RID=1168921787-22763-126337545465.BLASTQ1, Contig2

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168921787-22763-126337545465.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig2
Length=248

Distribution of 12 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|116309951|emb|CAH66982.1|  H0714H04.9 [Oryza sativa (indica cu  46.6    3e-05
gi|115460618|ref|NP_001053909.1|  Os04g0620700 [Oryza sativa (...  46.6    3e-05 
gi|940288|gb|AAA74208.1|  protein localized in the nucleoli of pe  38.5    0.007
gi|15229678|ref|NP_188491.1|  nucleic acid binding [Arabidopsi...  33.1    0.30  
gi|21700195|dbj|BAC02896.1|  tobacco nucleolin [Nicotiana tabacum  30.8    1.5   
gi|115475163|ref|NP_001061178.1|  Os08g0192900 [Oryza sativa (...  30.4    1.9   
gi|15222009|ref|NP_175322.1|  nucleic acid binding [Arabidopsi...  30.0    2.5   
gi|10441442|gb|AAG17043.1|AF187822_1  transposase [Zea mays]       29.6    3.3  
gi|806299|gb|AAA66266.1|  unknown protein                          29.3    4.3  
gi|225005|prf||1206239A  ORF 1                                     29.3    4.3  
gi|92881387|gb|ABE86228.1|  hypothetical protein MtrDRAFT_AC15...  28.1    9.6  
gi|9294322|dbj|BAB02219.1|  unnamed protein product [Arabidopsis   28.1    9.6

Alignments

 

>gi|116309951|emb|CAH66982.1|  H0714H04.9 [Oryza sativa (indica cultivar-group)]
Length=704

 Score = 46.6 bits (109),  Expect = 3e-05
 Identities = 36/58 (62%), Positives = 43/58 (74%), Gaps = 0/58 (0%)
 Frame = +2

Query  56   MGKSSKKSNVEvaavpvsvppaksakkGKRDAEEAIEKPVSAKKQRSEVEEAVRRQED  229
            MGKSSKKS VEVA   VSV   KS KKGKR+AE+ IEK VSAKKQ++  E+ V  +E+
Sbjct  1    MGKSSKKSAVEVAPTSVSVSEGKSGKKGKRNAEDEIEKAVSAKKQKTVREKVVPSKEE  58


>gi|115460618|ref|NP_001053909.1|  Os04g0620700 [Oryza sativa (japonica cultivar-group)]
 gi|38344339|emb|CAD41755.2|  OSJNBa0058K23.21 [Oryza sativa (japonica cultivar-group)]
 gi|113565480|dbj|BAF15823.1|  Os04g0620700 [Oryza sativa (japonica cultivar-group)]
Length=707

 Score = 46.6 bits (109),  Expect = 3e-05
 Identities = 36/58 (62%), Positives = 43/58 (74%), Gaps = 0/58 (0%)
 Frame = +2

Query  56   MGKSSKKSNVEvaavpvsvppaksakkGKRDAEEAIEKPVSAKKQRSEVEEAVRRQED  229
            MGKSSKKS VEVA   VSV   KS KKGKR+AE+ IEK VSAKKQ++  E+ V  +E+
Sbjct  1    MGKSSKKSAVEVAPTSVSVSEGKSGKKGKRNAEDEIEKAVSAKKQKTVREKVVPSKEE  58


>gi|940288|gb|AAA74208.1|  protein localized in the nucleoli of pea nuclei; ORF; putative
Length=611

 Score = 38.5 bits (88),  Expect = 0.007
 Identities = 36/57 (63%), Positives = 42/57 (73%), Gaps = 3/57 (5%)
 Frame = +2

Query  56   MGKSSKKSNVEvaavpvsvppaksakkGKRDAEEAIEKPVSAKKQRSEVEEAVRRQE  226
            MGKSSKKS  +V A PV V P KS KKGKR AEE I+K VSAKKQ+  VEE + +Q+
Sbjct  1    MGKSSKKSATKVDAAPVVVSPVKSGKKGKRQAEEEIKK-VSAKKQK--VEEVIAKQK  54


>gi|15229678|ref|NP_188491.1|  nucleic acid binding [Arabidopsis thaliana]
 gi|91806437|gb|ABE65946.1|  nucleolin [Arabidopsis thaliana]
Length=636

 Score = 33.1 bits (74),  Expect = 0.30
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
 Frame = +2

Query  56   MGKSSKKSNVEvaavpvsvppaksakkGKRDAEEAIEKPVSAKKQRSEVEEAVRRQE  226
            MGKSSKKS  EV        P K    GKRDAEE ++  V+ KKQ+ E+ + V++++
Sbjct  1    MGKSSKKSVTEVETPASMTKPLKK---GKRDAEEDLDMQVT-KKQKKELIDVVQKEK  53


