RID=1168921803-23543-119448797786.BLASTQ1, Contig3

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168921803-23543-119448797786.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig3
Length=297

Distribution of 31 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|64420807|gb|AAY41426.1|  putative L24 ribosomal protein [Ipomo   145    3e-35
gi|92866965|gb|ABE77438.1|  Ribosomal protein L24/L26 [Medicago t   144    7e-35
gi|3747050|gb|AAC64166.1|  ribosomal protein L26 [Zea mays]         141    6e-34 
gi|12328551|dbj|BAB21209.1|  putative ribosomal protein L26 [O...   141    6e-34 
gi|15240766|ref|NP_201552.1|  structural constituent of riboso...   141    8e-34 
gi|62732715|gb|AAX94834.1|  ribosomal protein L24, putative [O...   140    1e-33
gi|115487356|ref|NP_001066165.1|  Os12g0150100 [Oryza sativa (...   140    1e-33 
gi|15229631|ref|NP_190560.1|  structural constituent of riboso...   137    9e-33 
gi|3914740|sp|Q39411|RL26_BRARA  60S ribosomal protein L26 >gi...   124    1e-28
gi|115434446|ref|NP_001041981.1|  Os01g0140500 [Oryza sativa (...   114    8e-26 
gi|62701693|gb|AAX92766.1|  ribosomal protein L24, putative [O...   107    1e-23
gi|116060722|emb|CAL57200.1|  60S ribosomal protein L26 (ISS) [Os   106    3e-23
gi|115484207|ref|NP_001065765.1|  Os11g0151300 [Oryza sativa (...  64.3    1e-18 
gi|115487354|ref|NP_001066164.1|  Os12g0150000 [Oryza sativa (...  75.9    4e-14 
gi|115469576|ref|NP_001058387.1|  Os06g0683200 [Oryza sativa (...  31.6    0.88  
gi|24414118|dbj|BAC22362.1|  hypothetical protein [Oryza sativ...  31.2    1.2   
gi|30680726|ref|NP_192575.2|  structural constituent of riboso...  30.8    1.5   
gi|75207701|sp|Q9STN3|SPT51_ARATH  Putative transcription elon...  30.8    1.5  
gi|56784197|dbj|BAD81582.1|  unknown protein [Oryza sativa (ja...  30.0    2.6  
gi|50251697|dbj|BAD27602.1|  hypothetical protein [Oryza sativ...  29.6    3.4  
gi|77551128|gb|ABA93925.1|  hypothetical protein LOC_Os11g3113...  29.3    4.4  
gi|15226248|ref|NP_180968.1|  structural constituent of riboso...  29.3    4.4   
gi|115468376|ref|NP_001057787.1|  Os06g0534800 [Oryza sativa (...  28.9    5.7   
gi|22327601|ref|NP_680397.1|  unknown protein [Arabidopsis thalia  28.9    5.7   
gi|115478130|ref|NP_001062660.1|  Os09g0246500 [Oryza sativa (...  28.9    5.7   
gi|38637562|dbj|BAD03813.1|  hypothetical protein [Oryza sativa (  28.9    5.7   
gi|116055224|emb|CAL57620.1|  unnamed protein product [Ostreococc  28.5    7.5  
gi|15209176|gb|AAK91894.1|AC091627_7  Putative I-box binding fact  28.5    7.5  
gi|115445081|ref|NP_001046320.1|  Os02g0220800 [Oryza sativa (...  28.5    7.5   
gi|21554378|gb|AAM63485.1|  cytochrome c oxidase subunit, putativ  28.1    9.8

Alignments

 

>gi|64420807|gb|AAY41426.1|  putative L24 ribosomal protein [Ipomoea batatas]
Length=146

 Score =  145 bits (367),  Expect = 3e-35
 Identities = 72/79 (91%), Positives = 75/79 (94%), Gaps = 0/79 (0%)
 Frame = +2

