RID=1168927568-22295-129515525247.BLASTQ1, Contig42

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168927568-22295-129515525247.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig42
Length=394

Distribution of 35 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|3319340|gb|AAC26229.1|  contains similarity to E. coli cati...  78.6    6e-15
gi|15239626|ref|NP_197994.1|  unknown protein [Arabidopsis tha...  78.6    6e-15 
gi|82623379|gb|ABB87104.1|  ChaC-like family protein-like [Solanu  73.9    2e-13
gi|76573349|gb|ABA46779.1|  meloidogyne-induced giant cell pro...  73.9    2e-13 
gi|115446063|ref|NP_001046811.1|  Os02g0465900 [Oryza sativa (...  73.2    3e-13 
gi|27525010|emb|CAD38520.1|  putative cation transporter [Beta pr  73.2    3e-13
gi|18417778|ref|NP_567871.1|  unknown protein [Arabidopsis tha...  72.4    4e-13 
gi|2827524|emb|CAA16532.1|  predicted protein [Arabidopsis tha...  72.4    4e-13
gi|21593515|gb|AAM65482.1|  unknown [Arabidopsis thaliana]         72.4    4e-13 
gi|115458648|ref|NP_001052924.1|  Os04g0448600 [Oryza sativa (...  63.9    2e-10 
gi|18401334|ref|NP_564490.1|  unknown protein [Arabidopsis tha...  59.3    4e-09 
gi|12083292|gb|AAG48805.1|AF332442_1  unknown protein [Arabidopsi  57.4    1e-08 
gi|8655989|gb|AAF78262.1|AC020576_6  Contains similarity to ca...  57.4    1e-08
gi|116055906|emb|CAL57991.1|  Predicted cation transporter (ISS)   38.1    0.009
gi|46981262|gb|AAT07580.1|  hypothetical protein [Oryza sativa (j  30.8    1.5   
gi|115462191|ref|NP_001054695.1|  Os05g0156200 [Oryza sativa (...  30.8    1.5   
gi|115447417|ref|NP_001047488.1|  Os02g0628600 [Oryza sativa (...  27.3    1.6   
gi|48717038|dbj|BAD23727.1|  putative auxin response factor 10...  27.3    1.6   
gi|18700082|gb|AAL77653.1|  AT5g17790/MVA3_140 [Arabidopsis th...  30.0    2.5   
gi|15238027|ref|NP_197281.1|  VAR3 (VARIEGATED 3); binding [Ar...  30.0    2.5   
gi|37542393|gb|AAL09834.1|  ZnF_RBZ domain protein [Arabidopsis t  29.6    3.3   
gi|87240745|gb|ABD32603.1|  FAD linked oxidase, N-terminal [Medic  29.6    3.3  
gi|62319883|dbj|BAD93938.1|  berberine bridge enzyme - like prote  29.3    4.3   
gi|14194127|gb|AAK56258.1|AF367269_1  AT4g20860/T13K14_20 [Ara...  29.3    4.3   
gi|15233424|ref|NP_193818.1|  electron carrier/ oxidoreductase...  29.3    4.3   
gi|110739321|dbj|BAF01573.1|  hypothetical protein [Arabidopsis t  28.9    5.6  
gi|22326954|ref|NP_680191.1|  unknown protein [Arabidopsis tha...  28.9    5.6   
gi|70794968|gb|AAZ08458.1|  RNA polymerase II second largest s...  28.5    7.4  
gi|46277283|gb|AAS86832.1|  RNA polymerase II second largest s...  28.5    7.4  
gi|38345528|emb|CAD41298.2|  OSJNBa0020J04.3 [Oryza sativa (japon  28.5    7.4   
gi|115478571|ref|NP_001062879.1|  Os09g0325100 [Oryza sativa (...  28.1    9.6   
gi|48716749|dbj|BAD23451.1|  hypothetical protein [Oryza sativa (  28.1    9.6   
gi|15238830|ref|NP_200185.1|  unknown protein [Arabidopsis tha...  28.1    9.6

Alignments

 

>gi|3319340|gb|AAC26229.1|  contains similarity to E. coli cation transport protein ChaC 
(GB:D90756) [Arabidopsis thaliana]
Length=197

 Score = 78.6 bits (192),  Expect = 6e-15
 Identities = 32/36 (88%), Positives = 36/36 (100%), Gaps = 0/36 (0%)
 Frame = +2