>gi|21700195|dbj|BAC02896.1|  tobacco nucleolin [Nicotiana tabacum]
Length=620

 Score = 30.8 bits (68),  Expect = 1.5
 Identities = 16/34 (47%), Positives = 25/34 (73%), Gaps = 2/34 (5%)
 Frame = +2

Query  137  GKRDAEEAIEKPVSAKKQRSE--VEEAVRRQEDN  232
            GKR+A E IEK +SAKKQ+ +  V +AV +++ +
Sbjct  26   GKREAGEEIEKIMSAKKQKKDMAVAQAVEKKKSD  59


>gi|115475163|ref|NP_001061178.1|  Os08g0192900 [Oryza sativa (japonica cultivar-group)]
 gi|40253662|dbj|BAD05605.1|  putative nucleolin [Oryza sativa (japonica cultivar-group)]
 gi|51449869|gb|AAU01907.1|  putative nucleolin [Oryza sativa (indica cultivar-group)]
 gi|113623147|dbj|BAF23092.1|  Os08g0192900 [Oryza sativa (japonica cultivar-group)]
Length=572

 Score = 30.4 bits (67),  Expect = 1.9
 Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query  56   MGKSSKKSNVEvaavpvsvppaksakkGKRDAEEAIEKPVSAKKQRS  196
            MGK+SKKS     A        K  K  KR+AE+ IEK VSAKKQ++
Sbjct  1    MGKASKKSVAVAVAPAAVPAKGKGGK--KREAEDEIEKAVSAKKQKA  45


>gi|15222009|ref|NP_175322.1|  nucleic acid binding [Arabidopsis thaliana]
 gi|11094815|gb|AAG29744.1|AC084414_12  nuM1 protein, putative [Arabidopsis thaliana]
 gi|28973759|gb|AAO64195.1|  putative nucleolin [Arabidopsis thaliana]
Length=557

 Score = 30.0 bits (66),  Expect = 2.5
 Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 0/30 (0%)
 Frame = +2

Query  137  GKRDAEEAIEKPVSAKKQRSEVEEAVRRQE  226
            GKR+ E+ I+  VS KKQ+ +V  AV++++
Sbjct  23   GKREPEDDIDTKVSLKKQKKDVIAAVQKEK  52


>gi|10441442|gb|AAG17043.1|AF187822_1  transposase [Zea mays]
Length=854

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +3

Query  36   HILVSIKWASLARSPTLRLLQFLCRFPLQNLLKKVRGMPRKQ*R  167
            H++V + W +L   P    +QF   +P++  LKK+R   R + R
Sbjct  727  HLIVHLPWEALVGGP----VQFRWMYPIERALKKLRASVRNKAR  766


>gi|806299|gb|AAA66266.1|  unknown protein
Length=897

 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +3

Query  36   HILVSIKWASLARSPTLRLLQFLCRFPLQNLLKKVRGMPRKQ*R  167
            H+LV + W +L   P     QF   +  +  LKK+RGM R + R
Sbjct  715  HLLVHLPWEALVGGPA----QFRWMYSQERELKKLRGMVRNKAR  754


>gi|225005|prf||1206239A  ORF 1
Length=905

 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +3

Query  36   HILVSIKWASLARSPTLRLLQFLCRFPLQNLLKKVRGMPRKQ*R  167
            H+LV + W +L   P     QF   +  +  LKK+RGM R + R
Sbjct  723  HLLVHLPWEALVGGPA----QFRWMYSQERELKKLRGMVRNKAR  762


>gi|92881387|gb|ABE86228.1|  hypothetical protein MtrDRAFT_AC152405g46v1 [Medicago truncatula]
Length=651

 Score = 28.1 bits (61),  Expect = 9.6
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +2

Query  53   KMGKSSKKSNVEvaavpvsvppaksakkGKRDAEEAIEKPV---SAKKQRSEVEEAVRRQ  223
            K  K SKKS  E  +   S    K   KG RD +EA+E+     + K+    +EEA+ R 
Sbjct  375  KSSKKSKKSKAESTSDAASEGSKKRKVKGNRDIKEAVEEAAEKWTVKEATVLLEEALTRG  434

Query  224  ED  229
            +D
Sbjct  435  KD  436


>gi|9294322|dbj|BAB02219.1|  unnamed protein product [Arabidopsis thaliana]
Length=610

 Score = 28.1 bits (61),  Expect = 9.6
 Identities = 13/30 (43%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
 Frame = +2

Query  137  GKRDAEEAIEKPVSAKKQRSEVEEAVRRQE  226
            GKRDAEE ++  V+ KKQ+ E+ + V++++
Sbjct  8    GKRDAEEDLDMQVT-KKQKKELIDVVQKEK  36

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 113
Number of extensions: 1
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 248
Length of database: 101054579
Length adjustment: 53
Effective length of query: 195
Effective length of database: 86037082
Effective search space: 2495075378
Effective search space used: 2495075378
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)