Query  53   MKYNPRVSSSRRKCRKAHFTAPSXVRRVLMSAPLSSDLRNKYNVRSVPVRKDDEVQVVRG  232
            MKYNPRVSSSRRK RKAHFTAPS VRRVLMSAPLS+D R+KYNVRS+PVRKDDEVQVVRG
Sbjct  1    MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSADQRSKYNVRSMPVRKDDEVQVVRG  60

Query  233  TYKGREGKVVQVYRXKWVI  289
            TYKGREGKVVQVYR KWVI
Sbjct  61   TYKGREGKVVQVYRKKWVI  79


>gi|92866965|gb|ABE77438.1|  Ribosomal protein L24/L26 [Medicago truncatula]
Length=146

 Score =  144 bits (364),  Expect = 7e-35
 Identities = 71/79 (89%), Positives = 75/79 (94%), Gaps = 0/79 (0%)
 Frame = +2

Query  53   MKYNPRVSSSRRKCRKAHFTAPSXVRRVLMSAPLSSDLRNKYNVRSVPVRKDDEVQVVRG  232
            MK+NPRVSSSRRK RKAHFTAPS VRRVLMSAPLS DLR+KYNVRS+PVRKDDEVQVVRG
Sbjct  1    MKFNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSGDLRSKYNVRSLPVRKDDEVQVVRG  60

Query  233  TYKGREGKVVQVYRXKWVI  289
            T+KGREGKVVQVYR KWVI
Sbjct  61   TFKGREGKVVQVYRRKWVI  79


>gi|3747050|gb|AAC64166.1|  ribosomal protein L26 [Zea mays]
Length=121

 Score =  141 bits (356),  Expect = 6e-34
 Identities = 68/79 (86%), Positives = 75/79 (94%), Gaps = 0/79 (0%)
 Frame = +2

Query  53   MKYNPRVSSSRRKCRKAHFTAPSXVRRVLMSAPLSSDLRNKYNVRSVPVRKDDEVQVVRG  232
            MK NPRV+SSRRKCRKAHFTAPS VRRVLMSA LS++LR+KYNVRS+P+RKDDEVQVVRG
Sbjct  1    MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAGLSTELRHKYNVRSIPIRKDDEVQVVRG  60

Query  233  TYKGREGKVVQVYRXKWVI  289
            TYKGREGKVVQVYR +WVI
Sbjct  61   TYKGREGKVVQVYRRRWVI  79


>gi|12328551|dbj|BAB21209.1|  putative ribosomal protein L26 [Oryza sativa (japonica cultivar-group)]
Length=157

 Score =  141 bits (356),  Expect = 6e-34
 Identities = 68/79 (86%), Positives = 75/79 (94%), Gaps = 0/79 (0%)
 Frame = +2

Query  53   MKYNPRVSSSRRKCRKAHFTAPSXVRRVLMSAPLSSDLRNKYNVRSVPVRKDDEVQVVRG  232
            MK NPRV+SSRRKCRKAHFTAPS VRRVLMSA LSS+LR+KYNVRS+P+RKDDEVQVVRG
Sbjct  1    MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG  60

Query  233  TYKGREGKVVQVYRXKWVI  289
            +YKGREGKVVQVYR +WVI
Sbjct  61   SYKGREGKVVQVYRRRWVI  79


>gi|15240766|ref|NP_201552.1|  structural constituent of ribosome [Arabidopsis thaliana]
 gi|27734449|sp|Q9FJX2|RL262_ARATH  60S ribosomal protein L26-2
 gi|9757872|dbj|BAB08459.1|  60S ribosomal protein L26 [Arabidopsis thaliana]
 gi|17473656|gb|AAL38285.1|  60S ribosomal protein L26 [Arabidopsis thaliana]
 gi|20148599|gb|AAM10190.1|  60S ribosomal protein L26 [Arabidopsis thaliana]
 gi|21554514|gb|AAM63595.1|  60S ribosomal protein L26 [Arabidopsis thaliana]
Length=146

 Score =  141 bits (355),  Expect = 8e-34
 Identities = 68/79 (86%), Positives = 75/79 (94%), Gaps = 0/79 (0%)
 Frame = +2