Query  287  MVLWVFGYGSLVWNPGFDFDEKIIGFIKDYRRVFDL  394
            MVLWVFGYGSL+WNPGFDFDEK+IG+IKDY+RVFDL
Sbjct  1    MVLWVFGYGSLIWNPGFDFDEKLIGYIKDYKRVFDL  36


>gi|15239626|ref|NP_197994.1|  unknown protein [Arabidopsis thaliana]
 gi|26450775|dbj|BAC42496.1|  unknown protein [Arabidopsis thaliana]
 gi|28950749|gb|AAO63298.1|  At5g26220 [Arabidopsis thaliana]
Length=216

 Score = 78.6 bits (192),  Expect = 6e-15
 Identities = 32/36 (88%), Positives = 36/36 (100%), Gaps = 0/36 (0%)
 Frame = +2

Query  287  MVLWVFGYGSLVWNPGFDFDEKIIGFIKDYRRVFDL  394
            MVLWVFGYGSL+WNPGFDFDEK+IG+IKDY+RVFDL
Sbjct  1    MVLWVFGYGSLIWNPGFDFDEKLIGYIKDYKRVFDL  36


>gi|82623379|gb|ABB87104.1|  ChaC-like family protein-like [Solanum tuberosum]
Length=231

 Score = 73.9 bits (180),  Expect = 2e-13
 Identities = 29/36 (80%), Positives = 35/36 (97%), Gaps = 0/36 (0%)
 Frame = +2

Query  287  MVLWVFGYGSLVWNPGFDFDEKIIGFIKDYRRVFDL  394
            MV W+FGYGSLVWNPGF++DEK+IG+IKDY+RVFDL
Sbjct  1    MVFWIFGYGSLVWNPGFEYDEKMIGYIKDYKRVFDL  36


>gi|76573349|gb|ABA46779.1|  meloidogyne-induced giant cell protein-like protein [Solanum 
tuberosum]
Length=227

 Score = 73.9 bits (180),  Expect = 2e-13
 Identities = 29/36 (80%), Positives = 35/36 (97%), Gaps = 0/36 (0%)
 Frame = +2

Query  287  MVLWVFGYGSLVWNPGFDFDEKIIGFIKDYRRVFDL  394
            MV W+FGYGSLVWNPGF++DEK+IG+IKDY+RVFDL
Sbjct  1    MVFWIFGYGSLVWNPGFEYDEKMIGYIKDYKRVFDL  36


>gi|115446063|ref|NP_001046811.1|  Os02g0465900 [Oryza sativa (japonica cultivar-group)]
 gi|47497507|dbj|BAD19560.1|  putative OsCTTP [Oryza sativa (japonica cultivar-group)]
 gi|113536342|dbj|BAF08725.1|  Os02g0465900 [Oryza sativa (japonica cultivar-group)]
Length=216

 Score = 73.2 bits (178),  Expect = 3e-13
 Identities = 29/36 (80%), Positives = 34/36 (94%), Gaps = 0/36 (0%)
 Frame = +2

Query  287  MVLWVFGYGSLVWNPGFDFDEKIIGFIKDYRRVFDL  394
            MVLWVFGYGSL+WNPGFDFDEKI+GF+K Y+R F+L
Sbjct  1    MVLWVFGYGSLIWNPGFDFDEKILGFVKGYKRTFNL  36


>gi|27525010|emb|CAD38520.1|  putative cation transporter [Beta procumbens]
Length=222

 Score = 73.2 bits (178),  Expect = 3e-13
 Identities = 28/36 (77%), Positives = 34/36 (94%), Gaps = 0/36 (0%)
 Frame = +2

Query  287  MVLWVFGYGSLVWNPGFDFDEKIIGFIKDYRRVFDL  394
            MV W+FGYGSLVWNPGF +DEK++G+IKDY+RVFDL
Sbjct  1    MVFWIFGYGSLVWNPGFQYDEKVLGYIKDYKRVFDL  36


>gi|18417778|ref|NP_567871.1|  unknown protein [Arabidopsis thaliana]
 gi|30102602|gb|AAP21219.1|  At4g31290 [Arabidopsis thaliana]
 gi|110743783|dbj|BAE99727.1|  hypothetical protein [Arabidopsis thaliana]
Length=227

