RID=1168928119-3955-154808313314.BLASTQ4, Contig7

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168928119-3955-154808313314.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig7
Length=312

Distribution of 23 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|1076557|pir||S54157  extensin-like protein - cowpea (fragment)  39.3    0.004
gi|7489001|pir||S14983  extensin class I (clone w10-1 L) - tomato  36.6    0.027
gi|30699212|ref|NP_849895.1|  ATEXT4 (extensin 4) [Arabidopsis th  35.4    0.060 
gi|18411288|ref|NP_565143.1|  ATEXT4 (extensin 4) [Arabidopsis th  35.4    0.060 
gi|116830905|gb|ABK28409.1|  unknown [Arabidopsis thaliana]        33.9    0.17 
gi|93007325|gb|ABE97166.1|  hypothetical protein At1g22120 [Arabi  33.9    0.17  
gi|87240545|gb|ABD32403.1|  DNA-binding WRKY [Medicago truncatula  32.7    0.39 
gi|92870540|gb|ABE79831.1|  Peptidase S41 [Medicago truncatula]    32.0    0.66 
gi|116059181|emb|CAL54888.1|  unnamed protein product [Ostreococc  31.6    0.87 
gi|15238363|ref|NP_201321.1|  unknown protein [Arabidopsis tha...  31.2    1.1   
gi|51535059|dbj|BAD37648.1|  hypothetical protein [Oryza sativa (  29.3    4.3  
gi|14573443|gb|AAK68067.1|  cycloidea-like protein A [Mimulus nas  28.5    7.3  
gi|24059993|dbj|BAC21455.1|  hypothetical protein [Oryza sativa (  28.5    7.3   
gi|15230230|ref|NP_191272.1|  BOP1; protein binding [Arabidops...  28.1    9.6

Alignments

 

>gi|1076557|pir||S54157  extensin-like protein - cowpea (fragment)
Length=279

 Score = 39.3 bits (90),  Expect = 0.004
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 14/61 (22%)
 Frame = +2

Query  131  INLHHHPLTTMYHHPHLIMSTSINLHH------PLITTLLLVTNTSHHLPLIXXXSINPH  292
            I+ HHH L     H HL+M TS +L H      P+ T+L L+    HHLP+     I+PH
Sbjct  44   ISRHHHHLL----HHHLLMFTSHHLLHLLPHHLPMFTSLHLLHLLPHHLPM----CISPH  95

Query  293  H  295
            H
Sbjct  96   H  96


 Score = 38.1 bits (87),  Expect = 0.009
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
 Frame = +2

Query  119  MPTSINLHHHPLTTMYHHPHLIMSTSINLHHPLITTL-LLVTNTSHHLPLIXXXSINPHH  295
            +P  I+ HHH L     H HL+M TS +L H L   L + ++   HHLP+    S +PHH
Sbjct  88   LPMCISPHHHHLL----HRHLLMFTSHHLLHLLPHHLHMCISRHHHHLPM----STSPHH  139


 Score = 35.0 bits (79),  Expect = 0.078
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 15/64 (23%)
 Frame = +2

Query  137  LHHHPLTTMYHHPHLI-----MSTSINLHH------PLITTLLLVTNTSHHLPLIXXXSI  283
            LHH  +   +HH HL+       TS +L H      P+ T+L L+    HHLP+     I
Sbjct  160  LHHLHMCISHHHHHLLHLRLPTFTSPHLLHLLPHHLPMFTSLHLLHLLPHHLPM----CI  215

Query  284  NPHH  295
            +PHH
Sbjct  216  SPHH  219


 Score = 33.5 bits (75),  Expect = 0.23
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = +2

Query  119  MPTSINLHHHPLTTMYHHPHLIMSTSINLHHPLITTLLLVTNTSHH--LPLIXXXSINPH  292
            +P  I+ HHH L     H HL+M TS +L H L   L +  +  HH  L      S +PH
Sbjct  211  LPMCISPHHHHLL----HHHLLMFTSHHLLHLLPHHLHMCISRHHHHLLHHHLLMSTSPH  266

Query  293  H  295
            H
Sbjct  267  H  267


 Score = 32.7 bits (73),  Expect = 0.39
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
 Frame = +2

Query  131  INLHHH--PLTTMYHHPHLI-----MSTSINLHHPLITTLLLVTNTSHH  256
            I+ HHH  P++T  HH HL+     MSTS  L H L+  L +  +  HH
Sbjct  124  ISRHHHHLPMSTSPHHHHLLHHHLPMSTSHPLLHLLLHHLHMCISHHHH  172


 Score = 31.6 bits (70),  Expect = 0.87
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
 Frame = +2