Query  53   MKYNPRVSSSRRKCRKAHFTAPSXVRRVLMSAPLSSDLRNKYNVRSVPVRKDDEVQVVRG  232
            MK+NPRVSSSRRK RKAHFTAPS VRRVLMS+PLS DLRNK+NVRS+P+RKDDEVQVVRG
Sbjct  1    MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG  60

Query  233  TYKGREGKVVQVYRXKWVI  289
            T+KGREGKV+QVYR KWVI
Sbjct  61   TFKGREGKVMQVYRRKWVI  79


>gi|62732715|gb|AAX94834.1|  ribosomal protein L24, putative [Oryza sativa (japonica cultivar-group)]
Length=153

 Score =  140 bits (354),  Expect = 1e-33
 Identities = 68/79 (86%), Positives = 75/79 (94%), Gaps = 0/79 (0%)
 Frame = +2

Query  53   MKYNPRVSSSRRKCRKAHFTAPSXVRRVLMSAPLSSDLRNKYNVRSVPVRKDDEVQVVRG  232
            MK NPRV+SSRRKCRKAHFTAPS VRRVLMSA LS++LR+KYNVRS+PVRKDDEVQVVRG
Sbjct  1    MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPVRKDDEVQVVRG  60

Query  233  TYKGREGKVVQVYRXKWVI  289
            +YKGREGKVVQVYR +WVI
Sbjct  61   SYKGREGKVVQVYRRRWVI  79


>gi|115487356|ref|NP_001066165.1|  Os12g0150100 [Oryza sativa (japonica cultivar-group)]
 gi|77553015|gb|ABA95811.1|  60S ribosomal protein L26-1, putative, expressed [Oryza sativa 
(japonica cultivar-group)]
 gi|113648672|dbj|BAF29184.1|  Os12g0150100 [Oryza sativa (japonica cultivar-group)]
Length=150

 Score =  140 bits (353),  Expect = 1e-33
 Identities = 67/79 (84%), Positives = 75/79 (94%), Gaps = 0/79 (0%)
 Frame = +2

Query  53   MKYNPRVSSSRRKCRKAHFTAPSXVRRVLMSAPLSSDLRNKYNVRSVPVRKDDEVQVVRG  232
            MK NPRV+SSRRKCRKAHFTAPS VRRVLMSA LS++LR+KYNVRS+P+RKDDEVQVVRG
Sbjct  1    MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG  60

Query  233  TYKGREGKVVQVYRXKWVI  289
            +YKGREGKVVQVYR +WVI
Sbjct  61   SYKGREGKVVQVYRRRWVI  79


>gi|15229631|ref|NP_190560.1|  structural constituent of ribosome [Arabidopsis thaliana]
 gi|27735242|sp|P51414|RL261_ARATH  60S ribosomal protein L26-1
 gi|13877791|gb|AAK43973.1|AF370158_1  putative 60S ribosomal protein [Arabidopsis thaliana]
 gi|6723436|emb|CAB66929.1|  60S RIBOSOMAL PROTEIN-like [Arabidopsis thaliana]
 gi|16323426|gb|AAL15207.1|  putative 60S ribosomal protein [Arabidopsis thaliana]
 gi|23397084|gb|AAN31827.1|  putative 60S ribosomal protein [Arabidopsis thaliana]
Length=146

 Score =  137 bits (346),  Expect = 9e-33
 Identities = 66/79 (83%), Positives = 73/79 (92%), Gaps = 0/79 (0%)
 Frame = +2

Query  53   MKYNPRVSSSRRKCRKAHFTAPSXVRRVLMSAPLSSDLRNKYNVRSVPVRKDDEVQVVRG  232
            MKYNPRV+SSRRK RKAHFTA S  RRV+MS+PLS+DLR KYNVRS+P+RKDDEVQ+VRG
Sbjct  1    MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG  60

Query  233  TYKGREGKVVQVYRXKWVI  289
            TYKGREGKVVQVYR KWVI
Sbjct  61   TYKGREGKVVQVYRRKWVI  79


>gi|3914740|sp|Q39411|RL26_BRARA  60S ribosomal protein L26
 gi|2160300|dbj|BAA18941.1|  ribosomal protein [Brassica rapa]
Length=146

