RID=1168928151-5751-145640820679.BLASTQ4, Contig9

Alignments
 

>gi|77555320|gb|ABA98116.1|  retrotransposon protein, putative, Ty3-gypsy subclass [Oryza 
sativa (japonica cultivar-group)]
Length=640

 Score = 38.5 bits (88),  Expect = 0.015
 Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = -1

Query  293  ENSTGNRHSIHGG-STGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQGTHHTSRL  117
            E+S GN+  I       S S     GS  P + SQD H P       G+ R+   H  R 
Sbjct  207  ESSLGNKTMIAASVPANSASARTPTGSRVPHLRSQDYHQPSLSIAGAGSSRRSRRHDERE  266

Query  116  ERQPRPFSSH  87
             R  RP S H
Sbjct  267  RRVERPHSPH  276


>gi|15235180|ref|NP_195119.1|  copper ion binding / electron transporter [Arabidopsis thaliana]
 gi|3297817|emb|CAA19875.1|  putative protein [Arabidopsis thaliana]
 gi|7270342|emb|CAB80110.1|  putative protein [Arabidopsis thaliana]
Length=343

 Score = 37.7 bits (86),  Expect = 0.026
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = -1

Query  305  SHQGENSTGNRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQGTHHT  126
            +H G  STG+ HS     +G+ S H+G  S +    S  S+   S    H N   G++H+
Sbjct  117  THNGHTSTGSNHS-----SGNGSRHNGYSSGSNHSSSTGSNHSSSTGSTHNNHSSGSNHS  171

Query  125  SRLERQPRPFSS  90
            S L    +  SS
Sbjct  172  SILGSTHKNHSS  183


 Score = 36.6 bits (83),  Expect = 0.058
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
 Frame = -1

Query  314  GRGSHQGENSTGNRHSI-----HGGSTGSDSIHHGRGSHAPDI-------HSQDSHAPDS  171
            G GS     S+G+ HS      H  STGS   +H  GS+   I       HS  S+    
Sbjct  131  GNGSRHNGYSSGSNHSSSTGSNHSSSTGSTHNNHSSGSNHSSILGSTHKNHSSGSNHSSI  190

Query  170  QNRRHGNRRQGTHHTS  123
                H N   G++H+S
Sbjct  191  VGSTHNNHSSGSNHSS  206


 Score = 29.6 bits (65),  Expect = 7.1
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 0/64 (0%)
 Frame = -1

Query  314  GRGSHQGENSTGNRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQGT  135
            G GS  G N +    S H G +   +     GS      S  S+       RH     G+
Sbjct  84   GWGSSSGSNHSSGTGSTHNGHSSGSNHSSATGSTHNGHTSTGSNHSSGNGSRHNGYSSGS  143

Query  134  HHTS  123
            +H+S
Sbjct  144  NHSS  147


>gi|115477116|ref|NP_001062154.1|  Os08g0500200 [Oryza sativa (japonica cultivar-group)]
 gi|42407352|dbj|BAD08813.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113624123|dbj|BAF24068.1|  Os08g0500200 [Oryza sativa (japonica cultivar-group)]
Length=513

 Score = 37.4 bits (85),  Expect = 0.034
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
 Frame = -1

Query  311  RGSHQGENSTGNRHSIHGGSTGSDSIH----HGRGSHAPDIHSQDSHAPDSQNRRHG---  153
            RG H   +   + +  H  S   DS H    +GRG+   ++ S+     +SQ  R+G   
Sbjct  355  RGRHYTPSDHNSAYPKHDSS---DSRHRRPEYGRGNSTSELGSEGQRRQESQQGRNGPTF  411

Query  152  NRRQGTHHTSRLERQPR  102
            NRR+G  H S  ER+ R
Sbjct  412  NRRRGVQHMSEEEREAR  428


>gi|27461096|gb|AAL61539.1|  glycine-rich protein [Lilium hybrid cv. 'Star Gazer']
Length=138

 Score = 37.0 bits (84),  Expect = 0.045
 Identities = 13/17 (76%), Positives = 15/17 (88%), Gaps = 0/17 (0%)
 Frame = +2

Query  281  QCCSHPDEIPDPEYLPE  331
            +CC+HPDEIPDPEY  E
Sbjct  116  RCCAHPDEIPDPEYRAE  132


>gi|15235324|ref|NP_195156.1|  copper ion binding / electron transporter [Arabidopsis thaliana]
 gi|4455175|emb|CAB36707.1|  putative protein [Arabidopsis thaliana]
 gi|7270380|emb|CAB80147.1|  putative protein [Arabidopsis thaliana]
Length=313