Query  140  HHHPLTTMYHHPHLIMSTSINLHH------PLITTLLLVTNTSHHLPLIXXXSINPHH  295
            HH  +    HH HL MSTS + HH      P+ T+  L+    HHL +     I+ HH
Sbjct  118  HHLHMCISRHHHHLPMSTSPHHHHLLHHHLPMSTSHPLLHLLLHHLHM----CISHHH  171


 Score = 31.6 bits (70),  Expect = 0.87
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 14/45 (31%)
 Frame = +2

Query  131  INLHHHPLTTMYHHPHLIMSTSINLHHPLITTLLLVTNTSHHLPL  265
            I+ HHH L     H HL+MSTS + HH L           HHLP+
Sbjct  247  ISRHHHHLL----HHHLLMSTSPHHHHLL----------HHHLPM  277


 Score = 31.2 bits (69),  Expect = 1.1
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
 Frame = +2

Query  137  LHHHPLTTMYHH------PHLIMSTSINLHHPLITTLLLVTNTSHH  256
            LHHH L    HH       HL M  S + HH L   LL+ T+  HH
Sbjct  223  LHHHLLMFTSHHLLHLLPHHLHMCISRHHHHLLHHHLLMSTSPHHH  268


>gi|7489001|pir||S14983  extensin class I (clone w10-1 L) - tomato (fragment)
Length=130

 Score = 36.6 bits (83),  Expect = 0.027
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = +2

Query  137  LHHHPLTTMYHHPHLIMSTSINLHHPLITTLLLVTNTSHH  256
            LHHH     +HHPHL  +T+ + HHP    L + T+  HH
Sbjct  53   LHHH-----HHHPHLHTTTNHHHHHPHHLHLPITTSLLHH  87


 Score = 32.0 bits (71),  Expect = 0.66
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query  143  HHPLTTMYHHPHLIMSTSINLHHPLITTLLLVTNTSHHLP  262
            HH    +YHH HL  STS+  HH     L   TN  HH P
Sbjct  36   HHHHQGIYHHRHL--STSLLHHHHHHPHLHTTTNHHHHHP  73


 Score = 30.4 bits (67),  Expect = 1.9
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
 Frame = +2

Query  125  TSINLHHHPLTTMYHHPHLIMSTSINLHHPLITTLLLVTNTS  250
            T+ + HHHP     HH HL ++TS+  HH  +   LL+  T+
Sbjct  65   TTNHHHHHP-----HHLHLPITTSLLHHHRHLLLYLLLQATT  101


>gi|30699212|ref|NP_849895.1|  ATEXT4 (extensin 4) [Arabidopsis thaliana]
Length=293

 Score = 35.4 bits (80),  Expect = 0.060
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = +2

Query  122  PTSINLHHHPLTTMYHHPHLIMSTSINLHHPLITTLLLVTNTSHHLP  262
            P+   LHHH  TT     HL+ S +   HH   T LL +  T HH P
Sbjct  161  PSYTTLHHHRFTT-----HLLQSYTTLHHHRFTTHLLQLYTTPHHHP  202


>gi|18411288|ref|NP_565143.1|  ATEXT4 (extensin 4) [Arabidopsis thaliana]
Length=256

 Score = 35.4 bits (80),  Expect = 0.060
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = +2

Query  122  PTSINLHHHPLTTMYHHPHLIMSTSINLHHPLITTLLLVTNTSHHLP  262
            P+   LHHH  TT     HL+ S +   HH   T LL +  T HH P
Sbjct  161  PSYTTLHHHRFTT-----HLLQSYTTLHHHRFTTHLLQLYTTPHHHP  202


>gi|116830905|gb|ABK28409.1|  unknown [Arabidopsis thaliana]
Length=438

 Score = 33.9 bits (76),  Expect = 0.17
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 0/48 (0%)
 Frame = +2

Query  122  PTSINLHHHPLTTMYHHPHLIMSTSINLHHPLITTLLLVTNTSHHLPL  265
            PT++NL HH L   + HP L      N    L+  ++ +  T H + L
Sbjct  163  PTNLNLIHHGLQDHHFHPSLYQKEQYNHTDSLLEQIMRIHETEHQMQL  210


>gi|93007325|gb|ABE97166.1|  hypothetical protein At1g22120 [Arabidopsis thaliana]
Length=437

 Score = 33.9 bits (76),  Expect = 0.17
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 0/48 (0%)
 Frame = +2

Query  122  PTSINLHHHPLTTMYHHPHLIMSTSINLHHPLITTLLLVTNTSHHLPL  265
            PT++NL HH L   + HP L      N    L+  ++ +  T H + L
Sbjct  163  PTNLNLIHHGLQDHHFHPSLYQKEQYNHTDSLLEQIMRIHETEHQMQL  210