 Score = 72.4 bits (176),  Expect = 4e-13
 Identities = 29/36 (80%), Positives = 34/36 (94%), Gaps = 0/36 (0%)
 Frame = +2

Query  287  MVLWVFGYGSLVWNPGFDFDEKIIGFIKDYRRVFDL  394
            MV+WVFGYGSLVWNPGF +DEK++GFIK Y+RVFDL
Sbjct  1    MVMWVFGYGSLVWNPGFHYDEKVLGFIKGYKRVFDL  36


>gi|2827524|emb|CAA16532.1|  predicted protein [Arabidopsis thaliana]
 gi|7270031|emb|CAB79847.1|  predicted protein [Arabidopsis thaliana]
Length=250

 Score = 72.4 bits (176),  Expect = 4e-13
 Identities = 29/36 (80%), Positives = 34/36 (94%), Gaps = 0/36 (0%)
 Frame = +2

Query  287  MVLWVFGYGSLVWNPGFDFDEKIIGFIKDYRRVFDL  394
            MV+WVFGYGSLVWNPGF +DEK++GFIK Y+RVFDL
Sbjct  1    MVMWVFGYGSLVWNPGFHYDEKVLGFIKGYKRVFDL  36


>gi|21593515|gb|AAM65482.1|  unknown [Arabidopsis thaliana]
Length=227

 Score = 72.4 bits (176),  Expect = 4e-13
 Identities = 29/36 (80%), Positives = 34/36 (94%), Gaps = 0/36 (0%)
 Frame = +2

Query  287  MVLWVFGYGSLVWNPGFDFDEKIIGFIKDYRRVFDL  394
            MV+WVFGYGSLVWNPGF +DEK++GFIK Y+RVFDL
Sbjct  1    MVMWVFGYGSLVWNPGFHYDEKVLGFIKGYKRVFDL  36


>gi|115458648|ref|NP_001052924.1|  Os04g0448600 [Oryza sativa (japonica cultivar-group)]
 gi|38344831|emb|CAD40871.2|  OSJNBa0064H22.12 [Oryza sativa (japonica cultivar-group)]
 gi|113564495|dbj|BAF14838.1|  Os04g0448600 [Oryza sativa (japonica cultivar-group)]
 gi|116310065|emb|CAH67086.1|  H0818E04.3 [Oryza sativa (indica cultivar-group)]
 gi|116310188|emb|CAH67200.1|  OSIGBa0152K17.12 [Oryza sativa (indica cultivar-group)]
Length=187

 Score = 63.9 bits (154),  Expect = 2e-10
 Identities = 24/34 (70%), Positives = 30/34 (88%), Gaps = 0/34 (0%)
 Frame = +2

Query  287  MVLWVFGYGSLVWNPGFDFDEKIIGFIKDYRRVF  388
            M +WVFGYGSLVWNPGF  D +++GF++DYRRVF
Sbjct  1    MAMWVFGYGSLVWNPGFAHDARLVGFVRDYRRVF  34


>gi|18401334|ref|NP_564490.1|  unknown protein [Arabidopsis thaliana]
 gi|29893538|gb|AAP06821.1|  unknown protein [Arabidopsis thaliana]
 gi|110736693|dbj|BAF00310.1|  hypothetical protein [Arabidopsis thaliana]
Length=199

 Score = 59.3 bits (142),  Expect = 4e-09
 Identities = 24/34 (70%), Positives = 27/34 (79%), Gaps = 0/34 (0%)
 Frame = +2

Query  287  MVLWVFGYGSLVWNPGFDFDEKIIGFIKDYRRVF  388
            M +WVFGYGSL+W  GF FDE + GFIK YRRVF
Sbjct  1    MAMWVFGYGSLIWKTGFPFDESLPGFIKGYRRVF  34


>gi|12083292|gb|AAG48805.1|AF332442_1  unknown protein [Arabidopsis thaliana]
Length=197

 Score = 57.4 bits (137),  Expect = 1e-08
 Identities = 23/32 (71%), Positives = 26/32 (81%), Gaps = 0/32 (0%)
 Frame = +2

Query  293  LWVFGYGSLVWNPGFDFDEKIIGFIKDYRRVF  388
            +WVFGYGSL+W  GF FDE + GFIK YRRVF
Sbjct  1    MWVFGYGSLIWKTGFPFDESLPGFIKGYRRVF  32


