RID=1168926414-27516-164373651434.BLASTQ1, Contig17

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168926414-27516-164373651434.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig17
Length=499

Distribution of 24 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|92888438|gb|ABE89414.1|  Ribosomal protein L6E; Ribosomal p...   187    2e-47
gi|21593910|gb|AAM65875.1|  60S ribosomal protein L6, putative [A   185    8e-47 
gi|15221798|ref|NP_173289.1|  structural constituent of riboso...   184    2e-46 
gi|464621|sp|P34091|RL6_MESCR  60S ribosomal protein L6 (YL16-...   184    2e-46
gi|15221126|ref|NP_177545.1|  structural constituent of riboso...   182    4e-46 
gi|15221127|ref|NP_177546.1|  structural constituent of riboso...   181    9e-46 
gi|7208784|emb|CAB76914.1|  60S ribosomal protein L6 [Cicer ariet   173    3e-43
gi|116310429|emb|CAH67436.1|  H0305E08.7 [Oryza sativa (indica cu   152    8e-37
gi|115458930|ref|NP_001053065.1|  Os04g0473400 [Oryza sativa (...   152    8e-37 
gi|38344818|emb|CAE02874.2|  OSJNBb0022F23.11 [Oryza sativa (japo   152    8e-37 
gi|115447017|ref|NP_001047288.1|  Os02g0591700 [Oryza sativa (...   146    4e-35 
gi|57471700|gb|AAW50981.1|  ribosomal protein L6 [Triticum aestiv   141    1e-33 
gi|57999636|dbj|BAD88438.1|  60S ribosomal protein L6 CgRPL6 [Cha   107    2e-23
gi|89475532|gb|ABD73298.1|  unknown [Panax ginseng]                55.5    1e-07
gi|92885168|gb|ABE87688.1|  Ribosomal protein L6E [Medicago trunc  39.7    0.006
gi|116057572|emb|CAL53775.1|  60S ribosomal protein L27 (ISS) [Os  32.0    1.2  
gi|445615|prf||1909362A  ribosomal protein L27                     30.8    2.6  
gi|115457006|ref|NP_001052103.1|  Os04g0137100 [Oryza sativa (...  29.6    5.8   
gi|15225207|ref|NP_180781.1|  structural constituent of riboso...  29.6    5.8   
gi|115477833|ref|NP_001062512.1|  Os08g0561500 [Oryza sativa (...  28.9    9.8   
gi|38565426|gb|AAR24051.1|  NADH dehydrogenase subunit 1 [Leucobr  28.9    9.8  
gi|38565438|gb|AAR24057.1|  NADH dehydrogenase subunit 1 [Brachyt  28.9    9.8  
gi|38565434|gb|AAR24055.1|  NADH dehydrogenase subunit 1 [Anomodo  28.9    9.8  
gi|15218697|ref|NP_171804.1|  binding [Arabidopsis thaliana] >...  28.9    9.8

Alignments

 

>gi|92888438|gb|ABE89414.1|  Ribosomal protein L6E; Ribosomal protein L6, N-terminal [Medicago 
truncatula]
Length=233

 Score =  187 bits (475),  Expect = 2e-47
 Identities = 109/136 (80%), Positives = 115/136 (84%), Gaps = 1/136 (0%)
 Frame = +3

Query  93   MAAK-KASLTSRNPELIRGIRKYSRSKMYHKRGIWAIKAKHGGVFPRHepkeappkpaek  269
            MA K + +  SRNPELIRGI KYSRS MYHKRG+WAIKAKHGG FPRH+P   P  P EK
Sbjct  1    MAPKTRTARVSRNPELIRGIGKYSRSAMYHKRGLWAIKAKHGGAFPRHDPVAKPAAPVEK  60

Query  270  ppkyypaDDVKNPIPNHRKHKPTKLRPSITPGTVLILLAGRFMGKRVVFLKQLPSGLLLV  449
            PPK+YPADDVK P+ N  K KPTKLR SITPGTVLILLAGRF GKRVVFLKQLPSGLLLV
Sbjct  61   PPKFYPADDVKKPLRNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLV  120

