Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168922156-4064-115429279627.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig9 Length=486
Score E Sequences producing significant alignments: (Bits) Value gi|1174592|sp|P46259|TBA1_PEA Tubulin alpha-1 chain >gi|525332|g 181 5e-55 gi|92896308|gb|ABE93145.1| Cell division protein FtsZ [Medicago 181 5e-55 gi|17402471|emb|CAD13178.1| alpha-tubulin [Nicotiana tabacum] 181 5e-55 gi|17402467|emb|CAD13176.1| alpha-tubulin [Nicotiana tabacum] 181 5e-55 gi|1556446|gb|AAB08791.1| alpha tubulin [Hordeum vulgare] 181 5e-55 gi|77745465|gb|ABB02631.1| unknown [Solanum tuberosum] 181 5e-55 gi|15233627|ref|NP_193232.1| TUA6 [Arabidopsis thaliana] >gi|... 181 5e-55 gi|8928408|sp|Q9ZRB7|TBA_WHEAT Tubulin alpha chain >gi|409827... 181 5e-55 gi|8928422|sp|Q96460|TBA2_HORVU Tubulin alpha-2 chain >gi|161... 181 5e-55 gi|464849|sp|P33629|TBA_PRUDU Tubulin alpha chain >gi|20413|e... 181 5e-55 gi|8928432|sp|Q9ZRR5|TBA3_HORVU Tubulin alpha-3 chain >gi|416... 181 5e-55 gi|30683070|ref|NP_849388.1| TUA6 [Arabidopsis thaliana] 181 5e-55 gi|17402469|emb|CAD13177.1| alpha-tubulin [Nicotiana tabacum] 181 7e-55 gi|115484939|ref|NP_001067613.1| Os11g0247300 [Oryza sativa (... 181 7e-55 gi|110742192|dbj|BAE99023.1| tubulin alpha-2/alpha-4 chain [Arab 179 3e-54 gi|56481443|gb|AAV92352.1| alpha tubulin 1 [Pseudotsuga menzi... 179 3e-54 gi|16226462|gb|AAL16174.1|AF428406_1 AT4g14960/dl3520c [Arabidop 179 3e-54 gi|54036493|sp|Q6VAG0|TBA2_GOSHI Tubulin alpha-2 chain (Alpha... 179 3e-54 gi|54036492|sp|Q6VAF9|TBA4_GOSHI Tubulin alpha-4 chain (Alpha... 179 3e-54 gi|15220329|ref|NP_171974.1| TUA4 [Arabidopsis thaliana] >gi|... 179 3e-54 gi|76573359|gb|ABA46784.1| alpha-tubulin-like protein [Solanum t 179 3e-54 gi|1136122|emb|CAA62917.1| alfa-tubulin [Oryza sativa (japonica 179 3e-54 gi|27819095|gb|AAO23139.1| alpha tubulin [Populus tremuloides] 178 3e-54 gi|29423813|gb|AAO73546.1| alpha-tubulin [Ceratopteris richar... 178 3e-54 gi|29124983|gb|AAO63781.1| alpha-tubulin 1 [Populus tremuloides] 178 3e-54 gi|23452339|gb|AAN33000.1| alpha-tubulin 4 [Gossypium hirsutum] 178 3e-54 gi|11967906|dbj|BAB19779.1| alpha tubulin [Nicotiana tabacum] 181 4e-54 gi|51988174|emb|CAE52515.1| alpha tubulin [Setaria viridis] 178 4e-54 gi|110617748|gb|ABG78593.1| alpha-tubulin [Oryza sativa (japonic 179 6e-54 gi|135411|sp|P14641|TBA2_MAIZE Tubulin alpha-2 chain (Alpha-2... 177 6e-54 gi|3163946|emb|CAA06619.1| alpha-tubulin 1 [Eleusine indica] 177 6e-54 gi|6094429|sp|O22347|TBA1_ELEIN Tubulin alpha-1 chain (Alpha-... 177 6e-54 gi|135398|sp|P14640|TBA1_MAIZE Tubulin alpha-1 chain (Alpha-1... 