>gi|8655989|gb|AAF78262.1|AC020576_6  Contains similarity to cation transport protein CHAC from Escherichia 
coli gi|2506988.  ESTs gb|AA605474, gb|AI995104, gb|R90162 
come from this gene. [Arabidopsis thaliana]
Length=180

 Score = 57.4 bits (137),  Expect = 1e-08
 Identities = 23/32 (71%), Positives = 26/32 (81%), Gaps = 0/32 (0%)
 Frame = +2

Query  293  LWVFGYGSLVWNPGFDFDEKIIGFIKDYRRVF  388
            +WVFGYGSL+W  GF FDE + GFIK YRRVF
Sbjct  1    MWVFGYGSLIWKTGFPFDESLPGFIKGYRRVF  32


>gi|116055906|emb|CAL57991.1|  Predicted cation transporter (ISS) [Ostreococcus tauri]
Length=222

 Score = 38.1 bits (87),  Expect = 0.009
 Identities = 13/19 (68%), Positives = 17/19 (89%), Gaps = 0/19 (0%)
 Frame = +2

Query  293  LWVFGYGSLVWNPGFDFDE  349
            LWVFGYGS+VW  GF+++E
Sbjct  43   LWVFGYGSIVWRVGFEYEE  61


>gi|46981262|gb|AAT07580.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=1793

 Score = 30.8 bits (68),  Expect = 1.5
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
 Frame = -3

Query  329  GSRPGNHTQKPTAPSSLTRNSLLYKQSYLSRNPRRRQEGICR  204
            G RP NHT +P+ PSS + +S     S   R+PRR  +  CR
Sbjct  368  GQRPRNHTLEPSDPSSSSSSS---SSSSSDRHPRRTYD--CR  404


>gi|115462191|ref|NP_001054695.1|  Os05g0156200 [Oryza sativa (japonica cultivar-group)]
 gi|54291858|gb|AAV32226.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|57863917|gb|AAS55768.2|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113578246|dbj|BAF16609.1|  Os05g0156200 [Oryza sativa (japonica cultivar-group)]
Length=288

 Score = 30.8 bits (68),  Expect = 1.5
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 0/43 (0%)
 Frame = +1

Query  100  PGVSNTHLLFGPSLSQIHLPHRNESPRGIFLDFRDRQIPSCLL  228
            P  S T  +  PS S +  PHR + P+   L      +PSC L
Sbjct  101  PNGSQTDAMVSPSTSPMSSPHRFQKPQSGLLSANPYPLPSCSL  143


>gi|115447417|ref|NP_001047488.1|  Os02g0628600 [Oryza sativa (japonica cultivar-group)]
 gi|113537019|dbj|BAF09402.1|  Os02g0628600 [Oryza sativa (japonica cultivar-group)]
Length=821

 Score = 27.3 bits (59),  Expect(2) = 1.6
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 0/19 (0%)
 Frame = +1

Query  118  HLLFGPSLSQIHLPHRNES  174
            H  FGPSLS +HL H   S
Sbjct  450  HAQFGPSLSDLHLTHLQSS  468


 Score = 21.9 bits (45),  Expect(2) = 1.6
 Identities = 7/12 (58%), Positives = 10/12 (83%), Gaps = 0/12 (0%)
 Frame = +3

Query  213  TFLPPPRVSTQI  248
            T +PPPR+ST +
Sbjct  483  TSIPPPRISTDL  494


>gi|48717038|dbj|BAD23727.1|  putative auxin response factor 10 [Oryza sativa (japonica cultivar-group)]
Length=681

 Score = 27.3 bits (59),  Expect(2) = 1.6
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 0/19 (0%)
 Frame = +1

Query  118  HLLFGPSLSQIHLPHRNES  174
            H  FGPSLS +HL H   S
Sbjct  450  HAQFGPSLSDLHLTHLQSS  468


 Score = 21.9 bits (45),  Expect(2) = 1.6
 Identities = 7/12 (58%), Positives = 10/12 (83%), Gaps = 0/12 (0%)
 Frame = +3

Query  213  TFLPPPRVSTQI  248
            T +PPPR+ST +
Sbjct  483  TSIPPPRISTDL  494


>gi|18700082|gb|AAL77653.1|  AT5g17790/MVA3_140 [Arabidopsis thaliana]
 gi|25090163|gb|AAN72244.1|  At5g17790/MVA3_140 [Arabidopsis thaliana]
Length=758

