Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168923527-7490-74098432489.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig3 Length=598
Score E Sequences producing significant alignments: (Bits) Value gi|6094014|sp|O82528|RL15_PETHY 60S ribosomal protein L15 >gi... 232 7e-61 gi|115454023|ref|NP_001050612.1| Os03g0598800 [Oryza sativa (... 230 3e-60 gi|15236049|ref|NP_193470.1| structural constituent of riboso... 226 5e-59 gi|48596903|dbj|BAD22764.1| ribosomal protein [Bromus inermis] 226 5e-59 gi|15235851|ref|NP_193405.1| structural constituent of riboso... 226 5e-59 gi|89257650|gb|ABD65137.1| 60S ribosomal protein L15 [Brassica o 225 8e-59 gi|6093872|sp|O65082|RL15B_PICMA 60S ribosomal protein L15-2 ... 225 8e-59 gi|6093871|sp|O65050|RL15A_PICMA 60S ribosomal protein L15-1 ... 224 2e-58 gi|2245098|emb|CAB10520.1| ribosomal protein [Arabidopsis tha... 222 9e-58 gi|92886942|gb|ABE88548.1| Ribosomal protein L15e [Medicago trun 217 3e-56 gi|115462945|ref|NP_001055072.1| Os05g0274900 [Oryza sativa (... 194 2e-49 gi|50878349|gb|AAT85124.1| putative 60s ribosomal protein L15... 194 2e-49 gi|7677382|gb|AAF67144.1|AF230646_1 large subunit ribosomal prot 177 2e-44 gi|116061838|emb|CAL52556.1| 60s ribosomal protein L15 (ISS) [Os 174 2e-43 gi|82621122|gb|ABB86249.1| 60S ribosomal protein L15-like [Solan 130 3e-30 gi|6094016|sp|O82712|RL15_QUESU 60S ribosomal protein L15 >gi... 121 2e-27 gi|54290617|dbj|BAD62188.1| putative ribosomal protein L15 [O... 117 3e-26 gi|50910894|gb|AAT88062.1| putative 60S ribosomal protein L15 [T 95.9 1e-19 gi|2996166|gb|AAC32174.1| putative 60S ribosomal protein L15 ... 95.5 1e-19 gi|2996172|gb|AAC32177.1| putative 60S ribosomal protein L15 [Pi 95.5 1e-19 gi|6049128|gb|AAF02467.1|AF127450_1 putative 60S ribosomal prote 95.5 1e-19 gi|50910870|gb|AAT88050.1| putative 60S ribosomal protein L15 [P 95.5 1e-19 gi|50910880|gb|AAT88055.1| putative 60S ribosomal protein L15 [P 95.5 1e-19 gi|50910890|gb|AAT88060.1| putative 60S ribosomal protein L15 [P 95.5 1e-19 gi|6049126|gb|AAF02466.1|AF127449_1 putative 60S ribosomal pr... 95.5 1e-19 gi|2996136|gb|AAC32160.1| putative 60S ribosomal protein L15 ... 95.1 2e-19 gi|50910892|gb|AAT88061.1| putative 60S ribosomal protein L15 [A 95.1 2e-19 gi|1620984|emb|CAA70083.1| 60S ribosomal protein L15 [Nicotiana 95.1 2e-19 gi|32400778|gb|AAP80621.1|AF475099_1 60S ribosomal protein L15 [ 90.9 3e-18 gi|115467750|ref|NP_001057474.1| Os06g0308200 [Oryza sativa (... 85.1 2e-16 gi|1172963|sp|P46289|RL15_BRANA 60S ribosomal protein L15 (RL... 75.9 1e-13 gi|2245097|emb|CAB10519.1| hypothetical protein [Arabidopsis ... 38.5 0.019 gi|108709808|gb|ABF97603.1| hypothetical protein LOC_Os03g416... 31.6 2.3 gi|115473787|ref|NP_001060492.1| Os07g0654400 [Oryza sativa (... 30.0 6.6 gi|51705411|gb|AAU09443.1| UDP-glucose glucosyltransferase [Frag 30.0 6.6 gi|28628183|gb|AAN85566.1| UDP-glucosyl transferase [Fragaria x 30.0 6.6 gi|15238124|ref|NP_199564.1| dopamine beta-monooxygenase [Ara... 30.0 6.6
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 320 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 598 Length of database: 101054579 Length adjustment: 107 Effective length of query: 491 Effective length of database: 70736236 Effective search space: 6507733712 Effective search space used: 6507733712 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 65 (29.6 bits)