Query  450  TGPFKINGVPLRRVNQ  497
            TGPFKINGVPLRRVNQ
Sbjct  121  TGPFKINGVPLRRVNQ  136


>gi|21593910|gb|AAM65875.1|  60S ribosomal protein L6, putative [Arabidopsis thaliana]
Length=233

 Score =  185 bits (469),  Expect = 8e-47
 Identities = 100/134 (74%), Positives = 114/134 (85%), Gaps = 0/134 (0%)
 Frame = +3

Query  96   AAKKASLTSRNPELIRGIRKYSRSKMYHKRGIWAIKAKHGGVFPRHepkeappkpaekpp  275
            AAK+    +RNP+LIRG+ KYSRS+MYHKRG+WAIKAK+GGVFPRH+ +     P EKP 
Sbjct  3    AAKRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPA  62

Query  276  kyypaDDVKNPIPNHRKHKPTKLRPSITPGTVLILLAGRFMGKRVVFLKQLPSGLLLVTG  455
            K+YPA+DVK P+ N RK KPTKL+ S TPGTVLI+LAGRF GKRVVFLKQLPSGLLLVTG
Sbjct  63   KFYPAEDVKKPLVNRRKPKPTKLKASTTPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG  122

Query  456  PFKINGVPLRRVNQ  497
            PFKINGVPLRRVNQ
Sbjct  123  PFKINGVPLRRVNQ  136


>gi|15221798|ref|NP_173289.1|  structural constituent of ribosome [Arabidopsis thaliana]
 gi|75173375|sp|Q9FZ76|RL61_ARATH  60S ribosomal protein L6-1
 gi|9795602|gb|AAF98420.1|AC026238_12  Putative  60S ribosomal protein L6 [Arabidopsis thaliana]
 gi|15451190|gb|AAK96866.1|  Putative 60S ribosomal protein L6 [Arabidopsis thaliana]
 gi|18377490|gb|AAL66911.1|  putative 60S ribosomal protein L6 [Arabidopsis thaliana]
Length=233

 Score =  184 bits (466),  Expect = 2e-46
 Identities = 100/134 (74%), Positives = 114/134 (85%), Gaps = 0/134 (0%)
 Frame = +3

Query  96   AAKKASLTSRNPELIRGIRKYSRSKMYHKRGIWAIKAKHGGVFPRHepkeappkpaekpp  275
            AAK+    +RNP+LIRG+ KYSRS+MYHKRG+WAIKAK+GGVFPRH+ +     P EKP 
Sbjct  3    AAKRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPA  62

Query  276  kyypaDDVKNPIPNHRKHKPTKLRPSITPGTVLILLAGRFMGKRVVFLKQLPSGLLLVTG  455
            K+YPA+DVK P+ N RK KPTKL+ SITPGTVLI+LAGRF GKRVVFLKQL SGLLLVTG
Sbjct  63   KFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTG  122

Query  456  PFKINGVPLRRVNQ  497
            PFKINGVPLRRVNQ
Sbjct  123  PFKINGVPLRRVNQ  136


>gi|464621|sp|P34091|RL6_MESCR  60S ribosomal protein L6 (YL16-like)
 gi|19539|emb|CAA49175.1|  ribosomal protein YL16 [Mesembryanthemum crystallinum]
Length=234

 Score =  184 bits (466),  Expect = 2e-46
 Identities = 105/134 (78%), Positives = 115/134 (85%), Gaps = 0/134 (0%)
 Frame = +3

Query  96   AAKKASLTSRNPELIRGIRKYSRSKMYHKRGIWAIKAKHGGVFPRHepkeappkpaekpp  275
            A ++    SRNPEL+RGI KYSRSKMYHKRG+WAIKAK+GGVFP+H PK A  K  EKPP
Sbjct  4    AKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPP  63