 Score =  124 bits (310),  Expect = 1e-28
 Identities = 60/79 (75%), Positives = 68/79 (86%), Gaps = 0/79 (0%)
 Frame = +2

Query  53   MKYNPRVSSSRRKCRKAHFTAPSXVRRVLMSAPLSSDLRNKYNVRSVPVRKDDEVQVVRG  232
            MKYNPRV+SSRR+ RK HFTA S  RRV MS+PLS+DLR KYNVRS+P+RKDDE Q+VRG
Sbjct  1    MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRG  60

Query  233  TYKGREGKVVQVYRXKWVI  289
            TYKGREGK+ QVYR K VI
Sbjct  61   TYKGREGKLXQVYRRKXVI  79


>gi|115434446|ref|NP_001041981.1|  Os01g0140500 [Oryza sativa (japonica cultivar-group)]
 gi|54290308|dbj|BAD61308.1|  putative ribosomal protein L26 [Oryza sativa (japonica cultivar-group)]
 gi|113531512|dbj|BAF03895.1|  Os01g0140500 [Oryza sativa (japonica cultivar-group)]
Length=129

 Score =  114 bits (286),  Expect = 8e-26
 Identities = 55/64 (85%), Positives = 61/64 (95%), Gaps = 0/64 (0%)
 Frame = +2

Query  53   MKYNPRVSSSRRKCRKAHFTAPSXVRRVLMSAPLSSDLRNKYNVRSVPVRKDDEVQVVRG  232
            MK NPRV+SSRRKCRKAHFTAPS VRRVLMSA LSS+LR+KYNVRS+P+RKDDEVQVVRG
Sbjct  1    MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG  60

Query  233  TYKG  244
            +YKG
Sbjct  61   SYKG  64


>gi|62701693|gb|AAX92766.1|  ribosomal protein L24, putative [Oryza sativa (japonica cultivar-group)]
 gi|108864003|gb|ABA91453.2|  60S ribosomal protein L26-1, putative, expressed [Oryza sativa 
(japonica cultivar-group)]
Length=140

 Score =  107 bits (267),  Expect = 1e-23
 Identities = 56/79 (70%), Positives = 62/79 (78%), Gaps = 13/79 (16%)
 Frame = +2

Query  53   MKYNPRVSSSRRKCRKAHFTAPSXVRRVLMSAPLSSDLRNKYNVRSVPVRKDDEVQVVRG  232
            MK NPRV+SSRRKCRKAHFTAPS VRRVLMSA LS++LR+KYN             VVRG
Sbjct  1    MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYN-------------VVRG  47

Query  233  TYKGREGKVVQVYRXKWVI  289
            +YKGREGKVVQVYR +WVI
Sbjct  48   SYKGREGKVVQVYRRRWVI  66


>gi|116060722|emb|CAL57200.1|  60S ribosomal protein L26 (ISS) [Ostreococcus tauri]
Length=154

 Score =  106 bits (264),  Expect = 3e-23
 Identities = 52/83 (62%), Positives = 65/83 (78%), Gaps = 0/83 (0%)
 Frame = +2

Query  41   RSDEMKYNPRVSSSRRKCRKAHFTAPSXVRRVLMSAPLSSDLRNKYNVRSVPVRKDDEVQ  220
            R   MKY+  V+SSRRK RKAHFTAPS  RR LMSA LS++L+ ++   +VP+R +DEV+
Sbjct  16   RRHAMKYSTAVTSSRRKTRKAHFTAPSSERRKLMSAALSAELKAQHGANAVPIRVNDEVR  75

Query  221  VVRGTYKGREGKVVQVYRXKWVI  289
            V RG++K REGKVVQVYR KWVI
Sbjct  76   VTRGSFKNREGKVVQVYRKKWVI  98


>gi|115484207|ref|NP_001065765.1|  Os11g0151300 [Oryza sativa (japonica cultivar-group)]
 gi|113644469|dbj|BAF27610.1|  Os11g0151300 [Oryza sativa (japonica cultivar-group)]
Length=163

