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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168937998-422-211158569092.BLASTQ4


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,458,890 sequences; 1,532,996,420 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig111
Length=521

Distribution of 79 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|92873940|gb|ABE82276.1|  RNA-binding region RNP-1 (RNA reco...   114    2e-25
gi|7528270|gb|AAF63202.1|AF240679_1  poly(A)-binding protein [Cuc   114    3e-25
gi|7673357|gb|AAF66824.1|AF190656_1  poly(A)-binding protein [Nic   110    2e-24 UniGene info
gi|7673355|gb|AAF66823.1|AF190655_1  poly(A)-binding protein [Nic   110    2e-24 UniGene info
gi|115477976|ref|NP_001062583.1|  Os09g0115400 [Oryza sativa (...   104    2e-22 Gene info
gi|1737492|gb|AAB38974.1|  poly(A)-binding protein [Triticum aest   100    2e-21 UniGene infoGene info
gi|7673359|gb|AAF66825.1|  poly(A)-binding protein [Nicotiana tab  99.0    9e-21 UniGene info
gi|13560783|gb|AAK30205.1|AF349964_1  poly(A)-binding protein [Da  97.1    3e-20
gi|18402769|ref|NP_564554.1|  PAB8; RNA binding / translation ...  96.3    6e-20 UniGene infoGene info
gi|106879567|emb|CAJ38367.1|  polyA-binding protein [Plantago maj  93.6    4e-19
gi|2213871|gb|AAB61594.1|  poly(A)-binding protein [Mesembryanthe  90.1    4e-18
gi|34015127|gb|AAQ56324.1|  putative poly(A)-binding protein [...  89.0    9e-18
gi|115475838|ref|NP_001061515.1|  Os08g0314800 [Oryza sativa (...  89.0    9e-18 Gene info
gi|92888900|gb|ABE89613.1|  polyadenylate binding protein, hum...  88.2    2e-17
gi|115459296|ref|NP_001053248.1|  Os04g0504800 [Oryza sativa (...  85.9    8e-17 Gene info
gi|70663933|emb|CAE02947.3|  OSJNBa0014K14.19 [Oryza sativa (japo  85.9    8e-17
gi|15227815|ref|NP_179916.1|  PAB4; RNA binding / translation ...  75.1    1e-13 UniGene infoGene info
gi|13430610|gb|AAK25927.1|AF360217_1  putative poly(A) binding pr  75.1    1e-13 UniGene info
gi|62321231|dbj|BAD94406.1|  putative poly(A) binding protein [Ar  75.1    1e-13 UniGene info
gi|1171978|sp|P42731|PABP2_ARATH  Polyadenylate-binding protei...  72.8    5e-13
gi|19347816|gb|AAL86321.1|  putative poly(A)-binding protein [Ara  72.8    5e-13 UniGene info
gi|30689921|ref|NP_195137.2|  PAB2 (POLY(A)-BINDING PROTEIN 2)...  72.8    6e-13 UniGene infoGene info
gi|62321453|dbj|BAD94856.1|  poly(A)-binding protein [Arabidopsis  72.4    7e-13 UniGene info
gi|83853808|gb|ABC47841.1|  poly(A)-binding protein [Glycine max]  67.0    4e-11
gi|47026849|gb|AAT08650.1|  poly(A)-binding protein [Hyacinthus o  63.9    2e-10
gi|92877410|gb|ABE84528.1|  Polyadenylate-binding protein/Hype...  60.8    3e-09
gi|14029147|gb|AAK51123.1|  polyadenylated mRNA-binding protein 2  59.7    4e-09
gi|398327|emb|CAA81127.1|  poly(A)-mRNA binding protein [Anemia p  57.0    4e-08
gi|15217573|ref|NP_177322.1|  PAB5 (POLY(A)-BINDING PROTEIN); ...  53.5    4e-07 UniGene infoGene info
gi|23197794|gb|AAN15424.1|  Strong similarity to poly(A)-bindi...  52.4    9e-07 UniGene info
gi|9930616|gb|AAG02117.1|AF293840_1  poly(A) binding protein [Ara  52.4    9e-07 UniGene info
gi|3287682|gb|AAC25510.1|AAC25510  Strong similarity to gb|M97...  52.4    9e-07
gi|15219945|ref|NP_173690.1|  PAB3 (POLY(A) BINDING PROTEIN 3)...  52.4    9e-07 UniGene infoGene info
gi|166786|gb|AAA32832.1|  poly(A)-binding protein                  51.6    2e-06
gi|2935338|gb|AAC39368.1|  poly(A) binding protein RB47 [Chlamydo  49.7    6e-06 UniGene info
gi|93359570|gb|ABF13311.1|  poly-A binding protein [Phaseolus vul  47.4    3e-05
gi|53801474|gb|AAU93939.1|  polyadenylate binding protein [Hel...  45.8    9e-05
gi|115468728|ref|NP_001057963.1|  Os06g0589700 [Oryza sativa (...  45.1    1e-04 Gene info
gi|115452253|ref|NP_001049727.1|  Os03g0278500 [Oryza sativa (...  45.1    1e-04 Gene info
gi|50725435|dbj|BAD32907.1|  putative polyadenylate-binding pr...  45.1    1e-04
gi|15230352|ref|NP_188566.1|  unknown protein [Arabidopsis tha...  37.4    0.031 UniGene infoGene info
gi|15228016|ref|NP_181204.1|  PAB7; RNA binding / translation ...  32.0    1.3   UniGene infoGene info
gi|50508275|dbj|BAD32124.1|  putative aspartic proteinase nepe...  31.6    1.7  
gi|30693557|ref|NP_174971.2|  unknown protein [Arabidopsis thalia  30.4    3.8   UniGene infoGene info
gi|53791704|dbj|BAD53299.1|  hypothetical protein [Oryza sativa (  30.0    4.9  
gi|115450547|ref|NP_001048874.1|  Os03g0133300 [Oryza sativa (...  29.3    8.4   Gene info
gi|62751085|dbj|BAD95790.1|  similar to aquaporin [Solanum lycope  29.3    8.4   UniGene infoGene info
gi|22758282|gb|AAN05510.1|  Hypothetical protein [Oryza sativa...  29.3    8.4  
gi|47848361|dbj|BAD22221.1|  hypothetical protein [Oryza sativ...  29.3    8.4   Gene info
Alignments