 Score = 35.4 bits (80),  Expect = 0.13
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = -1

Query  314  GRGSHQGENSTGNRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQGT  135
            G GS  G N +    S H G +   +   G GS   + HS  S+   S    H N   G+
Sbjct  80   GWGSSSGSNHSSGTGSTHNGHSSGSNHSSGTGS-THNGHSSGSNHSSSTGSTHNNHSSGS  138

Query  134  HHTS  123
            +H+S
Sbjct  139  NHSS  142


>gi|115455351|ref|NP_001051276.1|  Os03g0749400 [Oryza sativa (japonica cultivar-group)]
 gi|113549747|dbj|BAF13190.1|  Os03g0749400 [Oryza sativa (japonica cultivar-group)]
Length=193

 Score = 34.3 bits (77),  Expect = 0.29
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
 Frame = -1

Query  305  SHQGENSTGNRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQGTHHT  126
            S QG   TG+    HGG+        GRG+ A           D+  RRH + ++G    
Sbjct  102  SSQGTRLTGHWPLGHGGAGRQQGSQAGRGARA-------GWRGDAAARRHSSSQRG----  150

Query  125  SRLERQPRPFSSHDGFphpapelppPRRQGELQPREHQTQ  6
            ++  RQ R  ++       AP   PPR+QG+ Q +E + Q
Sbjct  151  NKASRQQRRAATRQAASRTAPTRQPPRQQGKQQRQEARQQ  190


>gi|115446983|ref|NP_001047271.1|  Os02g0587000 [Oryza sativa (japonica cultivar-group)]
 gi|46806215|dbj|BAD17439.1|  putative glycine-rich protein [Oryza sativa (japonica cultivar-group)]
 gi|46806283|dbj|BAD17491.1|  putative glycine-rich protein [Oryza sativa (japonica cultivar-group)]
 gi|113536802|dbj|BAF09185.1|  Os02g0587000 [Oryza sativa (japonica cultivar-group)]
Length=120

 Score = 33.9 bits (76),  Expect = 0.38
 Identities = 12/18 (66%), Positives = 15/18 (83%), Gaps = 0/18 (0%)
 Frame = +2

Query  281  QCCSHPDEIPDPEYLPEV  334
            +CC+ PDEIP+P Y PEV
Sbjct  99   RCCASPDEIPEPMYRPEV  116


>gi|110288686|gb|AAP52380.2|  retrotransposon protein, putative, Ty3-gypsy subclass [Oryza 
sativa (japonica cultivar-group)]
Length=987

 Score = 33.1 bits (74),  Expect = 0.65
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
 Frame = -1

Query  320  IQGRGSHQGENSTGNRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQ  141
            +  R  ++G     +R        G D+  HGR  +  D    D H  +S  RR  +R  
Sbjct  402  VSSRRHNRGSRPNEDRDYDDRDRRGPDNTGHGRRRNDED--EGDRHRDNSDRRRQDSRDP  459

Query  140  GTHHTSRLERQPRPFSSHDGFphpapelppPRR  42
            G H  +R      P SS       +     PRR
Sbjct  460  GRHPRNRTPEPSDPSSSSSSSASSSSSDWHPRR  492


>gi|22711559|gb|AAM01165.2|AC113336_17  Hypothetical protein similar to putative retroelement [Oryza 
sativa (japonica cultivar-group)]
Length=1001

 Score = 33.1 bits (74),  Expect = 0.65
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
 Frame = -1

Query  320  IQGRGSHQGENSTGNRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQ  141
            +  R  ++G     +R        G D+  HGR  +  D    D H  +S  RR  +R  
Sbjct  402  VSSRRHNRGSRPNEDRDYDDRDRRGPDNTGHGRRRNDED--EGDRHRDNSDRRRQDSRDP  459

Query  140  GTHHTSRLERQPRPFSSHDGFphpapelppPRR  42
            G H  +R      P SS       +     PRR
Sbjct  460  GRHPRNRTPEPSDPSSSSSSSASSSSSDWHPRR  492


>gi|9957568|gb|AAG09424.1|AF180444_1  antimicrobial peptide shep-GRP [Capsella bursa-pastoris]
Length=120

 Score = 33.1 bits (74),  Expect = 0.65
 Identities = 21/77 (27%), Positives = 23/77 (29%), Gaps = 2/77 (2%)
 Frame = -1

