (... 37.4 0.021 gi|52076789|dbj|BAD45733.1| hypothetical protein [Oryza sativ... 37.4 0.021 gi|38175648|dbj|BAD01355.1| hypothetical protein [Oryza sativ... 37.0 0.027 gi|92881323|gb|ABE86166.1| Histone H2A [Medicago truncatula] 34.7 0.13 gi|115469736|ref|NP_001058467.1| Os06g0698600 [Oryza sativa (... 31.6 1.1 gi|53792078|dbj|BAD54663.1| putative Exo70 exocyst complex su... 31.6 1.1 gi|116830907|gb|ABK28410.1| unknown [Arabidopsis thaliana] 31.2 1.5 gi|115454955|ref|NP_001051078.1| Os03g0716200 [Oryza sativa (... 31.2 1.5 gi|91805829|gb|ABE65643.1| unknown [Arabidopsis thaliana] 31.2 1.5 gi|9392682|gb|AAF87259.1|AC068562_6 Contains similarity to se... 31.2 1.5 gi|18395108|ref|NP_564169.1| unknown protein [Arabidopsis thalia 31.2 1.5 gi|15218576|ref|NP_174690.1| ATP binding / carbohydrate bindi... 30.8 1.9 gi|10092255|gb|AAG12668.1|AC027033_3 hypothetical protein; 23726 30.0 3.3 gi|15230094|ref|NP_189629.1| ATP binding / ATPase [Arabidopsi... 30.0 3.3 gi|30690518|ref|NP_850460.1| CCA1 (CIRCADIAN CLOCK ASSOCIATED... 29.6 4.3 gi|47497313|dbj|BAD19355.1| hypothetical protein [Oryza sativa ( 29.6 4.3 gi|70712|pir||HSWT93 histone H2A.3 - wheat (fragment) 29.6 4.3 gi|3688191|emb|CAA08994.1| MAP3K alpha protein kinase [Arabidops 29.3 5.6 gi|4204912|gb|AAD10848.1| MEK kinase [Arabidopsis thaliana] 29.3 5.6 gi|68035567|gb|AAY84873.1| alternative splicing regulator [Triti 29.3 5.6 gi|18404528|ref|NP_564635.1| MAP3KA; ATP binding / kinase/ pr... 29.3 5.6 gi|30695537|ref|NP_849803.1| MAP3KA; ATP binding / kinase/ pr... 29.3 5.6 gi|113208410|gb|AAP45164.2| Disease resistance protein RGA2, ... 28.9 7.3 gi|109289910|gb|AAP45188.2| Disease resistance protein RGA2, ... 28.9 7.3 gi|16930437|gb|AAL31904.1|AF419572_1 At1g53570/F22G10_18 [Arabid 28.9 7.3 gi|46576968|sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein R... 28.9 7.3
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 266 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 441 Length of database: 101054579 Length adjustment: 102 Effective length of query: 339 Effective length of database: 72152981 Effective search space: 3246884145 Effective search space used: 3246884145 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 62 (28.5 bits)