RID=1168927595-11388-181686133917.BLASTQ1, Contig44

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168927595-11388-181686133917.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Score E Sequences producing significant alignments: (Bits) Value gi|115465393|ref|NP_001056296.1| Os05g0558800 [Oryza sativa (... 32.7 0.43

gi|15220823|ref|NP_178188.1| ZFP1; nucleic acid binding / tra... 31.6 0.96

gi|92887259|gb|ABE88777.1| DNA-binding HORMA [Medicago truncatul 29.3 4.8

Alignments

 

>gi|115465393|ref|NP_001056296.1|  Os05g0558800 [Oryza sativa (japonica cultivar-group)]
 gi|50878319|gb|AAT85094.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113579847|dbj|BAF18210.1|  Os05g0558800 [Oryza sativa (japonica cultivar-group)]
Length=451

 Score = 32.7 bits (73),  Expect = 0.43
 Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
 Frame = +2

Query  137  MEDENglelslglscggssgksksRDVPSDTKVDNGSSTKLSGGNVTASDVSFKNFFQTS  316
            M+DENGLELSLGLS GG+SGKSK+RD P + K +       S G     +  F +++QT+
Sbjct  1    MDDENGLELSLGLSLGGTSGKSKARDAPLEPKAEPQVEESSSKGVSQTPEAPFVHYYQTN  60

Query  317  VENQDHQDHNGKQKVDP  367
             EN   Q+H+ KQ+  P
Sbjct  61   AEN---QEHSSKQRHSP  74


>gi|15220823|ref|NP_178188.1|  ZFP1; nucleic acid binding / transcription factor/ zinc ion binding 
[Arabidopsis thaliana]
 gi|27923894|sp|Q42485|ZFP1_ARATH  Zinc finger protein 1
 gi|6503285|gb|AAF14661.1|AC011713_9  Identical to gi|S55881 zinc finger protein 1 from Arabidopsis 
thaliana
 gi|790673|gb|AAA87297.1|  zinc finger protein
 gi|1297186|gb|AAA98913.1|  zinc finger protein 1
 gi|111074280|gb|ABH04513.1|  At1g80730 [Arabidopsis thaliana]
Length=228

 Score = 31.6 bits (70),  Expect = 0.96
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 0/39 (0%)
 Frame = +2

Query  251  TKLSGGNVTASDVSFKNFFQTSVENQDHQDHNGKQKVDP  367
            T LS G  T+S+++  + F+TS  +  H  H  +Q  DP
Sbjct  27   TLLSRGTATSSELNLIDSFKTSSSSTSHHQHQQEQLADP  65


>gi|92887259|gb|ABE88777.1|  DNA-binding HORMA [Medicago truncatula]
Length=204

 Score = 29.3 bits (64),  Expect = 4.8
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 0/33 (0%)
 Frame = -1

Query  338  LGGLGSQHSFERSS*MRHQKQLHCHPTIWYYYH  240
            L G+  Q +FER+  M    Q  CHP + YY H
Sbjct  31   LKGIYPQGAFERARYMNVVVQRACHPQLRYYIH  63

Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 303 Number of extensions: 8 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 419 Length of database: 101054579 Length adjustment: 101 Effective length of query: 318 Effective length of database: 72436330 Effective search space: 2752580540 Effective search space used: 2752580540 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)

Distribution of 3 Blast Hits on the Query Sequence