Query  323  GIQGRGSHQGENSTGNR--HSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGN  150
            G  G G H G    G    H   GG  G D  H G G H    +    H         G 
Sbjct  42   GYGGHGGHGGHGGHGGHGGHGHGGGGHGLDGYHGGHGGHGGGYNGGGGHGGHGGGYNGGG  101

Query  149  RRQGTHHTSRLERQPRP  99
               G  H      Q +P
Sbjct  102  HHGGGGHGLNEPVQTQP  118


>gi|32274627|gb|AAO83659.1|  cation-efflux transporter [Brassica juncea]
Length=385

 Score = 32.7 bits (73),  Expect = 0.84
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
 Frame = -1

Query  305  SHQGENSTGNRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQGTH  132
            +H G   T   H  HG + G D  HH  G     +   D   PD + R+     QG +
Sbjct  195  NHGGVTVTTRHHHDHGHTHGEDKHHHAHGDVTEKL--LDKSKPDKEKRKRNINVQGAY  250


>gi|33146678|dbj|BAC80073.1|  putative RNA and export factor binding protein [Oryza sativa 
(japonica cultivar-group)]
Length=323

 Score = 32.7 bits (73),  Expect = 0.84
 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
 Frame = -1

Query  344  PSSAPQAGIQGRGSHQGENSTGNRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQN  165
            P+S P+ G Q    HQG    GN   I GG  G       +GS  P   SQ      SQ 
Sbjct  239  PNSVPRRGGQRGQFHQGNGRPGNSQGIGGGPRGF------QGSGRPGSGSQGG-GGCSQG  291

Query  164  RRHGNRR  144
            +  GN R
Sbjct  292  KTRGNER  298


>gi|3228262|emb|CAA12355.1|  hypothetical protein [Solanum tuberosum]
Length=208

 Score = 32.7 bits (73),  Expect = 0.84
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 21/88 (23%)
 Frame = -1

Query  338  SAPQAGIQGRGSH-QGENS----TGNRHSIHGGSTGSDSIH--------------HGRGS  216
            SA      G G+H +G+N+    T  +HS   GST ++  H              H  G 
Sbjct  122  SAGHGSTVGHGNHAKGQNTACHGTKTQHSASHGSTATNGNHAKGQITACHGAKTQHSTGH  181

Query  215  HAPDIHSQDSHAPDSQNRRHGNRRQGTH  132
             +P +H      P  Q   HG+RR+G H
Sbjct  182  GSPAMHGV--MVPQPQTVCHGSRRKGHH  207


>gi|108864539|gb|ABA94416.2|  retrotransposon protein, putative, Ty3-gypsy subclass [Oryza 
sativa (japonica cultivar-group)]
Length=1714

 Score = 32.3 bits (72),  Expect = 1.1
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 0/74 (0%)
 Frame = -1

Query  311  RGSHQGENSTGNRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQGTH  132
            RG+   E+   + H  H         + GRG H  +    D    +S  RR  +R  G H
Sbjct  317  RGNRSNEDRDQDNHHDHNDRERWVPDNTGRGRHHNNDDDGDRRRDNSGRRRQDSRDPGRH  376

Query  131  HTSRLERQPRPFSS  90
              +R+     P SS
Sbjct  377  PRNRMPEPSNPSSS  390


>gi|38344100|emb|CAD39396.2|  OSJNBb0089K24.6 [Oryza sativa (japonica cultivar-group)]
Length=1400

 Score = 32.0 bits (71),  Expect = 1.4
 Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 0/74 (0%)
 Frame = -1

Query  311  RGSHQGENSTGNRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQGTH  132
            RG    E+   + H  H         + GRG    D+   D    +S  RR  +R  G H
Sbjct  324  RGDRSNEDRDQDNHHDHNDRERRVPDNTGRGRRHNDVDDGDRRRDNSGRRRQDSRDPGRH  383

Query  131  HTSRLERQPRPFSS  90
              +R      P SS
Sbjct  384  PRNRTPEPSDPSSS  397


>gi|40253712|dbj|BAD05653.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=477

 Score = 31.6 bits (70),  Expect = 1.9
 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
 Frame = -1

Query  344  PSSAPQAGIQGRGSHQGENST-----GNRHSIH-------GGSTGSDSIHH-GRGSHAPD  204
            P+SA  A  +GRG   G+ ++     G  H+ H       GG+  +   HH GRG  +P 
Sbjct  75   PNSADHAASRGRGRRSGDATSASSRHGGGHADHAVRDVRRGGNVSTQQHHHRGRGQASP-  133

