Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168927381-11886-81288446136.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig39 Length=463
Score E Sequences producing significant alignments: (Bits) Value gi|17402469|emb|CAD13177.1| alpha-tubulin [Nicotiana tabacum] 242 5e-64 gi|17402471|emb|CAD13178.1| alpha-tubulin [Nicotiana tabacum] 241 6e-64 gi|17402467|emb|CAD13176.1| alpha-tubulin [Nicotiana tabacum] 241 6e-64 gi|77745465|gb|ABB02631.1| unknown [Solanum tuberosum] 241 6e-64 gi|30683070|ref|NP_849388.1| TUA6 [Arabidopsis thaliana] 241 6e-64 gi|15233627|ref|NP_193232.1| TUA6 [Arabidopsis thaliana] >gi|... 241 6e-64 gi|464849|sp|P33629|TBA_PRUDU Tubulin alpha chain >gi|20413|e... 241 6e-64 gi|8928432|sp|Q9ZRR5|TBA3_HORVU Tubulin alpha-3 chain >gi|416... 241 6e-64 gi|92896308|gb|ABE93145.1| Cell division protein FtsZ [Medicago 239 2e-63 gi|1556446|gb|AAB08791.1| alpha tubulin [Hordeum vulgare] 239 2e-63 gi|8928408|sp|Q9ZRB7|TBA_WHEAT Tubulin alpha chain >gi|409827... 239 2e-63 gi|8928422|sp|Q96460|TBA2_HORVU Tubulin alpha-2 chain >gi|161... 239 2e-63 gi|1174592|sp|P46259|TBA1_PEA Tubulin alpha-1 chain >gi|525332|g 239 2e-63 gi|110742192|dbj|BAE99023.1| tubulin alpha-2/alpha-4 chain [Arab 239 3e-63 gi|56481443|gb|AAV92352.1| alpha tubulin 1 [Pseudotsuga menzi... 239 3e-63 gi|16226462|gb|AAL16174.1|AF428406_1 AT4g14960/dl3520c [Arabidop 239 3e-63 gi|76573359|gb|ABA46784.1| alpha-tubulin-like protein [Solanum t 239 3e-63 gi|115484939|ref|NP_001067613.1| Os11g0247300 [Oryza sativa (... 239 3e-63 gi|15220329|ref|NP_171974.1| TUA4 [Arabidopsis thaliana] >gi|... 239 3e-63 gi|29423813|gb|AAO73546.1| alpha-tubulin [Ceratopteris richar... 239 4e-63 gi|135411|sp|P14641|TBA2_MAIZE Tubulin alpha-2 chain (Alpha-2... 239 4e-63 gi|3163946|emb|CAA06619.1| alpha-tubulin 1 [Eleusine indica] 239 4e-63 gi|6094429|sp|O22347|TBA1_ELEIN Tubulin alpha-1 chain (Alpha-... 239 4e-63 gi|135398|sp|P14640|TBA1_MAIZE Tubulin alpha-1 chain (Alpha-1... 239 4e-63 gi|51988174|emb|CAE52515.1| alpha tubulin [Setaria viridis] 238 5e-63 gi|11967906|dbj|BAB19779.1| alpha tubulin [Nicotiana tabacum] 238 5e-63 gi|34733239|gb|AAQ81585.1| putative tubulin alpha-2/alpha-4 chai 238 9e-63 gi|60476110|gb|AAX21196.1| putative alpha-tubulin [Solanum betac 237 1e-62 gi|54036493|sp|Q6VAG0|TBA2_GOSHI Tubulin alpha-2 chain (Alpha... 237 1e-62 gi|54036492|sp|Q6VAF9|TBA4_GOSHI Tubulin alpha-4 chain (Alpha... 