 Score = 64.3 bits (155),  Expect(2) = 1e-18
 Identities = 29/32 (90%), Positives = 31/32 (96%), Gaps = 0/32 (0%)
 Frame = +2

Query  194  PVRKDDEVQVVRGTYKGREGKVVQVYRXKWVI  289
            PVRKDDEVQVVRG+YKGREGKVVQVYR +WVI
Sbjct  58   PVRKDDEVQVVRGSYKGREGKVVQVYRRRWVI  89


 Score = 47.4 bits (111),  Expect(2) = 1e-18
 Identities = 25/45 (55%), Positives = 28/45 (62%), Gaps = 0/45 (0%)
 Frame = +1

Query  43   KRRDEVQPESVELPAEVPEGALHGAVXRPAGADERAPLVGSPQQV  177
            +RR E Q    ELPA+VPEGALHGAV RP     R  L  +P QV
Sbjct  8    RRRHEAQSARDELPAQVPEGALHGAVVRPPRPHVRRALHRAPPQV  52


>gi|115487354|ref|NP_001066164.1|  Os12g0150000 [Oryza sativa (japonica cultivar-group)]
 gi|113648671|dbj|BAF29183.1|  Os12g0150000 [Oryza sativa (japonica cultivar-group)]
Length=283

 Score = 75.9 bits (185),  Expect = 4e-14
 Identities = 39/62 (62%), Positives = 44/62 (70%), Gaps = 0/62 (0%)
 Frame = -3

Query  238  VGATHDLDLVVLADGNRPNVVLVAEIRREGRAHQHPPDARRRREVRLPALPPGARHSRVV  59
            V   H L LVVLADG+  +VVLVAE+  EG  H+   D  RRREVRLPALPPGARH+ V 
Sbjct  135  VAPPHHLHLVVLADGDGADVVLVAELGGEGGGHEDAADGGRRREVRLPALPPGARHAWVA  194

Query  58   LH  53
            LH
Sbjct  195  LH  196


>gi|115469576|ref|NP_001058387.1|  Os06g0683200 [Oryza sativa (japonica cultivar-group)]
 gi|52076649|dbj|BAD45549.1|  putative 50S ribosomal protein L24, chloroplast precursor [Oryza 
sativa (japonica cultivar-group)]
 gi|52076895|dbj|BAD45908.1|  putative 50S ribosomal protein L24, chloroplast precursor [Oryza 
sativa (japonica cultivar-group)]
 gi|113596427|dbj|BAF20301.1|  Os06g0683200 [Oryza sativa (japonica cultivar-group)]
Length=190

 Score = 31.6 bits (70),  Expect = 0.88
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
 Frame = +2

Query  113  APSXVRRVLMSAPLSSDL----RNKYNVRSVPV------RKDDEVQVVRGTYKGREGKVV  262
            AP+ V+ ++ + P+   L    R K    S+PV      R  D VQV+ G  KG+ G+V 
Sbjct  38   APAGVKFMIKTCPIQMRLKRWERKKCKPNSLPVLHKMHVRIGDTVQVIAGREKGKVGEVT  97

Query  263  QVYR  274
            ++++
Sbjct  98   RLFK  101


>gi|24414118|dbj|BAC22362.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
 gi|24414233|dbj|BAC22473.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=208

 Score = 31.2 bits (69),  Expect = 1.2
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query  157  REGRAHQHPPDARRRREVRLPALPPGARHSRV  62
            R GR H  PP  RRRR  RL A+PP     R+
Sbjct  171  RGGRIHAAPPTTRRRRR-RLGAVPPAPHACRI  201


>gi|30680726|ref|NP_192575.2|  structural constituent of ribosome / transcription factor/ transcriptional 
elongation regulator [Arabidopsis thaliana]
Length=1029

 Score = 30.8 bits (68),  Expect = 1.5
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 0/26 (0%)
 Frame = +2

Query  191  VPVRKDDEVQVVRGTYKGREGKVVQV  268
            +P RK D V++V G Y+G  GK++ +
Sbjct  975  IPPRKSDRVKIVGGQYRGSTGKLIGI  1000