Query  203  IHSQDSHAPDSQNRRHGNRRQGTHHTSRLERQPRPFSSH  87
              S   HA      R G        + R+  Q   F+ H
Sbjct  134  --SSADHAASRGRGRCGG--DANSSSPRVAGQASRFADH  168


>gi|108862407|gb|ABA97278.2|  retrotransposon protein, putative, Ty1-copia subclass [Oryza 
sativa (japonica cultivar-group)]
Length=642

 Score = 31.2 bits (69),  Expect = 2.5
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -1

Query  293  ENSTG--NRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDS  171
            EN +G  N   +  GST SD   HG G HAP  HS     P S
Sbjct  170  ENPSGAENHSDLAPGST-SDDAQHGSGGHAPADHSLGDTCPPS  211


>gi|77549440|gb|ABA92237.1|  retrotransposon protein, putative, Ty3-gypsy subclass [Oryza 
sativa (japonica cultivar-group)]
Length=1646

 Score = 31.2 bits (69),  Expect = 2.5
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 0/47 (0%)
 Frame = -1

Query  245  SDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQGTHHTSRLERQP  105
            S+S+    GS  P + SQD H P       G+ R+   H  R    P
Sbjct  329  SESVRTPTGSRVPHLRSQDYHQPSLSIAGAGSNRRSRGHNERSVHSP  375


>gi|50511475|gb|AAT77397.1|  putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length=1194

 Score = 30.8 bits (68),  Expect = 3.2
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
 Frame = -1

Query  317  QGRGSHQGENSTGNRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQG  138
            + RG+   E+     H  H         + G G    D    D H  +S  RR  +R  G
Sbjct  347  RNRGNRSNEDRDHGNHHDHNDRERRGPDNTGHGRRRIDDDDGDRHRDNSARRRQDSRDPG  406

Query  137  THHTSRLERQPRPFSSHD  84
             H   R  R PR   +HD
Sbjct  407  RH--PRNHRHPR--RTHD  420


>gi|22325475|ref|NP_178539.2|  cation transporter/ efflux permease [Arabidopsis thaliana]
Length=798

 Score = 30.8 bits (68),  Expect = 3.2
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -1

Query  272  HSIHGGSTGSDSIHHGRGSHAPDIHSQ--DSHAPDSQNRRHGNRRQGTHH  129
            H  HGGS  + S  H   SH  + H Q  DSH  +  ++   + +   HH
Sbjct  546  HHAHGGSGCTHSHSHQSHSHKNEEHHQHSDSHKHEEHHQHSDSHKHEEHH  595


>gi|54291260|dbj|BAD62012.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=138

 Score = 30.8 bits (68),  Expect = 3.2
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = -1

Query  323  GIQGRGSHQGENSTGNRHSIHGGSTG---SDSIHHGRGSHAPDIHSQDSHAPDSQNRRHG  153
            G +G+   +GE +  +  ++ GG+ G           G+H   +H   +  P  + R HG
Sbjct  30   GAEGQAGARGEAAARDEGAVDGGARGWAVGSGARRCLGAHP--VHDGGAAGPRRRRRGHG  87

Query  152  NRRQG  138
             RR+G
Sbjct  88   RRRRG  92


>gi|40538890|gb|AAR87147.1|  putative polyprotein [Oryza sativa (japonica cultivar-group)]
 gi|50838974|gb|AAT81735.1|  RNase H domain containing protein [Oryza sativa (japonica cultivar-group)]
 gi|108708966|gb|ABF96761.1|  retrotransposon protein, putative, Ty3-gypsy subclass [Oryza 
sativa (japonica cultivar-group)]
Length=1227

 Score = 30.4 bits (67),  Expect = 4.2
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 0/47 (0%)
 Frame = -1

Query  245  SDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQGTHHTSRLERQP  105
            S S+    GS  P + SQD H P       G+ R+   H  R  ++P
Sbjct  329  SASVRTPTGSRVPPLRSQDYHQPSFSVVGAGSSRRSRDHGERCSKKP  375


>gi|115440637|ref|NP_001044598.1|  Os01g0813100 [Oryza sativa (japonica cultivar-group)]
 gi|55297501|dbj|BAD68217.1|  putative bZIP protein DPBF3 [Oryza sativa (japonica cultivar-group)]
 gi|56785040|dbj|BAD82679.1|  putative bZIP protein DPBF3 [Oryza sativa (japonica cultivar-group)]
 gi|113534129|dbj|BAF06512.1|  Os01g0813100 [Oryza sativa (japonica cultivar-group)]
Length=366

 Score = 30.4 bits (67),  Expect = 4.2
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = -1

