RID=1168937330-2719-212018759271.BLASTQ1, Contig100

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168937330-2719-212018759271.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig100
Length=296

Distribution of 17 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|92871203|gb|ABE80288.1|  Prefoldin; tRNA-binding arm; t-sna...  56.2    3e-08
gi|15218702|ref|NP_171807.1|  unknown protein [Arabidopsis tha...  42.7    1e-04 
gi|33327270|gb|AAQ08991.1|  centromere protein [Phaseolus vulgari  39.3    0.004
gi|15235468|ref|NP_192180.1|  unknown protein [Arabidopsis tha...  35.8    0.047 
gi|18400709|ref|NP_566505.1|  unknown protein [Arabidopsis tha...  32.0    0.68  
gi|31432384|gb|AAP54021.1|  transposon protein, putative, Pong...  30.0    2.6   
gi|87240464|gb|ABD32322.1|  Bromodomain; WD40-like [Medicago trun  29.6    3.4  
gi|92874737|gb|ABE82954.1|  Prefoldin [Medicago truncatula] >g...  28.9    5.7  
gi|115483456|ref|NP_001065398.1|  Os10g0563100 [Oryza sativa (...  28.9    5.7   
gi|116000631|emb|CAL50311.1|  Cdc4 and related F-box and WD-40...  28.1    9.8  
gi|13603721|gb|AAK31908.1|AF247809_1  putative chromatin remod...  28.1    9.8   
gi|30683830|ref|NP_850116.1|  SYD (SPLAYED) [Arabidopsis thaliana  28.1    9.8   
gi|30683833|ref|NP_850117.1|  SYD (SPLAYED) [Arabidopsis thaliana  28.1    9.8   
gi|20197603|gb|AAD29835.2|  putative SNF2 subfamily transcript...  28.1    9.8  
gi|60499608|gb|AAX22009.1|  SPLAYED splice variant [Arabidopsis t  28.1    9.8   
gi|25407974|pir||B84683  hypothetical protein At2g28300 [impor...  28.1    9.8

Alignments

 

>gi|92871203|gb|ABE80288.1|  Prefoldin; tRNA-binding arm; t-snare; Protein kinase PKN/PRK1, 
effector [Medicago truncatula]
Length=1796

 Score = 56.2 bits (134),  Expect = 3e-08
 Identities = 45/89 (50%), Positives = 62/89 (69%), Gaps = 1/89 (1%)
 Frame = +2

Query  11    EQLEEAEEAIMKLFDVNRKLMTHVEDGSWSPDGKSALESDESGSVrrrraseqarrgseK  190
             EQLE ++E +MKLFD NRKL+ +VE+G+ S  G+++ ESDE GSV RRR SEQA+RGSEK
Sbjct  1667  EQLEASQETVMKLFDANRKLVKNVEEGALSSAGRASSESDEIGSVSRRRFSEQAQRGSEK  1726

Query  191   MWALAA*RCRKYSFSC*SLMMKKKAKERT  277
             +  L     ++  F    L   K++KE+T
Sbjct  1727  IGQLQL-EVQRLQFLLLKLNDAKESKEKT  1754


>gi|15218702|ref|NP_171807.1|  unknown protein [Arabidopsis thaliana]
 gi|4587570|gb|AAD25801.1|AC006550_9  Strong similarity to gi|2244833 centromere protein homolog from 
Arabidopsis thaliana chromosome 4 contig gb|Z97337.  ESTs 
gb|T20765 and gb|AA586277 come from this gene
Length=1744

 Score = 42.7 bits (99),  Expect(2) = 1e-04
 Identities = 22/44 (50%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
 Frame = +2

Query  14    QLEEAEEAIMKLFDVNRKLMTHVEDGSWSPDG-KSALESDESGS  142
             Q+ EAEEA+ KL  +NRKL+T V++G    DG KS+++ DE+ S
Sbjct  1614  QINEAEEALEKLLSINRKLVTKVQNGFERSDGSKSSMDLDENES  1657


 Score = 20.8 bits (42),  Expect(2) = 1e-04
 Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 0/24 (0%)
 Frame = +1

Query  160   IRTSSKRV*KDVGACSLEVQKIQF  231
             I   ++R  + +G   LE+Q++QF
Sbjct  1663  ISEQARRGSEKIGRLQLEIQRLQF  1686