>gi|92873940|gb|ABE82276.1|  RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula]
Length=654

 Score =  114 bits (286),  Expect = 2e-25
 Identities = 57/66 (86%), Positives = 60/66 (90%), Gaps = 0/66 (0%)
 Frame = +1

Query  283  AGGMLSVPYDMGGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPD  462
            AGGM SVPYD+GGMP+RD  LSQ IPIGALAS LANASP+QQRTMLGENLYPLVEQLEPD
Sbjct  531  AGGMYSVPYDVGGMPIRDASLSQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPD  590

Query  463  AAAKVT  480
             AAKVT
Sbjct  591  NAAKVT  596


 Score = 48.9 bits (115),  Expect = 1e-05
 Identities = 32/37 (86%), Positives = 34/37 (91%), Gaps = 0/37 (0%)
 Frame = +3

Query  6    EAPPAIfppqpgfgyqqqLVPGMRPGGAPMPNFFVPM  116
            + PPAI P QPGFGYQQQLVPGMRPGGAP+PNFFVPM
Sbjct  439  QGPPAIIPSQPGFGYQQQLVPGMRPGGAPVPNFFVPM  475


>gi|7528270|gb|AAF63202.1|AF240679_1  poly(A)-binding protein [Cucumis sativus]
Length=649

 Score =  114 bits (284),  Expect = 3e-25
 Identities = 55/66 (83%), Positives = 59/66 (89%), Gaps = 0/66 (0%)
 Frame = +1

Query  283  AGGMLSVPYDMGGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPD  462
            AGGM SVPY+MGGMP RD    QP+P+GALASALANA+PDQQRTMLGENLYPLVEQLEPD
Sbjct  527  AGGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPD  586

Query  463  AAAKVT  480
             AAKVT
Sbjct  587  NAAKVT  592


 Score = 47.8 bits (112),  Expect = 2e-05
 Identities = 30/37 (81%), Positives = 32/37 (86%), Gaps = 0/37 (0%)
 Frame = +3

Query  6    EAPPAIfppqpgfgyqqqLVPGMRPGGAPMPNFFVPM  116
            +APP I   QPGFGYQQQL+PGMRPGG PMPNFFVPM
Sbjct  435  QAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPM  471


>gi|7673357|gb|AAF66824.1|AF190656_1 UniGene info poly(A)-binding protein [Nicotiana tabacum]
Length=330