Query  329  QAGIQGRGSHQGENSTGNRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGN  150
            +AG+  +GS +  +  GN   +  G T + ++    GSH  + + Q   + D+ +  HG 
Sbjct  143  KAGVVTQGSLKELSDVGNVDPVGRGVTATGTVDLAPGSHWIEQYKQQIASTDAHH--HGQ  200

Query  149  RR-QGTHHTSRLERQP  105
            +  QG +  +RL  QP
Sbjct  201  QGVQGAYFPNRLVPQP  216


>gi|50252989|dbj|BAD29240.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=490

 Score = 30.4 bits (67),  Expect = 4.2
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = -1

Query  314  GRGSHQGENSTGNRHSIHGGST--GSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQ  141
            G G         +R +  GG    G  ++  GRG +  D+    +HA   +    G RR+
Sbjct  314  GLGDGDRARERRDRPATWGGEVELGMATVFAGRGGNGADVGGDRAHACAGEGTARGRRRR  373

Query  140  GTH  132
            G H
Sbjct  374  GEH  376


>gi|20161468|dbj|BAB90392.1|  putative promoter-binding factor-like protein [Oryza sativa (japonica 
cultivar-group)]
Length=310

 Score = 30.4 bits (67),  Expect = 4.2
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = -1

Query  329  QAGIQGRGSHQGENSTGNRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGN  150
            +AG+  +GS +  +  GN   +  G T + ++    GSH  + + Q   + D+ +  HG 
Sbjct  143  KAGVVTQGSLKELSDVGNVDPVGRGVTATGTVDLAPGSHWIEQYKQQIASTDAHH--HGQ  200

Query  149  RR-QGTHHTSRLERQP  105
            +  QG +  +RL  QP
Sbjct  201  QGVQGAYFPNRLVPQP  216


>gi|728596|emb|CAA88559.1|  glycine rich protein [Hordeum vulgare subsp. vulgare]
Length=64

 Score = 30.4 bits (67),  Expect = 4.2
 Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 0/20 (0%)
 Frame = +2

Query  281  QCCSHPDEIPDPEYLPEVQN  340
            +CC+  DE+P+P Y  EV+N
Sbjct  45   RCCARADEVPEPMYRAEVRN  64


>gi|115434224|ref|NP_001041870.1|  Os01g0120700 [Oryza sativa (japonica cultivar-group)]
 gi|11034640|dbj|BAB17164.1|  putative histidine-rich Ca2+-binding protein [Oryza sativa (japonica 
cultivar-group)]
 gi|12697612|dbj|BAB07941.2|  putative histidine-rich Ca2+-binding protein [Oryza sativa (japonica 
cultivar-group)]
 gi|113531401|dbj|BAF03784.1|  Os01g0120700 [Oryza sativa (japonica cultivar-group)]
Length=285

 Score = 30.4 bits (67),  Expect = 4.2
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
 Frame = -1

Query  275  RHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPD-------SQNRR--HGNRRQGTHHTS  123
            RH  HG S   ++  H R S      S D    D        +NRR    +RR+   H+S
Sbjct  83   RHRKHGHSDSDEAKRHKRRSKRRSSDSSDDTDSDEYDSGSEEENRRKKRSHRRKHRRHSS  142

Query  122  RLERQPRPFSSHD  84
            R +     +SS D
Sbjct  143  RSDSDASDYSSDD  155


>gi|115489128|ref|NP_001067051.1|  Os12g0566200 [Oryza sativa (japonica cultivar-group)]
 gi|113649558|dbj|BAF30070.1|  Os12g0566200 [Oryza sativa (japonica cultivar-group)]
Length=223

 Score = 30.0 bits (66),  Expect = 5.5
 Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 7/104 (6%)
 Frame = -1

Query  404  TIPNTKQHT*RPLTCMQ*SLPSSAPQAGIQGRGSHQGENSTGNRHSIHGGSTGSDSIHH-  228
            T+P  + H  +P T  Q    S    A      S   ++S+ N  + + G    +  H  
Sbjct  29   TVPQPRSHW-KPKTIPQSQGNSHGNNAKDGHVDSATPQDSSNNNLAENIGWNDENHAHSE  87

Query  227  ---GRGSHAPDIHSQDSH--APDSQNRRHGNRRQGTHHTSRLER  111
               G   H  D    +SH  A   Q   H  RRQG H+  R  R
Sbjct  88   EVKGEKRHVDDYQKSESHENAEQQQQLSHAPRRQGHHNGGRYHR  131


>gi|108862846|gb|ABA98985.2|  expressed protein [Oryza sativa (japonica cultivar-group)]
Length=1471