Query  276  kyypaDDVKNPIPNHRKHKPTKLRPSITPGTVLILLAGRFMGKRVVFLKQLPSGLLLVTG  455
            K+YPADDVK P+ N RK KPTKLR SITPGTVLI+LAGRF GKRVVFLKQL SGLLLVTG
Sbjct  64   KFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTG  123

Query  456  PFKINGVPLRRVNQ  497
            PFK+NGVPLRRVNQ
Sbjct  124  PFKVNGVPLRRVNQ  137


>gi|15221126|ref|NP_177545.1|  structural constituent of ribosome [Arabidopsis thaliana]
 gi|75169681|sp|Q9C9C5|RL63_ARATH  60S ribosomal protein L6-3
 gi|12325151|gb|AAG52527.1|AC016662_21  putative 60S ribosomal protein L6; 24498-25922 [Arabidopsis thaliana]
 gi|15450986|gb|AAK96764.1|  putative 60S ribosomal protein L6 [Arabidopsis thaliana]
 gi|19698917|gb|AAL91194.1|  putative 60S ribosomal protein L6 [Arabidopsis thaliana]
 gi|21387113|gb|AAM47960.1|  putative 60S ribosomal protein L6 [Arabidopsis thaliana]
 gi|21592925|gb|AAM64875.1|  putative 60S ribosomal protein L6 [Arabidopsis thaliana]
Length=233

 Score =  182 bits (463),  Expect = 4e-46
 Identities = 101/134 (75%), Positives = 114/134 (85%), Gaps = 0/134 (0%)
 Frame = +3

Query  96   AAKKASLTSRNPELIRGIRKYSRSKMYHKRGIWAIKAKHGGVFPRHepkeappkpaekpp  275
            A ++    +RNP+LIRG+ KYSRS+MYHKRG+WAIKAK+GGVFPRH+ K     P EKPP
Sbjct  3    AKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPP  62

Query  276  kyypaDDVKNPIPNHRKHKPTKLRPSITPGTVLILLAGRFMGKRVVFLKQLPSGLLLVTG  455
            K+YPA+DVK P+PN R  KPTKLR SITPGTVLI+LAGRF GKRVVFLKQL SGLLLVTG
Sbjct  63   KFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTG  122

Query  456  PFKINGVPLRRVNQ  497
            PFKINGVPLRRVNQ
Sbjct  123  PFKINGVPLRRVNQ  136


>gi|15221127|ref|NP_177546.1|  structural constituent of ribosome [Arabidopsis thaliana]
 gi|75169682|sp|Q9C9C6|RL62_ARATH  60S ribosomal protein L6-2
 gi|12325148|gb|AAG52524.1|AC016662_18  putative 60S ribosomal protein L6; 21879-23145 [Arabidopsis thaliana]
 gi|17065092|gb|AAL32700.1|  putative 60S ribosomal protein L6 [Arabidopsis thaliana]
 gi|27311965|gb|AAO00948.1|  putative 60S ribosomal protein L6 [Arabidopsis thaliana]
Length=233

 Score =  181 bits (460),  Expect = 9e-46
 Identities = 100/134 (74%), Positives = 114/134 (85%), Gaps = 0/134 (0%)
 Frame = +3

Query  96   AAKKASLTSRNPELIRGIRKYSRSKMYHKRGIWAIKAKHGGVFPRHepkeappkpaekpp  275
            A ++ +  +RNP+LIRG+ KYSRS+MYHKRG+WAIKAK+GGVFPRH+ K     P EKPP
Sbjct  3    AKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPP  62

Query  276  kyypaDDVKNPIPNHRKHKPTKLRPSITPGTVLILLAGRFMGKRVVFLKQLPSGLLLVTG  455
            K+YPA+DVK P+PN R  KP KLR SITPGTVLI+LAGRF GKRVVFLKQL SGLLLVTG
Sbjct  63   KFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTG  122