>gi|75207701|sp|Q9STN3|SPT51_ARATH  Putative transcription elongation factor SPT5 homolog 1
 gi|5731756|emb|CAB52557.1|  putative protein [Arabidopsis thaliana]
 gi|7267476|emb|CAB77960.1|  putative protein [Arabidopsis thaliana]
Length=1054

 Score = 30.8 bits (68),  Expect = 1.5
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 0/26 (0%)
 Frame = +2

Query  191   VPVRKDDEVQVVRGTYKGREGKVVQV  268
             +P RK D V++V G Y+G  GK++ +
Sbjct  1000  IPPRKSDRVKIVGGQYRGSTGKLIGI  1025


>gi|56784197|dbj|BAD81582.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|56784919|dbj|BAD82251.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
Length=59

 Score = 30.0 bits (66),  Expect = 2.6
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 0/26 (0%)
 Frame = -3

Query  139  QHPPDARRRREVRLPALPPGARHSRV  62
            +HPP   RR+  R P  P G RH R+
Sbjct  33   RHPPHGARRQHTRHPPRPRGQRHPRL  58


>gi|50251697|dbj|BAD27602.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
 gi|50252843|dbj|BAD29075.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=147

 Score = 29.6 bits (65),  Expect = 3.4
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query  29   PPPERSDEMKYNPRVSSSRRKCRKA--HFTAPSXVRRVLMSAPLSSDLRNKY  178
            PPP ++  +  +  +SSSR++CR+      A   V  V+ SAP SS + + Y
Sbjct  7    PPPLQASSLSQHFSLSSSRQRCRRRVDAIVAAVVVVIVVASAPPSSRVSSPY  58


>gi|77551128|gb|ABA93925.1|  hypothetical protein LOC_Os11g31130 [Oryza sativa (japonica cultivar-group)]
Length=144

 Score = 29.3 bits (64),  Expect = 4.4
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +1

Query  28   AAAGEKRRDEVQPESVELPAEVPEGALHGAVXRPAGADERAPLVGSPQQ  174
            A+A E+R+ + +P + EL AE        A    AGAD R P+VG P++
Sbjct  16   ASAVEERKKKKRP-AAELAAETSS---EEADSEAAGADRRRPVVGDPRR  60


>gi|15226248|ref|NP_180968.1|  structural constituent of ribosome / transcription initiation 
factor/ transcriptional elongation regulator [Arabidopsis thaliana]
 gi|75099912|sp|O80770|SPT52_ARATH  Putative transcription elongation factor SPT5 homolog 2
 gi|3337352|gb|AAC27397.1|  putative transcription elongation factor [Arabidopsis thaliana]
Length=990

 Score = 29.3 bits (64),  Expect = 4.4
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 0/22 (0%)
 Frame = +2

Query  209  DEVQVVRGTYKGREGKVVQVYR  274
            D V+V+ G  KG++G VVQ+Y+
Sbjct  593  DVVRVIEGPSKGKQGPVVQIYK  614


>gi|115468376|ref|NP_001057787.1|  Os06g0534800 [Oryza sativa (japonica cultivar-group)]
 gi|113595827|dbj|BAF19701.1|  Os06g0534800 [Oryza sativa (japonica cultivar-group)]
Length=356

 Score = 28.9 bits (63),  Expect = 5.7
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 0/34 (0%)
 Frame = +1

Query  34   AGEKRRDEVQPESVELPAEVPEGALHGAVXRPAG  135
            A ++RR  V   +   P     GA HG V RP G
Sbjct  166  AAQRRRGRVAAAAAAAPVRPVAGAAHGGVARPGG  199


>gi|22327601|ref|NP_680397.1|  unknown protein [Arabidopsis thaliana]
Length=195

 Score = 28.9 bits (63),  Expect = 5.7
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
 Frame = -3

Query  166  EIRREGRAHQHPPDARRRREVRL---PALPP-----GARHSRVVLHL  50
            EI R GR   H PDAR R E+++     +PP      AR S+V   L
Sbjct  73   EIARSGRVRSHLPDARIRSEMQMRDYRGIPPVSSSSSARPSQVARQL  119