 Score = 30.0 bits (66),  Expect = 5.5
 Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 7/104 (6%)
 Frame = -1

Query  404   TIPNTKQHT*RPLTCMQ*SLPSSAPQAGIQGRGSHQGENSTGNRHSIHGGSTGSDSIHH-  228
             T+P  + H  +P T  Q    S    A      S   ++S+ N  + + G    +  H  
Sbjct  1277  TVPQPRSHW-KPKTIPQSQGNSHGNNAKDGHVDSATPQDSSNNNLAENIGWNDENHAHSE  1335

Query  227   ---GRGSHAPDIHSQDSH--APDSQNRRHGNRRQGTHHTSRLER  111
                G   H  D    +SH  A   Q   H  RRQG H+  R  R
Sbjct  1336  EVKGEKRHVDDYQKSESHENAEQQQQLSHAPRRQGHHNGGRYHR  1379


>gi|58531958|emb|CAE03068.2|  OSJNBa0089E12.6 [Oryza sativa (japonica cultivar-group)]
Length=1939

 Score = 30.0 bits (66),  Expect = 5.5
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 0/47 (0%)
 Frame = -1

Query  245  SDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQGTHHTSRLERQP  105
            S+SIH   GS  P   SQD   P       G+ R+   H  R    P
Sbjct  327  SESIHTPTGSRVPHFRSQDYRHPSLSITGAGSNRRSRGHDERSVHSP  373


>gi|54291863|gb|AAV32231.1|  putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length=3092

 Score = 30.0 bits (66),  Expect = 5.5
 Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 0/74 (0%)
 Frame = -1

Query  311   RGSHQGENSTGNRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQGTH  132
             RG    E+   + H  H         + GRG    D    D    +S  RR  +R  G H
Sbjct  1606  RGDRSNEDRDQDNHHDHNDRERRVPDNIGRGRRHNDDDDGDRRRDNSGRRRQDSRDPGRH  1665

Query  131   HTSRLERQPRPFSS  90
               +R      P SS
Sbjct  1666  PRNRTPEPSDPLSS  1679


>gi|52353739|gb|AAU44305.1|  putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length=912

 Score = 30.0 bits (66),  Expect = 5.5
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 0/47 (0%)
 Frame = -1

Query  245  SDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQGTHHTSRLERQP  105
            S S+    GS  P + SQD H P       G+ R+   H  R    P
Sbjct  153  SSSVRTRTGSRVPPLRSQDYHQPSLSVASTGSSRRSRDHGERSVHSP  199


>gi|3036813|emb|CAA18503.1|  hypothetical protein [Arabidopsis thaliana]
 gi|7270561|emb|CAB81518.1|  hypothetical protein [Arabidopsis thaliana]
Length=505

 Score = 30.0 bits (66),  Expect = 5.5
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = -1

Query  284  TGNRHSI-HGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQGTHHTSRLERQ  108
            + +R SI   GS  ++   HG GS      S+D H+   +    G RR+ + HT     +
Sbjct  439  SSSRSSIDQNGSNHNNRTAHGGGSKYR--RSRDYHSESRERSSSGQRRETSRHTPNRSYR  496

Query  107  PRPFSS  90
            P+  SS
Sbjct  497  PKVTSS  502


>gi|77555304|gb|ABA98100.1|  hypothetical protein LOC_Os12g26680 [Oryza sativa (japonica cultivar-group)]
Length=113

 Score = 30.0 bits (66),  Expect = 5.5
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -1

Query  296  GENSTGNRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQ  141
            G  S G R +   G  G D    G+GS    IH ++ H P+ + R  G   Q
Sbjct  36   GGGSVGGRGARGDGDGGWDESGGGKGSRRC-IHGREGHGPEGRKRGEGRELQ  86


>gi|79326344|ref|NP_001031794.1|  unknown protein [Arabidopsis thaliana]
 gi|55819794|gb|AAV66092.1|  At4g36090 [Arabidopsis thaliana]
 gi|59958356|gb|AAX12888.1|  At4g36090 [Arabidopsis thaliana]
Length=520

 Score = 30.0 bits (66),  Expect = 5.5
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = -1

Query  284  TGNRHSI-HGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQGTHHTSRLERQ  108
            + +R SI   GS  ++   HG GS      S+D H+   +    G RR+ + HT     +
Sbjct  454  SSSRSSIDQNGSNHNNRTAHGGGSKYR--RSRDYHSESRERSSSGQRRETSRHTPNRSYR  511