Query  456  PFKINGVPLRRVNQ  497
            PFKINGVPLRRVNQ
Sbjct  123  PFKINGVPLRRVNQ  136


>gi|7208784|emb|CAB76914.1|  60S ribosomal protein L6 [Cicer arietinum]
Length=233

 Score =  173 bits (438),  Expect = 3e-43
 Identities = 98/132 (74%), Positives = 111/132 (84%), Gaps = 0/132 (0%)
 Frame = +3

Query  102  KKASLTSRNPELIRGIRKYSRSKMYHKRGIWAIKAKHGGVFPRHepkeappkpaekppky  281
            ++ +  SRNP+LIRGI KYS+S MYHKRG+WAIKAKHGG FP+H+PK  P  PAEK PK+
Sbjct  5    QRTARVSRNPDLIRGIGKYSKSAMYHKRGLWAIKAKHGGAFPKHDPKPKPEAPAEKAPKF  64

Query  282  ypaDDVKNPIPNHRKHKPTKLRPSITPGTVLILLAGRFMGKRVVFLKQLPSGLLLVTGPF  461
            YPA DV+ P+ N  K KPTKLR +ITPGTVLILLAGRF GKRVVFLKQLPSGLL  +GPF
Sbjct  65   YPAHDVQKPLRNKHKPKPTKLRANITPGTVLILLAGRFKGKRVVFLKQLPSGLLTCSGPF  124

Query  462  KINGVPLRRVNQ  497
            KINGVPLRRVNQ
Sbjct  125  KINGVPLRRVNQ  136


>gi|116310429|emb|CAH67436.1|  H0305E08.7 [Oryza sativa (indica cultivar-group)]
Length=222

 Score =  152 bits (383),  Expect = 8e-37
 Identities = 87/122 (71%), Positives = 98/122 (80%), Gaps = 2/122 (1%)
 Frame = +3

Query  132  ELIRGIRKYSRSKMYHKRGIWAIKAKHGGVFPRHepkeappkpaekppkyypaDDVKNPI  311
            +L +GI+K SRS  YH+RG+WAIKAKHGG FP+   ++     A   PK+YPADDVK   
Sbjct  6    KLSQGIKKASRSHTYHRRGLWAIKAKHGGAFPK--AEKPAAAAAASAPKFYPADDVKPRQ  63

Query  312  PNHRKHKPTKLRPSITPGTVLILLAGRFMGKRVVFLKQLPSGLLLVTGPFKINGVPLRRV  491
            P+ RK  PTKLR SITPGTVLILLAGRFMGKRVVFLKQL SGLLLVTGPFKINGVP+RRV
Sbjct  64   PSTRKPNPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVTGPFKINGVPIRRV  123

Query  492  NQ  497
            NQ
Sbjct  124  NQ  125


>gi|115458930|ref|NP_001053065.1|  Os04g0473400 [Oryza sativa (japonica cultivar-group)]
 gi|113564636|dbj|BAF14979.1|  Os04g0473400 [Oryza sativa (japonica cultivar-group)]
Length=239

 Score =  152 bits (383),  Expect = 8e-37
 Identities = 87/122 (71%), Positives = 98/122 (80%), Gaps = 2/122 (1%)
 Frame = +3

Query  132  ELIRGIRKYSRSKMYHKRGIWAIKAKHGGVFPRHepkeappkpaekppkyypaDDVKNPI  311
            +L +GI+K SRS  YH+RG+WAIKAKHGG FP+   ++     A   PK+YPADDVK   
Sbjct  23   KLSQGIKKASRSHTYHRRGLWAIKAKHGGAFPK--AEKPAAAAAAAAPKFYPADDVKPRQ  80

Query  312  PNHRKHKPTKLRPSITPGTVLILLAGRFMGKRVVFLKQLPSGLLLVTGPFKINGVPLRRV  491
            P+ RK  PTKLR SITPGTVLILLAGRFMGKRVVFLKQL SGLLLVTGPFKINGVP+RRV
Sbjct  81   PSTRKPNPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVTGPFKINGVPIRRV  140

