Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168927176-25677-108780589601.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig35 Length=482
Score E Sequences producing significant alignments: (Bits) Value gi|92896930|gb|ABE93442.1| SKP1 component [Medicago truncatul... 165 6e-41 gi|4959710|gb|AAD34458.1| Skp1 [Medicago sativa] 165 6e-41 gi|92896927|gb|ABE93439.1| SKP1 component [Medicago truncatul... 164 2e-40 gi|18958257|dbj|BAB85607.1| kinetochore protein [Brassica juncea 159 6e-39 gi|18958259|dbj|BAB85608.1| kinetochore protein [Brassica juncea 158 1e-38 gi|18958253|dbj|BAB85605.1| kinetochore protein [Brassica juncea 158 1e-38 gi|84579467|dbj|BAE72121.1| SKP1-like protein [Silene latifolia] 157 1e-38 gi|2673870|emb|CAA75118.1| fimbriata-associated protein [Antirrh 157 2e-38 gi|18410982|ref|NP_565123.1| SKP1 (ARABIDOPSIS SKP1 HOMOLOGUE... 157 2e-38 gi|2673868|emb|CAA75117.1| fimbriata-associated protein [Antirrh 156 3e-38 gi|18958255|dbj|BAB85606.1| kinetochore protein [Brassica juncea 156 4e-38 gi|62467589|gb|AAX83944.1| Skp1 [Capsicum annuum] 155 6e-38 gi|84579463|dbj|BAE72119.1| SKP1-like protein [Silene latifolia] 155 6e-38 gi|82470781|gb|ABB77427.1| Skp1-like protein 2 [Petunia inflata] 155 8e-38 gi|3719211|gb|AAC63110.1| UIP2 [Arabidopsis thaliana] 155 8e-38 gi|18422184|ref|NP_568603.1| ASK2 (ARABIDOPSIS SKP1-LIKE 2); ... 155 8e-38 gi|40644754|emb|CAE53885.1| putative SKP1 protein [Triticum aest 153 2e-37 gi|51292007|gb|AAT99735.1| SKP1 [Nicotiana tabacum] 152 4e-37 gi|47054182|gb|AAT09201.1| skp1 protein [Oryza sativa (japonica 152 4e-37 gi|77550711|gb|ABA93508.1| SKP1-like protein 1B, putative, ex... 152 4e-37 gi|18958249|dbj|BAB85603.1| kinetochore protein [Brassica juncea 152 5e-37 gi|47176688|gb|AAT12490.1| Skp1/Ask1-like protein [Zantedeschia 151 9e-37 gi|81248477|gb|ABB69022.1| SKP1 [Brassica napus] 151 9e-37 gi|7378764|emb|CAB85491.1| putative kinetochore protein [Hordeum 151 1e-36 gi|82470777|gb|ABB77425.1| Skp1-like protein 3 [Petunia inflata] 150 2e-36 gi|29468341|gb|AAO85510.1| SKP1 [Nicotiana benthamiana] 150 3e-36 gi|3551838|gb|AAC63273.1| SKP1-like protein [Nicotiana cleveland 150 3e-36 gi|82470779|gb|ABB77426.1| Skp1-like protein 1 [Petunia inflata] 149 5e-36 gi|32330695|gb|AAP79890.1| SKP1/ASK1-like protein [Triticum aest 149 6e-36 gi|18958251|dbj|BAB85604.1| kinetochore protein [Brassica juncea 147 2e-35 gi|106879633|emb|CAJ38400.1| fimbriata-associated protein [Plant 143 3e-34 gi|18394828|ref|NP_564105.1| ASK4; ubiquitin-protein ligase [... 