>gi|115478130|ref|NP_001062660.1|  Os09g0246500 [Oryza sativa (japonica cultivar-group)]
 gi|48716695|dbj|BAD23378.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|48716848|dbj|BAD23546.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113630893|dbj|BAF24574.1|  Os09g0246500 [Oryza sativa (japonica cultivar-group)]
Length=309

 Score = 28.9 bits (63),  Expect = 5.7
 Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 11/55 (20%)
 Frame = -3

Query  196  GNRPNVVLVAEIRREGRAHQHPPDARRRREVRLPA----LPP-------GARHSR  65
            G RP     +  R   RA  H P +RRRR+  L A    LPP       GA HSR
Sbjct  245  GRRPMGTGCSSPRPAPRAGSHSPTSRRRRQAGLRATRSGLPPARSSEEHGAGHSR  299


>gi|38637562|dbj|BAD03813.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=154

 Score = 28.9 bits (63),  Expect = 5.7
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
 Frame = +1

Query  28   AAAGEKRRDE-----VQPESVELPAEVPEGALHGAVXRPAGADERAPLVGSPQQ  174
            AA GEK++ E       PE  + PAE  EG   G   R  GADER   +G  ++
Sbjct  40   AAHGEKKKKERKGRETSPEGRQWPAEKNEGG--GEDRRCRGADERRRHLGKERR  91


>gi|116055224|emb|CAL57620.1|  unnamed protein product [Ostreococcus tauri]
Length=151

 Score = 28.5 bits (62),  Expect = 7.5
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query  234  VPRTT-WTSSSLRTGTDRTLYLLRRSDERGALISTRRTXDGAVKCAFRHFR  85
            V RTT W +S ++    R ++LL R   R +   TRRT  G   C   +FR
Sbjct  85   VTRTTVWHASGVKVQKPRHVWLLHRHAVRHSRCGTRRTECGC-PCQLPYFR  134


>gi|15209176|gb|AAK91894.1|AC091627_7  Putative I-box binding factor, identical [Solanum demissum]
Length=698

 Score = 28.5 bits (62),  Expect = 7.5
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +1

Query  10   TLSHHPAAAGEKRRDEVQPESVELPAEVPEGALHGAVXRPAGADERAPLVG  162
            +LS  P+ AG  R   + P  V +PAE   G  HG   R + +    P VG
Sbjct  412  SLSLQPSVAGGSR---IYPHPVNVPAEGISGVSHGVDTRTSPSLSLQPSVG  459


>gi|115445081|ref|NP_001046320.1|  Os02g0220800 [Oryza sativa (japonica cultivar-group)]
 gi|46806493|dbj|BAD17617.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113535851|dbj|BAF08234.1|  Os02g0220800 [Oryza sativa (japonica cultivar-group)]
Length=217

 Score = 28.5 bits (62),  Expect = 7.5
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query  226  HDLDLVVLADGNR-PNVVLVAEIRREGRAHQHPPDARRRREVR  101
            H+  ++   DG R P++VL+ + R   R   HPP  RRRR  R
Sbjct  113  HEPRVIRRRDGQREPHLVLLLQPRHR-RVRPHPPRLRRRRRHR  154


>gi|21554378|gb|AAM63485.1|  cytochrome c oxidase subunit, putative [Arabidopsis thaliana]
Length=191

 Score = 28.1 bits (61),  Expect = 9.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 0/34 (0%)
 Frame = +1

Query  43   KRRDEVQPESVELPAEVPEGALHGAVXRPAGADE  144
            + + E  PES E+ +E P  A   A   PA A+E
Sbjct  66   EEKSESAPESTEVASEAPAAAQDNAEETPAAAEE  99

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.316    0.137    0.429 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 208
Number of extensions: 1
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 297
Length of database: 101054579
Length adjustment: 68
Effective length of query: 229
Effective length of database: 81786847
Effective search space: 2535392257
Effective search space used: 2535392257
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)