 Score = 30.0 bits (66),  Expect = 2.5
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 0/42 (0%)
 Frame = +3

Query  153  FASPKRIAEGHLP*FPRPADTFLPPPRVSTQIGLLVQETVSG  278
            F S + I    +P  P P+D F   P+  TQIGL+    V G
Sbjct  468  FESSQGINTDFVPFVPLPSDMFAKKPKEETQIGLIDNIQVDG  509


>gi|15238027|ref|NP_197281.1|  VAR3 (VARIEGATED 3); binding [Arabidopsis thaliana]
 gi|56749785|sp|Q8S9K3|VAR3_ARATH  Zinc finger protein VAR3, chloroplast precursor (VARIEGATED 3 
protein)
 gi|9759056|dbj|BAB09578.1|  unnamed protein product [Arabidopsis thaliana]
Length=758

 Score = 30.0 bits (66),  Expect = 2.5
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 0/42 (0%)
 Frame = +3

Query  153  FASPKRIAEGHLP*FPRPADTFLPPPRVSTQIGLLVQETVSG  278
            F S + I    +P  P P+D F   P+  TQIGL+    V G
Sbjct  468  FESSQGINTDFVPFVPLPSDMFAKKPKEETQIGLIDNIQVDG  509


>gi|37542393|gb|AAL09834.1|  ZnF_RBZ domain protein [Arabidopsis thaliana]
Length=758

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 0/42 (0%)
 Frame = +3

Query  153  FASPKRIAEGHLP*FPRPADTFLPPPRVSTQIGLLVQETVSG  278
            F S + I    +P  P P+D F   P+  TQIGL     + G
Sbjct  468  FESSQGINTDFVPFVPLPSDMFAKKPKEETQIGLTDNNQIDG  509


>gi|87240745|gb|ABD32603.1|  FAD linked oxidase, N-terminal [Medicago truncatula]
Length=528

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 0/36 (0%)
 Frame = +1

Query  106  VSNTHLLFGPSLSQIHLPHRNESPRGIFLDFRDRQI  213
            VS  H+ F  S  +   P+ + SPR  FL++RD  I
Sbjct  440  VSERHVNFSRSFFEFMTPYVSTSPREAFLNYRDADI  475


>gi|62319883|dbj|BAD93938.1|  berberine bridge enzyme - like protein [Arabidopsis thaliana]
Length=129

 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 0/36 (0%)
 Frame = +1

Query  112  NTHLLFGPSLSQIHLPHRNESPRGIFLDFRDRQIPS  219
            N H+ +  SL     P+ ++SPRG +L++RD  + S
Sbjct  45   NKHVRWMRSLHDYMTPYVSKSPRGAYLNYRDLDLGS  80


>gi|14194127|gb|AAK56258.1|AF367269_1  AT4g20860/T13K14_20 [Arabidopsis thaliana]
 gi|22137202|gb|AAM91446.1|  AT4g20860/T13K14_20 [Arabidopsis thaliana]
Length=530

 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 0/36 (0%)
 Frame = +1

Query  112  NTHLLFGPSLSQIHLPHRNESPRGIFLDFRDRQIPS  219
            N H+ +  SL     P+ ++SPRG +L++RD  + S
Sbjct  446  NKHVRWMRSLHDYMTPYVSKSPRGAYLNYRDLDLGS  481


>gi|15233424|ref|NP_193818.1|  electron carrier/ oxidoreductase [Arabidopsis thaliana]
 gi|5262776|emb|CAB45881.1|  berberine bridge enzyme-like protein [Arabidopsis thaliana]
 gi|7268882|emb|CAB79086.1|  berberine bridge enzyme-like protein [Arabidopsis thaliana]
Length=530

 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 0/36 (0%)
 Frame = +1

Query  112  NTHLLFGPSLSQIHLPHRNESPRGIFLDFRDRQIPS  219
            N H+ +  SL     P+ ++SPRG +L++RD  + S
Sbjct  446  NKHVRWMRSLHDYMTPYVSKSPRGAYLNYRDLDLGS  481


>gi|110739321|dbj|BAF01573.1|  hypothetical protein [Arabidopsis thaliana]
Length=284