 Score =  110 bits (276),  Expect = 2e-24
 Identities = 51/65 (78%), Positives = 59/65 (90%), Gaps = 0/65 (0%)
 Frame = +1

Query  286  GGMLSVPYDMGGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDA  465
            GGM S+PYDMGGMP+RD  + QPIP+GALA+ALAN+SP +QRTMLGENLYPLVEQLEP+ 
Sbjct  208  GGMFSIPYDMGGMPVRDAGIVQPIPVGALATALANSSPTEQRTMLGENLYPLVEQLEPET  267

Query  466  AAKVT  480
            AAKVT
Sbjct  268  AAKVT  272


 Score = 43.1 bits (100),  Expect = 6e-04
 Identities = 17/19 (89%), Positives = 18/19 (94%), Gaps = 0/19 (0%)
 Frame = +3

Query  60   LVPGMRPGGAPMPNFFVPM  116
            LVPGMRPGG PMPNFF+PM
Sbjct  131  LVPGMRPGGGPMPNFFMPM  149


>gi|7673355|gb|AAF66823.1|AF190655_1 UniGene info poly(A)-binding protein [Nicotiana tabacum]
Length=649

 Score =  110 bits (276),  Expect = 2e-24
 Identities = 51/65 (78%), Positives = 59/65 (90%), Gaps = 0/65 (0%)
 Frame = +1

Query  286  GGMLSVPYDMGGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDA  465
            GGM S+PYDMGGMP+RD  + QPIP+GALA+ALAN+SP +QRTMLGENLYPLVEQLEP+ 
Sbjct  527  GGMFSIPYDMGGMPVRDAGIVQPIPVGALATALANSSPTEQRTMLGENLYPLVEQLEPET  586

Query  466  AAKVT  480
            AAKVT
Sbjct  587  AAKVT  591


 Score = 43.1 bits (100),  Expect = 6e-04
 Identities = 17/19 (89%), Positives = 18/19 (94%), Gaps = 0/19 (0%)
 Frame = +3

Query  60   LVPGMRPGGAPMPNFFVPM  116
            LVPGMRPGG PMPNFF+PM
Sbjct  450  LVPGMRPGGGPMPNFFMPM  468


>gi|115477976|ref|NP_001062583.1| Gene info Os09g0115400 [Oryza sativa (japonica cultivar-group)]
 gi|46389987|dbj|BAD16229.1| Gene info putative poly(A)-binding protein [Oryza sativa (japonica cultivar-group)]
 gi|113630816|dbj|BAF24497.1| Gene info Os09g0115400 [Oryza sativa (japonica cultivar-group)]
Length=662

 Score =  104 bits (259),  Expect = 2e-22
 Identities = 49/65 (75%), Positives = 57/65 (87%), Gaps = 0/65 (0%)
 Frame = +1

Query  286  GGMLSVPYDMGGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDA  465
            GG++  PY+MGGMPMRD   SQP+PIGALA+ALANA+PDQQR MLGENLYPLV+QLE + 
Sbjct  538  GGVMPSPYEMGGMPMRDAAASQPVPIGALATALANAAPDQQRMMLGENLYPLVDQLEHEQ  597

Query  466  AAKVT  480
            AAKVT
Sbjct  598  AAKVT  602


 Score = 40.0 bits (92),  Expect = 0.005
 Identities = 24/37 (64%), Positives = 28/37 (75%), Gaps = 0/37 (0%)
 Frame = +3

Query  6    EAPPAIfppqpgfgyqqqLVPGMRPGGAPMPNFFVPM  116
            + PPA    QPGFG+QQ L+PGMRPG  PMPNF +PM
Sbjct  445  QPPPAFINTQPGFGFQQPLMPGMRPGAGPMPNFIMPM  481


>gi|1737492|gb|AAB38974.1| UniGene infoGene info poly(A)-binding protein [Triticum aestivum]
Length=651

 Score =  100 bits (250),  Expect = 2e-21
 Identities = 48/65 (73%), Positives = 56/65 (86%), Gaps = 0/65 (0%)
 Frame = +1

Query  286  GGMLSVPYDMGGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDA  465
            GG+++ PY+MGGMPMRD   SQP+PIGALASALAN+ P+ QR MLGENLYPLV+QLE D 
Sbjct  528  GGVMTSPYEMGGMPMRDAGESQPVPIGALASALANSPPETQRMMLGENLYPLVDQLEHDQ  587