Query  492  NQ  497
            NQ
Sbjct  141  NQ  142


>gi|38344818|emb|CAE02874.2|  OSJNBb0022F23.11 [Oryza sativa (japonica cultivar-group)]
Length=222

 Score =  152 bits (383),  Expect = 8e-37
 Identities = 87/122 (71%), Positives = 98/122 (80%), Gaps = 2/122 (1%)
 Frame = +3

Query  132  ELIRGIRKYSRSKMYHKRGIWAIKAKHGGVFPRHepkeappkpaekppkyypaDDVKNPI  311
            +L +GI+K SRS  YH+RG+WAIKAKHGG FP+   ++     A   PK+YPADDVK   
Sbjct  6    KLSQGIKKASRSHTYHRRGLWAIKAKHGGAFPK--AEKPAAAAAAAAPKFYPADDVKPRQ  63

Query  312  PNHRKHKPTKLRPSITPGTVLILLAGRFMGKRVVFLKQLPSGLLLVTGPFKINGVPLRRV  491
            P+ RK  PTKLR SITPGTVLILLAGRFMGKRVVFLKQL SGLLLVTGPFKINGVP+RRV
Sbjct  64   PSTRKPNPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVTGPFKINGVPIRRV  123

Query  492  NQ  497
            NQ
Sbjct  124  NQ  125


>gi|115447017|ref|NP_001047288.1|  Os02g0591700 [Oryza sativa (japonica cultivar-group)]
 gi|46805164|dbj|BAD17436.1|  putative 60S ribosomal protein L6 (RPL6C) [Oryza sativa (japonica 
cultivar-group)]
 gi|50726469|dbj|BAD34078.1|  putative 60S ribosomal protein L6 (RPL6C) [Oryza sativa (japonica 
cultivar-group)]
 gi|113536819|dbj|BAF09202.1|  Os02g0591700 [Oryza sativa (japonica cultivar-group)]
Length=219

 Score =  146 bits (368),  Expect = 4e-35
 Identities = 83/122 (68%), Positives = 97/122 (79%), Gaps = 5/122 (4%)
 Frame = +3

Query  132  ELIRGIRKYSRSKMYHKRGIWAIKAKHGGVFPRHepkeappkpaekppkyypaDDVKNPI  311
            +L +GI++ SRS  YH+RG+WAIKAK+GG FP+     A    A   PK+YPADDVK   
Sbjct  6    KLSQGIKRASRSHTYHRRGLWAIKAKNGGTFPK-----AGKPAAAAEPKFYPADDVKPRA  60

Query  312  PNHRKHKPTKLRPSITPGTVLILLAGRFMGKRVVFLKQLPSGLLLVTGPFKINGVPLRRV  491
            P+ RK  PTKLR +ITPGTVLILLAGR+MGKRVVFLKQL SGLLL+TGPFKINGVP+RRV
Sbjct  61   PSTRKANPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRV  120

Query  492  NQ  497
            NQ
Sbjct  121  NQ  122


>gi|57471700|gb|AAW50981.1|  ribosomal protein L6 [Triticum aestivum]
Length=219

 Score =  141 bits (355),  Expect = 1e-33
 Identities = 81/118 (68%), Positives = 92/118 (77%), Gaps = 5/118 (4%)
 Frame = +3

Query  144  GIRKYSRSKMYHKRGIWAIKAKHGGVFPRHepkeappkpaekppkyypaDDVKNPIPNHR  323
            GI++ SRS  YH+RG+WAIKAKHGG  P+     A    A   PK+YPADDVK    + R
Sbjct  10   GIKRASRSHTYHRRGLWAIKAKHGGALPK-----AEKPAAIAEPKFYPADDVKPRTVSTR  64

Query  324  KHKPTKLRPSITPGTVLILLAGRFMGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQ  497
            K  PTKLR +ITPGTVLILLAGR+MGKRVVFLKQL SGLLL+TGPFKINGVP+RRVNQ
Sbjct  65   KPHPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLQSGLLLITGPFKINGVPIRRVNQ  122