Query  107  PRPFSS  90
            P+  SS
Sbjct  512  PKVTSS  517


>gi|79326336|ref|NP_001031793.1|  unknown protein [Arabidopsis thaliana]
 gi|51971445|dbj|BAD44387.1|  hypothetical protein [Arabidopsis thaliana]
Length=452

 Score = 30.0 bits (66),  Expect = 5.5
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = -1

Query  284  TGNRHSI-HGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQGTHHTSRLERQ  108
            + +R SI   GS  ++   HG GS      S+D H+   +    G RR+ + HT     +
Sbjct  386  SSSRSSIDQNGSNHNNRTAHGGGSKYR--RSRDYHSESRERSSSGQRRETSRHTPNRSYR  443

Query  107  PRPFSS  90
            P+  SS
Sbjct  444  PKVTSS  449


>gi|115446981|ref|NP_001047270.1|  Os02g0586900 [Oryza sativa (japonica cultivar-group)]
 gi|46806213|dbj|BAD17437.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|46806281|dbj|BAD17489.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113536801|dbj|BAF09184.1|  Os02g0586900 [Oryza sativa (japonica cultivar-group)]
Length=104

 Score = 30.0 bits (66),  Expect = 5.5
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 0/20 (0%)
 Frame = +2

Query  281  QCCSHPDEIPDPEYLPEVQN  340
            +CC+  DE PDP Y PE  N
Sbjct  85   RCCATADEKPDPMYRPEAHN  104


>gi|108862353|gb|ABA96797.2|  transposon protein, putative, Mutator sub-class, expressed [Oryza 
sativa (japonica cultivar-group)]
Length=478

 Score = 29.6 bits (65),  Expect = 7.1
 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 22/75 (29%)
 Frame = -1

Query  317  QGRGSHQGENSTGNRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQG  138
            +GRG HQ  N+  N  + H G       HH    HA + H Q            G  R G
Sbjct  378  RGRGYHQHNNNHFNNQNYHNGQ------HHNH--HANNHHHQ------------GGNRGG  417

Query  137  THH--TSRLERQPRP  99
             HH  T   ++Q +P
Sbjct  418  AHHVGTPPNQQQTKP  432


>gi|108710148|gb|ABF97943.1|  retrotransposon protein, putative, Ty3-gypsy subclass [Oryza 
sativa (japonica cultivar-group)]
Length=1202

 Score = 29.6 bits (65),  Expect = 7.1
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -1

Query  278  NRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQ  168
            N  + H GS+GS   HHG+G H   + S+   AP  Q
Sbjct  589  NASNFHPGSSGS---HHGQGQHNRGVASRPPMAPVQQ  622


>gi|108706889|gb|ABF94684.1|  expressed protein [Oryza sativa (japonica cultivar-group)]
Length=454

 Score = 29.6 bits (65),  Expect = 7.1
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = -1

Query  284  TGNRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQGTHHTSRLERQP  105
            TG+ H + G S+G           APD   ++S AP S +  H + + G  +   LE   
Sbjct  192  TGSYHRVQGSSSGCVEGSKALSVEAPDCKVEES-APGSWHNAHASIKGGKGNKHELEETS  250

Query  104  RPFSSHD  84
              F   D
Sbjct  251  AGFPPDD  257


>gi|54287555|gb|AAV31299.1|  putative polyprotein [Oryza sativa (japonica cultivar-group)]
 gi|54291738|gb|AAV32107.1|  putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length=1857

 Score = 29.6 bits (65),  Expect = 7.1
 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
 Frame = -1

Query  221  GSHAPDIHSQDSHAPDSQNRRHGNRRQGTHHTSRLERQP----------RPFSSH  87
            GS  P + SQD H P       G+ R+   H  R  R P          RP S H
Sbjct  324  GSRVPHLRSQDYHQPSLSIAGAGSSRRSRGHDERSVRSPPERHRERRVERPHSPH  378


>gi|46485805|gb|AAS98430.1|  putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length=2004

 Score = 29.6 bits (65),  Expect = 7.1
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 0/47 (0%)
 Frame = -1

Query  245  SDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQGTHHTSRLERQP  105
            S+S+H   GS  P   SQD   P       G+ R+   H  R    P
Sbjct  327  SESVHTPTGSRVPHFRSQDYRHPSLSITGAGSNRRSRGHDERSVHSP  373


>gi|29244623|gb|AAO73216.1|  retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza 
sativa (japonica cultivar-group)]
 gi|31712104|gb|AAP68408.1|  putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length=1185

 Score = 29.6 bits (65),  Expect = 7.1
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -1