Query  466  AAKVT  480
            AAKVT
Sbjct  588  AAKVT  592


 Score = 42.0 bits (97),  Expect = 0.001
 Identities = 26/35 (74%), Positives = 29/35 (82%), Gaps = 0/35 (0%)
 Frame = +3

Query  12   PPAIfppqpgfgyqqqLVPGMRPGGAPMPNFFVPM  116
            PPA   PQPGFG+QQ  +PGMRPGGAPMPNF +PM
Sbjct  437  PPAFINPQPGFGFQQPFMPGMRPGGAPMPNFMMPM  471


>gi|7673359|gb|AAF66825.1| UniGene info poly(A)-binding protein [Nicotiana tabacum]
Length=479

 Score = 99.0 bits (245),  Expect = 9e-21
 Identities = 49/65 (75%), Positives = 55/65 (84%), Gaps = 0/65 (0%)
 Frame = +1

Query  286  GGMLSVPYDMGGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDA  465
            GGMLSVPYDMGGM  RD  + QP+PI  LASALANA P+QQRTMLGE+LYPLV+QLE + 
Sbjct  359  GGMLSVPYDMGGMLPRDSAMGQPMPISTLASALANAPPEQQRTMLGESLYPLVDQLEHEH  418

Query  466  AAKVT  480
            AAKVT
Sbjct  419  AAKVT  423


 Score = 47.0 bits (110),  Expect = 4e-05
 Identities = 30/37 (81%), Positives = 34/37 (91%), Gaps = 0/37 (0%)
 Frame = +3

Query  6    EAPPAIfppqpgfgyqqqLVPGMRPGGAPMPNFFVPM  116
            + PPA+ PPQ GFGYQQQLVPGMRPGGAPMPNFF+P+
Sbjct  265  QGPPAMIPPQAGFGYQQQLVPGMRPGGAPMPNFFMPL  301


>gi|13560783|gb|AAK30205.1|AF349964_1  poly(A)-binding protein [Daucus carota]
Length=658

 Score = 97.1 bits (240),  Expect = 3e-20
 Identities = 49/65 (75%), Positives = 54/65 (83%), Gaps = 0/65 (0%)
 Frame = +1

Query  286  GGMLSVPYDMGGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDA  465
            GGML VPY+MGGM  R+  + QP+PI ALASALANA  DQQRTMLGENLYPLV+QLE D 
Sbjct  539  GGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDH  598

Query  466  AAKVT  480
            AAKVT
Sbjct  599  AAKVT  603


 Score = 48.1 bits (113),  Expect = 2e-05
 Identities = 30/37 (81%), Positives = 33/37 (89%), Gaps = 0/37 (0%)
 Frame = +3

Query  6    EAPPAIfppqpgfgyqqqLVPGMRPGGAPMPNFFVPM  116
            +APPA+  PQ GFGYQQQLVPGMRPGG PMPNFF+PM
Sbjct  445  QAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPM  481


>gi|18402769|ref|NP_564554.1| UniGene infoGene info PAB8; RNA binding / translation initiation factor [Arabidopsis 
thaliana]
 gi|10120431|gb|AAG13056.1|AC011807_15 Gene info Putative Poly-A Binding Protein [Arabidopsis thaliana]
 gi|13877633|gb|AAK43894.1|AF370517_1 UniGene infoGene info Putative Poly-A Binding Protein [Arabidopsis thaliana]
 gi|17978685|gb|AAL47336.1| UniGene infoGene info putative Poly-A Binding Protein [Arabidopsis thaliana]
Length=671

 Score = 96.3 bits (238),  Expect = 6e-20
 Identities = 49/66 (74%), Positives = 57/66 (86%), Gaps = 3/66 (4%)
 Frame = +1

Query  292  MLSVPYDM---GGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPD  462
            MLSVPYD+   GG+  RD P SQP+PI ALA+ LANA+P+QQRTMLGENLYPLVEQLEP+
Sbjct  548  MLSVPYDVSSGGGVHHRDSPTSQPVPIVALATRLANAAPEQQRTMLGENLYPLVEQLEPE  607

Query  463  AAAKVT  480
            +AAKVT
Sbjct  608  SAAKVT  613


 Score = 43.5 bits (101),  Expect = 4e-04
 Identities = 17/19 (89%), Positives = 19/19 (100%), Gaps = 0/19 (0%)
 Frame = +3