>gi|87240545|gb|ABD32403.1|  DNA-binding WRKY [Medicago truncatula]
Length=605

 Score = 32.7 bits (73),  Expect = 0.39
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 12/47 (25%)
 Frame = +2

Query  122  PTSINLHHHPLTTMYHHPHLI---MSTSINLHHPLITTLLLVTNTSH  253
            P S+NLHHH +   Y  P L+   ++TS+N         LL TNTS+
Sbjct  111  PPSLNLHHHHINDHYTDPSLLEFKVNTSLN---------LLTTNTSN  148


>gi|92870540|gb|ABE79831.1|  Peptidase S41 [Medicago truncatula]
Length=450

 Score = 32.0 bits (71),  Expect = 0.66
 Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +2

Query  116  IMPTSINLHHHPLTTMYHHPHL-IMSTSINLHHPLITTLL  232
            ++P+S++     L+T +HH HL I+ T ++LH+ L+ T L
Sbjct  5    LIPSSLSTTPTALSTPHHHLHLPIIPTKLSLHNTLLATTL  44


>gi|116059181|emb|CAL54888.1|  unnamed protein product [Ostreococcus tauri]
Length=761

 Score = 31.6 bits (70),  Expect = 0.87
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
 Frame = -1

Query  291  WGFILXXXMRGRW*LVFVTRSRVVMRGWWRFILVDMMRWGW*YIVVRGWWWRFIL  127
            WGF++       W L     +   ++GW  +I V+   W W YI+ +  W+ FI+
Sbjct  17   WGFVI-------WALSAGVNAATEVKGWQAWITVN---WTWLYILTQDVWFIFII  61


>gi|15238363|ref|NP_201321.1|  unknown protein [Arabidopsis thaliana]
 gi|10178179|dbj|BAB11653.1|  unnamed protein product [Arabidopsis thaliana]
 gi|44917435|gb|AAS49042.1|  At5g65170 [Arabidopsis thaliana]
 gi|46931270|gb|AAT06439.1|  At5g65170 [Arabidopsis thaliana]
Length=362

 Score = 31.2 bits (69),  Expect = 1.1
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 0/40 (0%)
 Frame = +2

Query  116  IMPTSINLHHHPLTTMYHHPHLIMSTSINLHHPLITTLLL  235
            I P+++N H+ P ++ YHH H   +  +N++ P I+   L
Sbjct  210  ISPSTLNHHYLPPSSEYHHHHQHQNLLLNMNTPNISNPFL  249


>gi|51535059|dbj|BAD37648.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=202

 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query  119  MPTSINL--HHHPLTTMYHHPHLIMSTSINLHH  211
            MP  I +   HHP TT    P  + S+S+N HH
Sbjct  106  MPCRIRIVTPHHPRTTTASPPRRLFSSSLNRHH  138


>gi|14573443|gb|AAK68067.1|  cycloidea-like protein A [Mimulus nasutus]
Length=240

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 0/21 (0%)
 Frame = +2

Query  134  NLHHHPLTTMYHHPHLIMSTS  196
            N HHHP +T+   P+LI+S+S
Sbjct  206  NNHHHPPSTLGFQPNLILSSS  226


>gi|24059993|dbj|BAC21455.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=158

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 0/27 (0%)
 Frame = +2

Query  161  MYHHPHLIMSTSINLHHPLITTLLLVT  241
            ++HHP  +    + LHH L+  LLL++
Sbjct  47   LHHHPRHLRRCRLRLHHRLVALLLLLS  73


>gi|15230230|ref|NP_191272.1|  BOP1; protein binding [Arabidopsis thaliana]
 gi|6911883|emb|CAB72183.1|  putative protein [Arabidopsis thaliana]
 gi|67633706|gb|AAY78777.1|  ankyrin repeat family protein [Arabidopsis thaliana]
 gi|111074194|gb|ABH04470.1|  At3g57130 [Arabidopsis thaliana]
Length=467

 Score = 28.1 bits (61),  Expect = 9.6
 Identities = 9/17 (52%), Positives = 13/17 (76%), Gaps = 0/17 (0%)
 Frame = +2

Query  128  SINLHHHPLTTMYHHPH  178
            +++ HHH  +TMYHH H
Sbjct  448  NLHHHHHDPSTMYHHHH  464

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.317    0.128    0.392 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 135
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 312
Length of database: 101054579
Length adjustment: 73
Effective length of query: 239
Effective length of database: 80370102
Effective search space: 2491473162
Effective search space used: 2491473162
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)