143 3e-34 gi|7573584|emb|CAB87834.1| putative kinetochore protein [Vicia f 142 6e-34 gi|52076056|dbj|BAD46569.1| putative UIP2 [Oryza sativa (japonic 140 2e-33 gi|7573582|emb|CAB87813.1| putative kinetochore protein [Hordeum 140 3e-33 gi|84579461|dbj|BAE72118.1| SKP1-like protein [Silene latifolia] 139 4e-33 gi|62642287|gb|AAX92710.1| SCF ubiquitin ligase [Picea abies] 138 1e-32 gi|106879631|emb|CAJ38399.1| fimbriata-associated protein [Plant 137 1e-32 gi|84579465|dbj|BAE72120.1| SKP1-like protein [Silene latifolia] 134 1e-31 gi|92891371|gb|ABE90796.1| Skp1 [Medicago truncatula] 133 3e-31 gi|18400912|ref|NP_565604.1| ASK3; protein binding / ubiquiti... 130 2e-30 gi|1737169|gb|AAB38862.1| homologue to SKP1 [Arabidopsis thalian 129 4e-30 gi|115480423|ref|NP_001063805.1| Os09g0539500 [Oryza sativa (... 125 9e-29 gi|116831423|gb|ABK28664.1| unknown [Arabidopsis thaliana] 124 1e-28 gi|18418399|ref|NP_567959.1| ASK11 (ARABIDOPSIS SKP1-LIKE 11)... 124 1e-28 gi|18418454|ref|NP_567967.1| ASK12; protein binding / ubiquit... 122 5e-28 gi|18411415|ref|NP_567090.1| ASK13; protein binding / ubiquit... 120 2e-27 gi|18403174|ref|NP_566695.1| ASK10; ubiquitin-protein ligase ... 119 5e-27 gi|116831226|gb|ABK28567.1| unknown [Arabidopsis thaliana] 117 1e-26 gi|7573587|emb|CAB87835.1| putative kinetochore protein [Vicia f 117 1e-26 gi|18403171|ref|NP_566694.1| ASK9 (ARABIDOPSIS SKP1-LIKE 9); ... 117 1e-26 gi|47680278|gb|AAT37114.1| skp1-like protein [Oryza sativa (japo 115 7e-26 gi|40253354|dbj|BAD05286.1| putative SKP1 [Oryza sativa (japonic 114 2e-25 gi|115476152|ref|NP_001061672.1| Os08g0375700 [Oryza sativa (... 114 2e-25 gi|23495763|dbj|BAC19974.1| putative Skp1 [Oryza sativa (japo... 112 5e-25 gi|18404608|ref|NP_566773.1| ASK15; ubiquitin-protein ligase [Ar 112 8e-25 gi|18395497|ref|NP_565296.1| ASK14; protein binding / ubiquit... 112 8e-25 gi|23495757|dbj|BAC19968.1| putative Skp1 [Oryza sativa (japo... 110 3e-24 gi|11994756|dbj|BAB03085.1| kinetechore (Skp1p-like) protein-lik 110 3e-24 gi|115478296|ref|NP_001062743.1| Os09g0273800 [Oryza sativa (... 109 5e-24 gi|115478302|ref|NP_001062746.1| Os09g0274700 [Oryza sativa (... 107 2e-23 gi|2673872|emb|CAA75119.1| fimbriata-associated protein [Antirrh 106 4e-23 gi|18395495|ref|NP_565295.1| ASK19; ubiquitin-protein ligase ... 104 1e-22 gi|115478304|ref|NP_001062747.1| Os09g0274800 [Oryza sativa (... 102 6e-22 gi|18411417|ref|NP_567091.1| ASK5; ubiquitin-protein ligase [... 100 2e-21 gi|18395500|ref|NP_565297.1| ASK16 (ARABIDOPSIS SKP1-LIKE 16)... 99.0 7e-21 gi|18403167|ref|NP_566692.1| ASK8; ubiquitin-protein ligase [... 98.6 9e-21 gi|92874690|gb|ABE82920.1| SKP1 component [Medicago truncatula] 97.1 3e-20 gi|21555166|gb|AAM63794.1| SKP1/ASK1 (At18), putative [Arabidops 96.7 4e-20 gi|9082295|gb|AAF82795.1|AF274864_1 SKP1gamma1 protein [Brassica 96.7 4e-20 gi|18391128|ref|NP_563864.1| ASK18; protein binding / ubiquit... 