>gi|33327270|gb|AAQ08991.1|  centromere protein [Phaseolus vulgaris]
Length=80

 Score = 39.3 bits (90),  Expect = 0.004
 Identities = 18/29 (62%), Positives = 23/29 (79%), Gaps = 0/29 (0%)
 Frame = +2

Query  14  QLEEAEEAIMKLFDVNRKLMTHVEDGSWS  100
           QLE ++E I KLFD NRKLM +VE+G+ S
Sbjct  50  QLEASQETITKLFDANRKLMKNVEEGTLS  78


>gi|15235468|ref|NP_192180.1|  unknown protein [Arabidopsis thaliana]
 gi|3892059|gb|AAC78272.1|  predicted protein of unknown function [Arabidopsis thaliana]
 gi|7269756|emb|CAB77756.1|  predicted protein of unknown function [Arabidopsis thaliana]
Length=1111

 Score = 35.8 bits (81),  Expect = 0.047
 Identities = 18/24 (75%), Positives = 18/24 (75%), Gaps = 0/24 (0%)
 Frame = +2

Query  14    QLEEAEEAIMKLFDVNRKLMTHVE  85
             QLEE EEAI KLF VNRKL T  E
Sbjct  997   QLEEGEEAIEKLFTVNRKLTTKAE  1020


>gi|18400709|ref|NP_566505.1|  unknown protein [Arabidopsis thaliana]
 gi|9294258|dbj|BAB02160.1|  unnamed protein product [Arabidopsis thaliana]
 gi|15292885|gb|AAK92813.1|  unknown protein [Arabidopsis thaliana]
 gi|21280913|gb|AAM45005.1|  unknown protein [Arabidopsis thaliana]
Length=415

 Score = 32.0 bits (71),  Expect = 0.68
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -3

Query  285  RFMVLSFAFFFII-KLQQEKLYFLHL*AASAHIFSDPLRACSDALRLLTLPLSSDSNADF  109
            RF +    F  I+ +L  E ++F H   A+      P++ C+ A+RLL    +SD+  ++
Sbjct  78   RFRMKKPLFLRIVDRLSSELMFFQHRRDATGRFGHSPIQKCTAAIRLLAYGYASDAVDEY  137

Query  108  PSGDQEPSSTCVIN  67
                +  + +C+ N
Sbjct  138  LRMGETTAMSCLEN  151


>gi|31432384|gb|AAP54021.1|  transposon protein, putative, Pong sub-class [Oryza sativa (japonica 
cultivar-group)]
Length=308

 Score = 30.0 bits (66),  Expect = 2.6
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -3

Query  285  RFMVLSFAFFFII-KLQQEKLYFLHL*AASAHIFSDPLRACSDALRLLTLPLSSDSNADF  109
            RF +    F  I+ +L +   YF H    +  +   PL+ C+ A+R+L    ++D+  ++
Sbjct  87   RFRMRRHVFLHIVDELGKWSSYFTHRINCTGRLGHSPLQKCTAAIRMLAYGTAADTLDEY  146

Query  108  PSGDQEPSSTCVIN  67
                Q  +  C+ N
Sbjct  147  LKVPQSTALECLEN  160


>gi|87240464|gb|ABD32322.1|  Bromodomain; WD40-like [Medicago truncatula]
Length=1304

 Score = 29.6 bits (65),  Expect = 3.4
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
 Frame = +2

Query  41   MKLFDVNRKLMTHVEDGSWSPDGKSALESDESGSV  145
            +++F+++R  M    DG +SPDG S + SD++G +
Sbjct  193  IRIFEISRFKMV---DGKFSPDGTSIILSDDAGQL  224


>gi|92874737|gb|ABE82954.1|  Prefoldin [Medicago truncatula]
 gi|92886890|gb|ABE88525.1|  Prefoldin [Medicago truncatula]
Length=1662

 Score = 28.9 bits (63),  Expect = 5.7
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 0/30 (0%)
 Frame = +2

Query  17    LEEAEEAIMKLFDVNRKLMTHVEDGSWSPD  106
             +EE EEA+M+   +N ++  +VE+G+ S D
Sbjct  1568  IEEVEEAVMQQVSINDQMAKNVEEGASSLD  1597


>gi|115483456|ref|NP_001065398.1|  Os10g0563100 [Oryza sativa (japonica cultivar-group)]
 gi|12597879|gb|AAG60187.1|AC084763_7  hypothetical protein [Oryza sativa]
 gi|31433534|gb|AAP55032.1|  transposon protein, putative, Pong sub-class [Oryza sativa (japonica 
cultivar-group)]
 gi|113639930|dbj|BAF27235.1|  Os10g0563100 [Oryza sativa (japonica cultivar-group)]
Length=513