177 6e-54 gi|34733239|gb|AAQ81585.1| putative tubulin alpha-2/alpha-4 chai 177 8e-54 gi|6723478|emb|CAB66336.1| alpha-tubulin [Betula pendula] 177 8e-54 gi|60476110|gb|AAX21196.1| putative alpha-tubulin [Solanum betac 177 1e-53 gi|91940067|gb|ABE66388.1| alpha-tubulin [Striga asiatica] 176 1e-53 gi|25396550|dbj|BAC24800.1| alpha tubulin [Physcomitrella patens 176 2e-53 gi|49036476|sp|Q9FT36|TBA_DAUCA Tubulin alpha chain >gi|99659... 176 2e-53 gi|93359562|gb|ABF13307.1| alpha-tubulin [Phaseolus vulgaris] 176 2e-53 gi|15029368|gb|AAK81858.1|AF394915_1 alpha tubulin subunit [Rosa 175 3e-53 gi|54036494|sp|Q6VAG1|TBA1_GOSHI Tubulin alpha-1 chain (Alpha... 175 3e-53 gi|464840|sp|P33623|TBA1_ANEPH Tubulin alpha-1 chain >gi|2964... 173 1e-52 gi|115455063|ref|NP_001051132.1| Os03g0726100 [Oryza sativa (... 174 2e-52 gi|108710848|gb|ABF98643.1| Tubulin alpha-1 chain, putative, ... 174 2e-52 gi|2625156|gb|AAB86649.1| alpha-tubulin [Chloromonas sp. ANT1] 172 3e-52 gi|8928409|sp|Q9ZRJ4|TBA_CHLVU Tubulin alpha chain >gi|416222... 172 3e-52 gi|63126536|gb|AAX63396.1| alpha-tubulin [Haematococcus pluviali 172 3e-52 gi|25264668|emb|CAD32379.1| tubulin alpha [Oryza sativa (indica 172 4e-52 gi|135394|sp|P09204|TBA1_CHLRE Tubulin alpha-1 chain >gi|1674... 171 5e-52 gi|135404|sp|P11481|TBA1_VOLCA Tubulin alpha-1/alpha-2 chain ... 171 5e-52 gi|135409|sp|P09205|TBA2_CHLRE Tubulin alpha-2 chain >gi|167450| 171 5e-52 gi|25396545|dbj|BAC24799.1| alpha tubulin [Physcomitrella patens 171 7e-52 gi|2613143|gb|AAB84298.1| tubulin [Oryza sativa] 173 9e-52 gi|1136120|emb|CAA62916.1| alpha-tubulin [Oryza sativa (japonica 171 2e-51 gi|2625154|gb|AAB86648.1| alpha-tubulin [Chloromonas sp. ANT3] 169 2e-51 gi|99082883|gb|ABC59068.2| alpha tubulin 1 [Camellia sinensis] 175 2e-51 gi|135417|sp|P22275|TBA3_MAIZE Tubulin alpha-3 chain (Alpha-3... 168 4e-51 gi|51988172|emb|CAE52514.1| alpha tubulin [Setaria viridis] 162 2e-49 gi|50428725|gb|AAT77076.1| alpha tubulin [Oryza sativa (japonica 174 3e-49 gi|115472953|ref|NP_001060075.1| Os07g0574800 [Oryza sativa (... 161 5e-49 gi|7271241|emb|CAB77671.1| alpha-tubulin [Miscanthus sinensis f. 161 7e-49 gi|15241168|ref|NP_197478.1| TUA3 [Arabidopsis thaliana] >gi|... 161 7e-49 gi|57867865|gb|AAW57312.1| alpha-tubulin [Ceratopteris richardii 160 3e-48 gi|37936218|emb|CAD26886.1| alpha-tubulin [Miscanthus sinensis] 159 3e-48 gi|37936212|emb|CAD24766.1| alpha-tubulin [Miscanthus sinensis] 159 3e-48 gi|6094431|sp|O22349|TBA3_ELEIN Tubulin alpha-3 chain (Alpha-... 159 3e-48 gi|464846|sp|P33627|TBA6_MAIZE Tubulin alpha-6 chain (Alpha-6... 