>gi|57999636|dbj|BAD88438.1|  60S ribosomal protein L6 CgRPL6 [Chara globularis]
Length=191

 Score =  107 bits (268),  Expect = 2e-23
 Identities = 58/72 (80%), Positives = 60/72 (83%), Gaps = 5/72 (6%)
 Frame = +3

Query  291  DDVKNPIPNHRK---HKPTKLRPSITPGTVLILLAGRFMGKRVVFLKQLPSGLLLVTGPF  461
            DDV  P P H+K    KPTKLR SITPGTVLILL GRF GKRVVFLKQL SGLLLVTGPF
Sbjct  27   DDV--PKPRHKKTAAKKPTKLRASITPGTVLILLVGRFKGKRVVFLKQLESGLLLVTGPF  84

Query  462  KINGVPLRRVNQ  497
            K+NGVPLRRVNQ
Sbjct  85   KVNGVPLRRVNQ  96


>gi|89475532|gb|ABD73298.1|  unknown [Panax ginseng]
Length=92

 Score = 55.5 bits (132),  Expect = 1e-07
 Identities = 25/42 (59%), Positives = 30/42 (71%), Gaps = 0/42 (0%)
 Frame = +3

Query  99   AKKASLTSRNPELIRGIRKYSRSKMYHKRGIWAIKAKHGGVF  224
            A K +  SRNP+LIRGI KYSRS  YHKRG+WAI+ +    F
Sbjct  2    APKTAKKSRNPDLIRGIGKYSRSATYHKRGLWAIRLRTAAYF  43


>gi|92885168|gb|ABE87688.1|  Ribosomal protein L6E [Medicago truncatula]
Length=132

 Score = 39.7 bits (91),  Expect = 0.006
 Identities = 17/20 (85%), Positives = 19/20 (95%), Gaps = 0/20 (0%)
 Frame = +3

Query  438  LLLVTGPFKINGVPLRRVNQ  497
            LL ++GPFKINGVPLRRVNQ
Sbjct  16   LLCISGPFKINGVPLRRVNQ  35


>gi|116057572|emb|CAL53775.1|  60S ribosomal protein L27 (ISS) [Ostreococcus tauri]
Length=184

 Score = 32.0 bits (71),  Expect = 1.2
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 0/26 (0%)
 Frame = +3

Query  360  PGTVLILLAGRFMGKRVVFLKQLPSG  437
            PG V+++LAGR+ GK+ V +K +  G
Sbjct  25   PGKVVVVLAGRYAGKKAVIVKNVDDG  50


>gi|445615|prf||1909362A  ribosomal protein L27
Length=136

 Score = 30.8 bits (68),  Expect = 2.6
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 0/26 (0%)
 Frame = +3

Query  360  PGTVLILLAGRFMGKRVVFLKQLPSG  437
            PG V+++LAGR+ G++ V +K +  G
Sbjct  7    PGKVVLVLAGRYSGRKAVIVKNIDDG  32


>gi|115457006|ref|NP_001052103.1|  Os04g0137100 [Oryza sativa (japonica cultivar-group)]
 gi|113563674|dbj|BAF14017.1|  Os04g0137100 [Oryza sativa (japonica cultivar-group)]
Length=492

 Score = 29.6 bits (65),  Expect = 5.8
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 0/25 (0%)
 Frame = -3

Query  422  LQEDDSLPHEPPGEKDEHRPWRNAR  348
            LQED   P  PP    EH  W+ AR
Sbjct  464  LQEDSPFPQPPPAPNCEHCQWQQAR  488


>gi|15225207|ref|NP_180781.1|  structural constituent of ribosome [Arabidopsis thaliana]
 gi|75313545|sp|Q9SKX8|RL271_ARATH  60S ribosomal protein L27-1
 gi|4263697|gb|AAD15383.1|  60S ribosomal protein L27 [Arabidopsis thaliana]
 gi|62867611|gb|AAY17409.1|  At2g32220 [Arabidopsis thaliana]
Length=135

