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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168923560-5016-46462686135.BLASTQ1


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,458,890 sequences; 1,532,996,420 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig5
Length=280

Distribution of 6 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|108710872|gb|ABF98667.1|  pentatricopeptide, putative [Oryz...  36.2    0.035
gi|50428705|gb|AAT77056.1|  putative GTP-binding protein [Oryz...  36.2    0.035
gi|52076527|dbj|BAD45404.1|  RING zinc finger protein-like [Or...  31.2    1.1  
gi|115444367|ref|NP_001045963.1|  Os02g0159800 [Oryza sativa (...  31.2    1.1   Gene info
gi|44889867|gb|AAS48461.1|  GASA-like protein [Gerbera hybrid cul  29.6    3.3  
gi|53791244|dbj|BAD52449.1|  unknown protein [Oryza sativa (ja...  28.1    9.6   Gene info
Alignments

>gi|108710872|gb|ABF98667.1|  pentatricopeptide, putative [Oryza sativa (japonica cultivar-group)]
Length=397

 Score = 36.2 bits (82),  Expect = 0.035
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 10/38 (26%)
 Frame = +3

Query  6   RSSPTTQPPAESDKE----------REAPRPPRLLIIR  89
           RSSPT  PPA+SD E          R+  RPPRLL+++
Sbjct  43  RSSPTASPPADSDDEGSPRGLSLLPRDPERPPRLLVVQ  80


>gi|50428705|gb|AAT77056.1|  putative GTP-binding protein [Oryza sativa (japonica cultivar-group)]
Length=408

 Score = 36.2 bits (82),  Expect = 0.035
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 10/38 (26%)
 Frame = +3

Query  6   RSSPTTQPPAESDKE----------REAPRPPRLLIIR  89
           RSSPT  PPA+SD E          R+  RPPRLL+++
Sbjct  43  RSSPTASPPADSDDEGSPRGLSLLPRDPERPPRLLVVQ  80


>gi|52076527|dbj|BAD45404.1|  RING zinc finger protein-like [Oryza sativa (japonica cultivar-group)]
Length=181

 Score = 31.2 bits (69),  Expect = 1.1
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +3

Query  9    SSPTTQPPAESDKEREAPRPPRL----LIIRCA*MAASSTCLGSNRMVKC  146
            SSP  QP   S     +P PP+L    ++I  A + A    LG N M++C
Sbjct  13   SSPEQQPMPPSSAAASSPSPPQLDYDVVVILAAMLCALVCALGLNSMLQC  62


>gi|115444367|ref|NP_001045963.1| Gene info Os02g0159800 [Oryza sativa (japonica cultivar-group)]
 gi|50251263|dbj|BAD28043.1| Gene info unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113535494|dbj|BAF07877.1| Gene info Os02g0159800 [Oryza sativa (japonica cultivar-group)]
Length=415

 Score = 31.2 bits (69),  Expect = 1.1
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 0/20 (0%)
 Frame = -2

Query  60   EPRAPYRFPRVAGWLGYCGQ  1
            E   P+R P  AGWLG CG+
Sbjct  83   EDARPFRLPAAAGWLGSCGE  102


>gi|44889867|gb|AAS48461.1|  GASA-like protein [Gerbera hybrid cultivar]
Length=150

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
 Frame = +3

Query  15   PTTQPPAESDKEREAPRPPR-------LLIIRCA*MAASSTCLGSNRMVKCC  149
            PTT PP         P PPR       L ++RC   +  + CL     V CC
Sbjct  68   PTTAPPVVKPPPATPPTPPRNTKECYPLCVVRCKLHSRQNVCL--RACVTCC  117


>gi|53791244|dbj|BAD52449.1| Gene info unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|53791323|dbj|BAD52588.1| Gene info unknown protein [Oryza sativa (japonica cultivar-group)]
Length=143

 Score = 28.1 bits (61),  Expect = 9.6
 Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 0/22 (0%)
 Frame = +3

Query  9   SSPTTQPPAESDKEREAPRPPR  74
           SSP T PPA S      PRP R
Sbjct  31  SSPPTSPPASSSPSASPPRPTR  52







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 160
Number of extensions: 1
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 280
Length of database: 101054579
Length adjustment: 63
Effective length of query: 217
Effective length of database: 83203592
Effective search space: 2496107760
Effective search space used: 2496107760
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)