 Score = 28.9 bits (63),  Expect = 5.6
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 0/21 (0%)
 Frame = -3

Query  191  RKMPLGDSFR*GKWIWEREGP  129
            R  P  DS   G+W WER+GP
Sbjct  39   RDQPYSDSQAEGQWRWERDGP  59


>gi|22326954|ref|NP_680191.1|  unknown protein [Arabidopsis thaliana]
 gi|13374863|emb|CAC34497.1|  putative protein [Arabidopsis thaliana]
 gi|54261725|gb|AAV31166.1|  At5g22040 [Arabidopsis thaliana]
 gi|58531330|gb|AAW78587.1|  At5g22040 [Arabidopsis thaliana]
Length=284

 Score = 28.9 bits (63),  Expect = 5.6
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 0/21 (0%)
 Frame = -3

Query  191  RKMPLGDSFR*GKWIWEREGP  129
            R  P  DS   G+W WER+GP
Sbjct  39   RDQPYSDSQAEGQWRWERDGP  59


>gi|70794968|gb|AAZ08458.1|  RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length=1207

 Score = 28.5 bits (62),  Expect = 7.4
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
 Frame = +1

Query  82   ARVCRNPGVSNTH--------LLFGPSLSQIHLPHRNESPRGIFLDFRDRQIPSCLLLGF  237
            AR+C +   S T+        L+ G   S I  P  N+SPR  +     +Q     +  +
Sbjct  706  ARLCPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY  765

Query  238  RLK*DCL  258
            +L+ D L
Sbjct  766  QLRMDTL  772


>gi|46277283|gb|AAS86832.1|  RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length=580

 Score = 28.5 bits (62),  Expect = 7.4
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
 Frame = +1

Query  82   ARVCRNPGVSNTH--------LLFGPSLSQIHLPHRNESPRGIFLDFRDRQIPSCLLLGF  237
            AR+C +   S T+        L+ G   S I  P  N+SPR  +     +Q     +  +
Sbjct  173  ARLCPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY  232

Query  238  RLK*DCL  258
            +L+ D L
Sbjct  233  QLRMDTL  239


>gi|38345528|emb|CAD41298.2|  OSJNBa0020J04.3 [Oryza sativa (japonica cultivar-group)]
Length=349

 Score = 28.5 bits (62),  Expect = 7.4
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 0/27 (0%)
 Frame = -1

Query  349  LIEIKTRVPDQGTIPKNPQHHRHLPET  269
            L+E+  RVP +       +HHR LPET
Sbjct  51   LVEVHPRVPSELDYSFQTRHHRDLPET  77


>gi|115478571|ref|NP_001062879.1|  Os09g0325100 [Oryza sativa (japonica cultivar-group)]
 gi|113631112|dbj|BAF24793.1|  Os09g0325100 [Oryza sativa (japonica cultivar-group)]
Length=727

 Score = 28.1 bits (61),  Expect = 9.6
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 0/27 (0%)
 Frame = -1

Query  352  FLIEIKTRVPDQGTIPKNPQHHRHLPE  272
            F++++  + P   +I +NP H R LPE
Sbjct  410  FIVDVSAKHPKNDSIFENPSHLRQLPE  436


>gi|48716749|dbj|BAD23451.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=646

 Score = 28.1 bits (61),  Expect = 9.6
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 0/27 (0%)
 Frame = -1

Query  352  FLIEIKTRVPDQGTIPKNPQHHRHLPE  272
            F++++  + P   +I +NP H R LPE
Sbjct  283  FIVDVSAKHPKNDSIFENPSHLRQLPE  309


>gi|15238830|ref|NP_200185.1|  unknown protein [Arabidopsis thaliana]
 gi|9759068|dbj|BAB09546.1|  unnamed protein product [Arabidopsis thaliana]
Length=275

 Score = 28.1 bits (61),  Expect = 9.6
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -1

Query  367  NEANYFLIEIKTRVPDQG-TIPKN-PQHHRHLPETV  266
            NE+NY   +   R P QG T P N P  HR  P T+
Sbjct  196  NESNYKTCQTAVRPPQQGRTEPSNDPLQHRMRPRTI  231

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 264
Number of extensions: 4
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 394
Length of database: 101054579
Length adjustment: 97
Effective length of query: 297
Effective length of database: 73569726
Effective search space: 2501370684
Effective search space used: 2501370684
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)