 Score = 28.9 bits (63),  Expect = 5.7
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -3

Query  285  RFMVLSFAFFFII-KLQQEKLYFLHL*AASAHIFSDPLRACSDALRLLTLPLSSDSNADF  109
            RF +    F  I+ +L +   YF H    +  +   PL+ C+ A+R+L    ++D+  ++
Sbjct  87   RFRMRRHVFLHIVDELGKWSSYFTHRVDCTGCLGHSPLQKCTAAIRMLAYGTAADTLDEY  146

Query  108  PSGDQEPSSTCVIN  67
                Q  +  C+ N
Sbjct  147  LKVPQSTALECLEN  160


>gi|116000631|emb|CAL50311.1|  Cdc4 and related F-box and WD-40 proteins (ISS) [Ostreococcus 
tauri]
Length=775

 Score = 28.1 bits (61),  Expect = 9.8
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
 Frame = +2

Query  29   EEAIMKLFD---VNRKLMTHVEDGSWSPDGKSALESDESG  139
            E   +++FD    N KL+    DG+W PDG S + SD +G
Sbjct  90   EGVALRVFDGSHYNSKLV----DGNWHPDGTSIVVSDLAG  125


>gi|13603721|gb|AAK31908.1|AF247809_1  putative chromatin remodeling protein SYD [Arabidopsis thaliana]
Length=3574

 Score = 28.1 bits (61),  Expect = 9.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 0/29 (0%)
 Frame = -3

Query  165   SDALRLLTLPLSSDSNADFPSGDQEPSST  79
             S+   L TLPL+ + NAD    + EPSS+
Sbjct  3174  SEGTELATLPLTEEENADSQLANIEPSSS  3202


>gi|30683830|ref|NP_850116.1|  SYD (SPLAYED) [Arabidopsis thaliana]
Length=3574

 Score = 28.1 bits (61),  Expect = 9.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 0/29 (0%)
 Frame = -3

Query  165   SDALRLLTLPLSSDSNADFPSGDQEPSST  79
             S+   L TLPL+ + NAD    + EPSS+
Sbjct  3174  SEGTELATLPLTEEENADSQLANIEPSSS  3202


>gi|30683833|ref|NP_850117.1|  SYD (SPLAYED) [Arabidopsis thaliana]
Length=3529

 Score = 28.1 bits (61),  Expect = 9.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 0/29 (0%)
 Frame = -3

Query  165   SDALRLLTLPLSSDSNADFPSGDQEPSST  79
             S+   L TLPL+ + NAD    + EPSS+
Sbjct  3174  SEGTELATLPLTEEENADSQLANIEPSSS  3202


>gi|20197603|gb|AAD29835.2|  putative SNF2 subfamily transcription regulator [Arabidopsis 
thaliana]
Length=3571

 Score = 28.1 bits (61),  Expect = 9.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 0/29 (0%)
 Frame = -3

Query  165   SDALRLLTLPLSSDSNADFPSGDQEPSST  79
             S+   L TLPL+ + NAD    + EPSS+
Sbjct  3171  SEGTELATLPLTEEENADSQLANIEPSSS  3199


>gi|60499608|gb|AAX22009.1|  SPLAYED splice variant [Arabidopsis thaliana]
Length=3543

 Score = 28.1 bits (61),  Expect = 9.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 0/29 (0%)
 Frame = -3

Query  165   SDALRLLTLPLSSDSNADFPSGDQEPSST  79
             S+   L TLPL+ + NAD    + EPSS+
Sbjct  3174  SEGTELATLPLTEEENADSQLANIEPSSS  3202


>gi|25407974|pir||B84683  hypothetical protein At2g28300 [imported] - Arabidopsis thaliana
Length=2218

 Score = 28.1 bits (61),  Expect = 9.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 0/29 (0%)
 Frame = -3

Query  165   SDALRLLTLPLSSDSNADFPSGDQEPSST  79
             S+   L TLPL+ + NAD    + EPSS+
Sbjct  1818  SEGTELATLPLTEEENADSQLANIEPSSS  1846

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 210
Number of extensions: 10
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 296
Length of database: 101054579
Length adjustment: 67
Effective length of query: 229
Effective length of database: 82070196
Effective search space: 2544176076
Effective search space used: 2544176076
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)