Query  278  NRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQ  168
            N  + H GS+GS   HHG+G H   + S+   AP  Q
Sbjct  589  NASNFHPGSSGS---HHGQGQHNRGVASRPPMAPVQQ  622


>gi|46391119|gb|AAS90646.1|  putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length=1991

 Score = 29.6 bits (65),  Expect = 7.1
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 0/47 (0%)
 Frame = -1

Query  245  SDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQGTHHTSRLERQP  105
            S+S+H   GS  P   SQD   P       G+ R+   H  R    P
Sbjct  327  SESVHTPTGSRVPHFRSQDYRHPSLSITGAGSNRRSRGHDERSVHSP  373


>gi|77555417|gb|ABA98213.1|  retrotransposon protein, putative, Ty3-gypsy subclass [Oryza 
sativa (japonica cultivar-group)]
Length=1964

 Score = 29.6 bits (65),  Expect = 7.1
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 0/47 (0%)
 Frame = -1

Query  245  SDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQGTHHTSRLERQP  105
            S+S+H   GS  P   SQD   P       G+ R+   H  R    P
Sbjct  322  SESVHTPTGSRVPHFRSQDYRHPSLSITGAGSNRRSRGHDERSVHSP  368


>gi|108862354|gb|ABG21923.1|  transposon protein, putative, Mutator sub-class, expressed [Oryza 
sativa (japonica cultivar-group)]
Length=274

 Score = 29.6 bits (65),  Expect = 7.1
 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 22/75 (29%)
 Frame = -1

Query  317  QGRGSHQGENSTGNRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRHGNRRQG  138
            +GRG HQ  N+  N  + H G       HH    HA + H Q            G  R G
Sbjct  174  RGRGYHQHNNNHFNNQNYHNGQ------HHNH--HANNHHHQ------------GGNRGG  213

Query  137  THH--TSRLERQPRP  99
             HH  T   ++Q +P
Sbjct  214  AHHVGTPPNQQQTKP  228


>gi|18481700|gb|AAL73522.1|AF466200_1  putative non-LTR retroelement reverse transcriptase [Sorghum 
bicolor]
Length=292

 Score = 29.6 bits (65),  Expect = 7.1
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 0/22 (0%)
 Frame = +1

Query  187  LSWLWISGAWLPRPWWILSLPV  252
            L WLW S    PRPW  L +PV
Sbjct  135  LRWLWFSWDTKPRPWEGLQIPV  156


>gi|55295855|dbj|BAD67723.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=151

 Score = 29.6 bits (65),  Expect = 7.1
 Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 22/104 (21%)
 Frame = -1

Query  335  APQAGIQGRGSHQGENSTGNRHSIHGGSTGSDSIHHGRGSHAPDIHSQDSHAPDSQNRRH  156
            AP+A  QG GS       G RH+ HG S  +    HG  + A  +   D        RR 
Sbjct  3    APRAVAQGGGS-------GRRHARHGSSRPAS---HGAAAAARAVTGGD--------RRR  44

Query  155  GNRRQGTHHTSRLERQPRPFSSHDGFphpapelppPRRQGELQP  24
            G RR+      R  RQP+  ++H             RR+G+  P
Sbjct  45   GRRRRPAR---RRRRQPKT-TAHVRRAAALTGERKGRRKGDSSP  84


>gi|46806214|dbj|BAD17438.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|46806282|dbj|BAD17490.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
Length=91

 Score = 29.6 bits (65),  Expect = 7.1
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 0/19 (0%)
 Frame = +2

Query  284  CCSHPDEIPDPEYLPEVQN  340
            CC+  DE PDP Y PE  N
Sbjct  73   CCATADEKPDPMYRPEAHN  91


>gi|45735937|dbj|BAD12968.1|  hydroxycinnamoyl transferase-like [Oryza sativa (japonica cultivar-group)]
 gi|45735951|dbj|BAD12981.1|  hydroxycinnamoyl transferase-like [Oryza sativa (japonica cultivar-group)]
Length=158

 Score = 29.6 bits (65),  Expect = 7.1
 Identities = 21/54 (38%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
 Frame = -1

Query  236  IHH-GRGSHAPDIHSQDSHAPDSQNRRHGNRRQGTHHTSRLERQPRPFSSHDGF  78
            IHH  RG H      Q         R H N  QG HH  RL R  RP    D F
Sbjct  30   IHHLRRGDHIAGTRRQ------RDCRHHHNHHQGPHHRQRLHRM-RPLVLRDYF  76
Distribution of 67 Blast Hits on the Query Sequence