237 1e-62 gi|91940067|gb|ABE66388.1| alpha-tubulin [Striga asiatica] 237 2e-62 gi|1136122|emb|CAA62917.1| alfa-tubulin [Oryza sativa (japonica 237 2e-62 gi|23452339|gb|AAN33000.1| alpha-tubulin 4 [Gossypium hirsutum] 237 2e-62 gi|27819095|gb|AAO23139.1| alpha tubulin [Populus tremuloides] 237 2e-62 gi|29124983|gb|AAO63781.1| alpha-tubulin 1 [Populus tremuloides] 237 2e-62 gi|25396550|dbj|BAC24800.1| alpha tubulin [Physcomitrella patens 236 2e-62 gi|110617748|gb|ABG78593.1| alpha-tubulin [Oryza sativa (japonic 236 3e-62 gi|49036476|sp|Q9FT36|TBA_DAUCA Tubulin alpha chain >gi|99659... 236 3e-62 gi|6723478|emb|CAB66336.1| alpha-tubulin [Betula pendula] 236 3e-62 gi|15029368|gb|AAK81858.1|AF394915_1 alpha tubulin subunit [Rosa 236 3e-62 gi|54036494|sp|Q6VAG1|TBA1_GOSHI Tubulin alpha-1 chain (Alpha... 236 3e-62 gi|93359562|gb|ABF13307.1| alpha-tubulin [Phaseolus vulgaris] 235 6e-62 gi|464840|sp|P33623|TBA1_ANEPH Tubulin alpha-1 chain >gi|2964... 233 2e-61 gi|99082883|gb|ABC59068.2| alpha tubulin 1 [Camellia sinensis] 233 2e-61 gi|8928409|sp|Q9ZRJ4|TBA_CHLVU Tubulin alpha chain >gi|416222... 233 2e-61 gi|108710848|gb|ABF98643.1| Tubulin alpha-1 chain, putative, ... 231 6e-61 gi|115455063|ref|NP_001051132.1| Os03g0726100 [Oryza sativa (... 231 6e-61 gi|25396545|dbj|BAC24799.1| alpha tubulin [Physcomitrella patens 231 8e-61 gi|25264668|emb|CAD32379.1| tubulin alpha [Oryza sativa (indica 230 2e-60 gi|2613143|gb|AAB84298.1| tubulin [Oryza sativa] 230 2e-60 gi|2625156|gb|AAB86649.1| alpha-tubulin [Chloromonas sp. ANT1] 229 2e-60 gi|63126536|gb|AAX63396.1| alpha-tubulin [Haematococcus pluviali 229 2e-60 gi|135394|sp|P09204|TBA1_CHLRE Tubulin alpha-1 chain >gi|1674... 229 4e-60 gi|135404|sp|P11481|TBA1_VOLCA Tubulin alpha-1/alpha-2 chain ... 229 4e-60 gi|135409|sp|P09205|TBA2_CHLRE Tubulin alpha-2 chain >gi|167450| 229 4e-60 gi|1136120|emb|CAA62916.1| alpha-tubulin [Oryza sativa (japonica 228 5e-60 gi|135417|sp|P22275|TBA3_MAIZE Tubulin alpha-3 chain (Alpha-3... 228 5e-60 gi|2625154|gb|AAB86648.1| alpha-tubulin [Chloromonas sp. ANT3] 227 1e-59 gi|51988172|emb|CAE52514.1| alpha tubulin [Setaria viridis] 221 7e-58 gi|15241168|ref|NP_197478.1| TUA3 [Arabidopsis thaliana] >gi|... 221 9e-58 gi|57867865|gb|AAW57312.1| alpha-tubulin [Ceratopteris richardii 219 3e-57 gi|115472953|ref|NP_001060075.1| Os07g0574800 [Oryza sativa (... 219 4e-57 gi|7271241|emb|CAB77671.1| alpha-tubulin [Miscanthus sinensis f. 218 6e-57 gi|83283967|gb|ABC01891.1| tubulin alpha-5 chain-like protein [S 218 1e-56 gi|82400128|gb|ABB72803.1| alpha-tubulin-like protein [Solanum t 218 1e-56 gi|62546341|gb|AAX86047.1| tubulin A [Glycine max] 217 2e-56 gi|37936218|emb|CAD26886.1| alpha-tubulin [Miscanthus sinensis] 216 3e-56 gi|37936212|emb|CAD24766.1| alpha-tubulin [Miscanthus sinensis] 216 3e-56 gi|6094431|sp|O22349|TBA3_ELEIN Tubulin alpha-3 chain (Alpha-... 