Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168927841-22179-62829666663.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig5 Length=560
Score E Sequences producing significant alignments: (Bits) Value gi|116310758|emb|CAH67552.1| H0311C03.6 [Oryza sativa (indica cu 194 2e-49 gi|115459260|ref|NP_001053230.1| Os04g0501600 [Oryza sativa (... 194 2e-49 gi|92882171|gb|ABE86625.1| Tudor [Medicago truncatula] 188 1e-47 gi|17380688|gb|AAL36174.1| unknown protein [Arabidopsis thaliana 181 1e-45 gi|4584527|emb|CAB40758.1| putative protein [Arabidopsis thal... 181 1e-45 gi|30689185|ref|NP_194916.2| unknown protein [Arabidopsis tha... 181 1e-45 gi|115447271|ref|NP_001047415.1| Os02g0612800 [Oryza sativa (... 177 2e-44 gi|92869631|gb|ABE79251.1| Tudor [Medicago truncatula] 174 1e-43 gi|92882173|gb|ABE86627.1| hypothetical protein MtrDRAFT_AC16... 169 5e-42 gi|6503292|gb|AAF14668.1|AC011713_16 ESTs gb|Z34732, gb|R8994... 157 3e-38 gi|15220831|ref|NP_178196.1| unknown protein [Arabidopsis thalia 157 3e-38 gi|10177905|dbj|BAB11316.1| unnamed protein product [Arabidopsis 150 3e-36 gi|110738715|dbj|BAF01282.1| hypothetical protein [Arabidopsis t 150 3e-36 gi|79531455|ref|NP_199580.2| unknown protein [Arabidopsis thalia 150 3e-36 gi|55297386|dbj|BAD69240.1| putative Spo76 protein [Oryza sativa 147 3e-35 gi|30684623|ref|NP_173046.2| unknown protein [Arabidopsis tha... 144 3e-34 gi|89257499|gb|ABD64989.1| hypothetical protein 26.t00005 [Brass 137 2e-32 gi|110738087|dbj|BAF00977.1| T24D18.4 [Arabidopsis thaliana] 136 6e-32 gi|38344777|emb|CAE01503.2| OSJNBb0026L04.8 [Oryza sativa (ja... 136 6e-32 gi|115457744|ref|NP_001052472.1| Os04g0326000 [Oryza sativa (... 134 2e-31 gi|86361424|gb|ABC94594.1| AF-4 domain containing protein-lik... 129 5e-30 gi|115467614|ref|NP_001057406.1| Os06g0285900 [Oryza sativa (... 129 5e-30 gi|90969893|gb|ABE02738.1| AF-4 domain containing protein-lik... 129 5e-30 gi|92884879|gb|ABE87510.1| hypothetical protein MtrDRAFT_AC15... 129 7e-30 gi|87162796|gb|ABD28591.1| hypothetical protein MtrDRAFT_AC14... 127 3e-29 gi|12323390|gb|AAG51671.1|AC010704_15 hypothetical protein; 7348 82.0 1e-15 gi|30699273|ref|NP_177883.2| unknown protein [Arabidopsis thalia 82.0 1e-15 gi|116000768|emb|CAL50448.1| Sister chromatid cohesion comple... 58.5 2e-08 gi|20043069|gb|AAM08877.1|AC113339_23 Hypothetical protein [Oryz 32.3 1.2 gi|115448499|ref|NP_001048029.1| Os02g0732700 [Oryza sativa (... 31.2 2.6 gi|15217624|ref|NP_176615.1| unknown protein [Arabidopsis tha... 31.2 2.6 gi|116061301|emb|CAL52019.1| predicted CDS, putative protein ... 30.8 3.4 gi|115440553|ref|NP_001044556.1| Os01g0805000 [Oryza sativa (... 30.4 4.4 gi|108864614|gb|ABA94931.2| Armadillo/beta-catenin-like repea... 30.0 5.8 gi|108864615|gb|ABA94932.2| Armadillo/beta-catenin-like repea... 30.0 5.8 gi|79572219|ref|NP_181580.2| unknown protein [Arabidopsis tha... 29.6 7.5 gi|2651308|gb|AAB87588.1| hypothetical protein [Arabidopsis thal 29.6 7.5 gi|34393351|dbj|BAC83329.1| hypothetical protein [Oryza sativa ( 29.6 7.5 gi|115464929|ref|NP_001056064.1| Os05g0519500 [Oryza sativa (... 29.3 9.8 gi|52353696|gb|AAU44262.1| unknown protein [Oryza sativa (japoni 29.3 9.8 gi|50080321|gb|AAT69655.1| 'unknown protein, WD domain, G-bet... 29.3 9.8 gi|4733978|gb|AAD28660.1| hypothetical protein [Arabidopsis thal 29.3 9.8 gi|15217579|ref|NP_171698.1| guanyl-nucleotide exchange facto... 29.3 9.8
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 414 Number of extensions: 13 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 560 Length of database: 101054579 Length adjustment: 106 Effective length of query: 454 Effective length of database: 71019585 Effective search space: 5681566800 Effective search space used: 5681566800 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)