 Score = 29.6 bits (65),  Expect = 5.8
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 0/26 (0%)
 Frame = +3

Query  360  PGTVLILLAGRFMGKRVVFLKQLPSG  437
            PG  +ILL GR+ GK+ V +K    G
Sbjct  7    PGKAVILLQGRYTGKKAVIVKSFDDG  32


>gi|115477833|ref|NP_001062512.1|  Os08g0561500 [Oryza sativa (japonica cultivar-group)]
 gi|113624481|dbj|BAF24426.1|  Os08g0561500 [Oryza sativa (japonica cultivar-group)]
Length=421

 Score = 28.9 bits (63),  Expect = 9.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 0/40 (0%)
 Frame = +3

Query  300  KNPIPNHRKHKPTKLRPSITPGTVLILLAGRFMGKRVVFL  419
            + P+P+HR+ +   LR    P   L+LL  R +  R V L
Sbjct  358  RRPLPDHRRRQAVLLRHPAPPAAYLLLLRQRRLTDRSVSL  397


>gi|38565426|gb|AAR24051.1|  NADH dehydrogenase subunit 1 [Leucobryum albidum]
Length=226

 Score = 28.9 bits (63),  Expect = 9.8
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 0/39 (0%)
 Frame = -1

Query  427  SCFKKTTRFPMNLPARRMSTVPGVMLGLSLVGLCLRWLG  311
            SC  +T R P +LP     +V G  +  S +G  L +LG
Sbjct  138  SCLAETNRAPFDLPEAEAESVAGYNVEYSSMGFALFFLG  176


>gi|38565438|gb|AAR24057.1|  NADH dehydrogenase subunit 1 [Brachythecium rutabulum]
Length=251

 Score = 28.9 bits (63),  Expect = 9.8
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 0/39 (0%)
 Frame = -1

Query  427  SCFKKTTRFPMNLPARRMSTVPGVMLGLSLVGLCLRWLG  311
            SC  +T R P +LP     +V G  +  S +G  L +LG
Sbjct  161  SCLAETNRAPFDLPEAEAESVAGYNVEYSSMGFALFFLG  199


>gi|38565434|gb|AAR24055.1|  NADH dehydrogenase subunit 1 [Anomodon viticulosus]
Length=251

 Score = 28.9 bits (63),  Expect = 9.8
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 0/39 (0%)
 Frame = -1

Query  427  SCFKKTTRFPMNLPARRMSTVPGVMLGLSLVGLCLRWLG  311
            SC  +T R P +LP     +V G  +  S +G  L +LG
Sbjct  161  SCLAETNRAPFDLPEAEAESVAGYNVEYSSMGFALFFLG  199


>gi|15218697|ref|NP_171804.1|  binding [Arabidopsis thaliana]
 gi|46396022|sp|Q9SA65|CAP4_ARATH  Putative clathrin assembly protein At1g03050
 gi|4587573|gb|AAD25804.1|AC006550_12  Similar to clathrin assembly protein gb|AF041374 (CALM) from 
Rattus norvegicus. [Arabidopsis thaliana]
 gi|91805731|gb|ABE65594.1|  clathrin assembly protein-like [Arabidopsis thaliana]
Length=599

 Score = 28.9 bits (63),  Expect = 9.8
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = -3

Query  497  LIHTTQRNSIYLEGPSNKEQS*RQLLQEDD-------SLPHEPPGEKDEHRPWRNARPE  342
            L HT Q  S+  E   + +++  + + E+        +LP  PP E+D+ +P   A+ E
Sbjct  328  LEHTKQSKSVKSEADEDDDEARTEEVNEEQEDMNAIKALPEPPPKEEDDVKPEEEAKEE  386

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 218
Number of extensions: 2
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 499
Length of database: 101054579
Length adjustment: 105
Effective length of query: 394
Effective length of database: 71302934
Effective search space: 4349478974
Effective search space used: 4349478974
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 63 (28.9 bits)