Query  60   LVPGMRPGGAPMPNFFVPM  116
            LVPGMRPGG+PMPNFF+PM
Sbjct  467  LVPGMRPGGSPMPNFFMPM  485


>gi|106879567|emb|CAJ38367.1|  polyA-binding protein [Plantago major]
Length=314

 Score = 93.6 bits (231),  Expect = 4e-19
 Identities = 49/69 (71%), Positives = 56/69 (81%), Gaps = 1/69 (1%)
 Frame = +1

Query  277  M*AGGMLSVPYDMGGMPMRDVP-LSQPIPIGALASALANASPDQQRTMLGENLYPLVEQL  453
            M  GGM SVPYDM GM  RD   + QP+P+ ALASALANA+P+QQRTMLGENLYPLV+QL
Sbjct  188  MTGGGMFSVPYDMTGMLPRDAAAIPQPMPVTALASALANATPEQQRTMLGENLYPLVDQL  247

Query  454  EPDAAAKVT  480
            E + AAKVT
Sbjct  248  EHEHAAKVT  256


 Score = 46.6 bits (109),  Expect = 5e-05
 Identities = 29/37 (78%), Positives = 32/37 (86%), Gaps = 0/37 (0%)
 Frame = +3

Query  6    EAPPAIfppqpgfgyqqqLVPGMRPGGAPMPNFFVPM  116
            + PPA+ P Q GFGYQQQLVPGMRPGG PMPNFF+PM
Sbjct  99   QGPPAMIPSQAGFGYQQQLVPGMRPGGTPMPNFFMPM  135


>gi|2213871|gb|AAB61594.1|  poly(A)-binding protein [Mesembryanthemum crystallinum]
Length=176

 Score = 90.1 bits (222),  Expect = 4e-18
 Identities = 46/66 (69%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
 Frame = +1

Query  286  GGML-SVPYDMGGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPD  462
            GG+L  V YDMGGMP+RD  LS  +P+G LA+ LANA+P+QQR +LGENLYPLVEQLEP+
Sbjct  50   GGVLPGVQYDMGGMPIRD--LSPTVPVGTLATLLANATPEQQRLLLGENLYPLVEQLEPE  107

Query  463  AAAKVT  480
             AAKVT
Sbjct  108  MAAKVT  113


>gi|34015127|gb|AAQ56324.1|  putative poly(A)-binding protein [Oryza sativa (japonica cultivar-group)]
Length=266

 Score = 89.0 bits (219),  Expect = 9e-18
 Identities = 43/65 (66%), Positives = 51/65 (78%), Gaps = 0/65 (0%)
 Frame = +1

Query  286  GGMLSVPYDMGGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDA  465
            GG++  PY+MG MP+ D      +PIGALASALAN+ PDQQR MLGE+LYPLV+QLE D 
Sbjct  144  GGLVPSPYEMGRMPLSDAGAPPQVPIGALASALANSPPDQQRLMLGESLYPLVDQLEHDQ  203

Query  466  AAKVT  480
            AAKVT
Sbjct  204  AAKVT  208


 Score = 32.7 bits (73),  Expect = 0.76
 Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 0/19 (0%)
 Frame = +3

Query  60   LVPGMRPGGAPMPNFFVPM  116
            L+PGMRP   P+PNF +PM
Sbjct  69   LIPGMRPSVGPIPNFVMPM  87


>gi|115475838|ref|NP_001061515.1| Gene info Os08g0314800 [Oryza sativa (japonica cultivar-group)]
 gi|35215045|dbj|BAC92404.1| Gene info putative polyadenylate-binding protein [Oryza sativa (japonica 
cultivar-group)]
 gi|35215184|dbj|BAC92537.1| Gene info putative polyadenylate-binding protein [Oryza sativa (japonica 
cultivar-group)]
 gi|113623484|dbj|BAF23429.1| Gene info Os08g0314800 [Oryza sativa (japonica cultivar-group)]
Length=660

 Score = 89.0 bits (219),  Expect = 9e-18
 Identities = 43/65 (66%), Positives = 51/65 (78%), Gaps = 0/65 (0%)
 Frame = +1

Query  286  GGMLSVPYDMGGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDA  465
            GG++  PY+MG MP+ D      +PIGALASALAN+ PDQQR MLGE+LYPLV+QLE D 
Sbjct  538  GGLVPSPYEMGRMPLSDAGAPPQVPIGALASALANSPPDQQRLMLGESLYPLVDQLEHDQ  597