96.7 4e-20 gi|55978022|gb|AAV68611.1| Skp1 [Ostreococcus tauri] 95.9 6e-20 gi|49388746|dbj|BAD25946.1| putative SKP1 [Oryza sativa (japonic 95.1 1e-19 gi|115470567|ref|NP_001058882.1| Os07g0144900 [Oryza sativa (... 95.1 1e-19 gi|13434998|gb|AAK26104.1|AF132729_1 SKP1-like protein ASK10 [Ar 94.7 1e-19 gi|18403169|ref|NP_566693.1| ASK7; ubiquitin-protein ligase [... 90.9 2e-18 gi|116831295|gb|ABK28601.1| unknown [Arabidopsis thaliana] 89.0 7e-18 gi|18409761|ref|NP_566978.1| ASK6; ubiquitin-protein ligase [... 89.0 7e-18 gi|18399260|ref|NP_565467.1| MEO (MEIDOS); ubiquitin-protein ... 88.2 1e-17 gi|115473465|ref|NP_001060331.1| Os07g0625600 [Oryza sativa (... 87.8 2e-17 gi|22093770|dbj|BAC07061.1| putative Skp1(S-phase kinase-asso... 87.8 2e-17 gi|47680276|gb|AAT37113.1| skp1-like protein [Oryza sativa (japo 86.7 4e-17 gi|115466000|ref|NP_001056599.1| Os06g0113800 [Oryza sativa (... 86.7 4e-17 gi|115478294|ref|NP_001062742.1| Os09g0272900 [Oryza sativa (... 83.6 3e-16 gi|91940186|gb|ABE66403.1| fimbriata-associated protein [Striga 82.0 9e-16 gi|115443621|ref|NP_001045590.1| Os02g0101600 [Oryza sativa (... 80.5 3e-15 gi|85792311|gb|ABC84197.1| SLF-interacting SKP1-like protein ... 80.1 3e-15 gi|2759997|emb|CAA05891.1| fimbriata-associated protein [Citrus 79.0 8e-15 gi|106879637|emb|CAJ38402.1| fimbriata-associated protein [Plant 78.2 1e-14 gi|92877088|gb|ABE84308.1| SKP1 component [Medicago truncatula] 75.1 1e-13 gi|115473463|ref|NP_001060330.1| Os07g0625500 [Oryza sativa (... 74.3 2e-13 gi|115476148|ref|NP_001061670.1| Os08g0375200 [Oryza sativa (... 73.9 2e-13 gi|115473459|ref|NP_001060328.1| Os07g0624900 [Oryza sativa (... 73.2 4e-13 gi|22093771|dbj|BAC07062.1| putative Skp1(S-phase kinase-asso... 72.4 7e-13 gi|7529730|emb|CAB86910.1| kinetochore-like protein [Arabidopsis 72.0 9e-13 gi|22093764|dbj|BAC07055.1| putative Skp1(S-phase kinase-asso... 69.3 6e-12 gi|91806481|gb|ABE65968.1| Skp1 family protein [Arabidopsis thal 68.6 1e-11 gi|115478308|ref|NP_001062749.1| Os09g0275200 [Oryza sativa (... 65.1 1e-10 gi|22093766|dbj|BAC07057.1| hypothetical protein [Oryza sativa ( 62.4 7e-10 gi|115471687|ref|NP_001059442.1| Os07g0409500 [Oryza sativa (... 58.5 1e-08
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 209 Number of extensions: 1 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 482 Length of database: 101054579 Length adjustment: 104 Effective length of query: 378 Effective length of database: 71586283 Effective search space: 4008831848 Effective search space used: 4008831848 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 63 (28.9 bits)