216 3e-56 gi|464846|sp|P33627|TBA6_MAIZE Tubulin alpha-6 chain (Alpha-6... 216 3e-56 gi|49659780|gb|AAT68202.1| alpha 1 tubulin [Cynodon dactylon] 216 4e-56 gi|37936220|emb|CAD26887.1| alpha-tubulin [Miscanthus sinensis] 215 5e-56 gi|37936214|emb|CAD24767.1| alpha-tubulin [Miscanthus floridulus 215 5e-56 gi|37936232|emb|CAD26893.1| alpha-tubulin [Miscanthus floridulus 215 5e-56 gi|7271243|emb|CAB77672.1| alpha-tubulin [Miscanthus transmorris 215 6e-56 gi|8928419|sp|Q43473|TBA1_HORVU Tubulin alpha-1 chain >gi|147... 214 8e-56 gi|37936228|emb|CAD26891.1| alpha-tubulin [Miscanthus floridulus 214 1e-55 gi|37936210|emb|CAD24765.1| alpha-tubulin [Miscanthus sinensis] 214 1e-55 gi|37936230|emb|CAD26892.1| alpha-tubulin [Miscanthus floridulus 214 1e-55 gi|37936216|emb|CAD24768.1| alpha-tubulin [Miscanthus floridulus 213 2e-55 gi|37936226|emb|CAD26890.1| alpha-tubulin [Miscanthus sinensis v 213 2e-55 gi|401161|sp|Q02245|TBA5_MAIZE Tubulin alpha-5 chain (Alpha-5... 213 2e-55 gi|37936224|emb|CAD26889.1| alpha-tubulin [Miscanthus transmorri 212 4e-55 gi|77999295|gb|ABB16994.1| unknown [Solanum tuberosum] 212 4e-55 gi|8928404|sp|Q38771|TBA_AVESA Tubulin alpha chain >gi|127920... 212 4e-55 gi|116059394|emb|CAL55101.1| Beta tubulin (ISS) [Ostreococcus ta 211 7e-55 gi|15217737|ref|NP_176654.1| TUA1 (ALPHA-1 TUBULIN) [Arabidop... 210 2e-54 gi|226261|prf||1503274A alpha1 tubulin 210 2e-54 gi|37936222|emb|CAD26888.1| alpha-tubulin [Miscanthus transmorri 210 2e-54 gi|6094430|sp|O22348|TBA2_ELEIN Tubulin alpha-2 chain (Alpha-... 209 3e-54 gi|115451599|ref|NP_001049400.1| Os03g0219300 [Oryza sativa (... 208 8e-54 gi|50428725|gb|AAT77076.1| alpha tubulin [Oryza sativa (japonica 207 2e-53 gi|76257853|gb|ABA41244.1| alpha-tubulin [Mesostigma viride] 204 1e-52 gi|76257855|gb|ABA41245.1| alpha-tubulin [Mesostigma viride] 204 1e-52 gi|116060752|emb|CAL57230.1| Beta tubulin (ISS) [Ostreococcus ta 201 1e-51 gi|76257847|gb|ABA41241.1| alpha-tubulin [Coleochaete scutata] 200 2e-51 gi|76257851|gb|ABA41243.1| alpha-tubulin [Mantoniella squamata] 199 4e-51 gi|76257849|gb|ABA41242.1| alpha-tubulin [Mantoniella squamata] 199 4e-51 gi|76257861|gb|ABA41248.1| alpha-tubulin [Pterosperma cristatum] 199 4e-51 gi|76257863|gb|ABA41249.1| alpha-tubulin [Pterosperma cristatum] 196 2e-50
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 226 Number of extensions: 9 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 463 Length of database: 101054579 Length adjustment: 103 Effective length of query: 360 Effective length of database: 71869632 Effective search space: 3665351232 Effective search space used: 3665351232 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 62 (28.5 bits)