159 3e-48 gi|116059394|emb|CAL55101.1| Beta tubulin (ISS) [Ostreococcus ta 158 4e-48 gi|37936210|emb|CAD24765.1| alpha-tubulin [Miscanthus sinensis] 158 4e-48 gi|37936220|emb|CAD26887.1| alpha-tubulin [Miscanthus sinensis] 158 6e-48 gi|37936214|emb|CAD24767.1| alpha-tubulin [Miscanthus floridulus 158 6e-48 gi|37936232|emb|CAD26893.1| alpha-tubulin [Miscanthus floridulus 158 6e-48 gi|49659780|gb|AAT68202.1| alpha 1 tubulin [Cynodon dactylon] 160 6e-48 gi|82400128|gb|ABB72803.1| alpha-tubulin-like protein [Solanum t 157 7e-48 gi|83283967|gb|ABC01891.1| tubulin alpha-5 chain-like protein [S 157 7e-48 gi|37936228|emb|CAD26891.1| alpha-tubulin [Miscanthus floridulus 157 1e-47 gi|8928404|sp|Q38771|TBA_AVESA Tubulin alpha chain >gi|127920... 158 1e-47 gi|8928419|sp|Q43473|TBA1_HORVU Tubulin alpha-1 chain >gi|147... 156 2e-47 gi|7271243|emb|CAB77672.1| alpha-tubulin [Miscanthus transmorris 156 2e-47 gi|62546341|gb|AAX86047.1| tubulin A [Glycine max] 156 2e-47 gi|37936216|emb|CAD24768.1| alpha-tubulin [Miscanthus floridulus 156 2e-47 gi|37936226|emb|CAD26890.1| alpha-tubulin [Miscanthus sinensis v 155 3e-47 gi|401161|sp|Q02245|TBA5_MAIZE Tubulin alpha-5 chain (Alpha-5... 155 3e-47 gi|77999295|gb|ABB16994.1| unknown [Solanum tuberosum] 155 5e-47 gi|37936230|emb|CAD26892.1| alpha-tubulin [Miscanthus floridulus 156 8e-47 gi|37936224|emb|CAD26889.1| alpha-tubulin [Miscanthus transmorri 153 1e-46 gi|54399194|gb|AAV33983.1| alpha tubulin [Pinus taeda] >gi|54... 179 1e-46 gi|15217737|ref|NP_176654.1| TUA1 (ALPHA-1 TUBULIN) [Arabidop... 155 7e-46 gi|226261|prf||1503274A alpha1 tubulin 155 7e-46 gi|37936222|emb|CAD26888.1| alpha-tubulin [Miscanthus transmorri 151 7e-46 gi|6094430|sp|O22348|TBA2_ELEIN Tubulin alpha-2 chain (Alpha-... 154 1e-44 gi|116060752|emb|CAL57230.1| Beta tubulin (ISS) [Ostreococcus ta 147 2e-44 gi|115451599|ref|NP_001049400.1| Os03g0219300 [Oryza sativa (... 150 3e-44 gi|13959103|gb|AAK51091.1| alpha tubulin [Coffea arabica] 176 3e-44 gi|76257853|gb|ABA41244.1| alpha-tubulin [Mesostigma viride] 144 1e-43 gi|76257855|gb|ABA41245.1| alpha-tubulin [Mesostigma viride] 144 1e-43 gi|76257847|gb|ABA41241.1| alpha-tubulin [Coleochaete scutata] 139 1e-42 gi|76257851|gb|ABA41243.1| alpha-tubulin [Mantoniella squamata] 138 4e-42 gi|76257849|gb|ABA41242.1| alpha-tubulin [Mantoniella squamata] 138 4e-42
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 276 Number of extensions: 8 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 486 Length of database: 101054579 Length adjustment: 104 Effective length of query: 382 Effective length of database: 71586283 Effective search space: 4152004414 Effective search space used: 4152004414 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 63 (28.9 bits)