Query  466  AAKVT  480
            AAKVT
Sbjct  598  AAKVT  602


 Score = 35.4 bits (80),  Expect = 0.12
 Identities = 23/37 (62%), Positives = 28/37 (75%), Gaps = 0/37 (0%)
 Frame = +3

Query  6    EAPPAIfppqpgfgyqqqLVPGMRPGGAPMPNFFVPM  116
            + PPA   PQPGFG+QQ L+PGMRP   P+PNF +PM
Sbjct  445  QPPPAFVNPQPGFGFQQHLIPGMRPSVGPIPNFVMPM  481


>gi|92888900|gb|ABE89613.1|  polyadenylate binding protein, human types 1, 2, 3, 4 family 
[Medicago truncatula]
Length=647

 Score = 88.2 bits (217),  Expect = 2e-17
 Identities = 47/65 (72%), Positives = 55/65 (84%), Gaps = 4/65 (6%)
 Frame = +1

Query  286  GGMLSVPYDMGGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDA  465
            GGM+S  YDMGG+P+RDV    P+PI ALA+ALANA P+QQRTMLGE LYPLV+QLE D+
Sbjct  532  GGMMS--YDMGGLPLRDVV--PPMPIHALATALANAPPEQQRTMLGEALYPLVDQLEHDS  587

Query  466  AAKVT  480
            AAKVT
Sbjct  588  AAKVT  592


 Score = 44.7 bits (104),  Expect = 2e-04
 Identities = 29/37 (78%), Positives = 33/37 (89%), Gaps = 0/37 (0%)
 Frame = +3

Query  6    EAPPAIfppqpgfgyqqqLVPGMRPGGAPMPNFFVPM  116
            + PPA+ PPQ GFGYQQQLVPGMRPGG PMP++FVPM
Sbjct  438  QGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSYFVPM  474


>gi|115459296|ref|NP_001053248.1| Gene info Os04g0504800 [Oryza sativa (japonica cultivar-group)]
 gi|32490269|emb|CAE05558.1| Gene info OSJNBb0116K07.11 [Oryza sativa (japonica cultivar-group)]
 gi|113564819|dbj|BAF15162.1| Gene info Os04g0504800 [Oryza sativa (japonica cultivar-group)]
Length=659

 Score = 85.9 bits (211),  Expect = 8e-17
 Identities = 46/66 (69%), Positives = 53/66 (80%), Gaps = 2/66 (3%)
 Frame = +1

Query  283  AGGMLSVPYDMGGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPD  462
            AGGM+   YDMGG P+RD  LS P PIG L SALANA+P+QQRT+LGE+LYPLVE LE +
Sbjct  537  AGGMIQ-SYDMGGFPVRDAGLS-PAPIGTLTSALANANPEQQRTILGESLYPLVELLEQN  594

Query  463  AAAKVT  480
             AAKVT
Sbjct  595  HAAKVT  600


 Score = 45.8 bits (107),  Expect = 9e-05
 Identities = 31/37 (83%), Positives = 35/37 (94%), Gaps = 0/37 (0%)
 Frame = +3

Query  6    EAPPAIfppqpgfgyqqqLVPGMRPGGAPMPNFFVPM  116
            +APPAI PPQPGFG+QQQLVPGMRPGGA MPN+FVP+
Sbjct  443  QAPPAIMPPQPGFGFQQQLVPGMRPGGAHMPNYFVPV  479


>gi|70663933|emb|CAE02947.3|  OSJNBa0014K14.19 [Oryza sativa (japonica cultivar-group)]
Length=657

 Score = 85.9 bits (211),  Expect = 8e-17
 Identities = 46/66 (69%), Positives = 53/66 (80%), Gaps = 2/66 (3%)
 Frame = +1

Query  283  AGGMLSVPYDMGGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPD  462
            AGGM+   YDMGG P+RD  LS P PIG L SALANA+P+QQRT+LGE+LYPLVE LE +
Sbjct  535  AGGMIQ-SYDMGGFPVRDAGLS-PAPIGTLTSALANANPEQQRTILGESLYPLVELLEQN  592

Query  463  AAAKVT  480
             AAKVT
Sbjct  593  HAAKVT  598


 Score = 45.8 bits (107),  Expect = 9e-05
 Identities = 31/37 (83%), Positives = 35/37 (94%), Gaps = 0/37 (0%)
 Frame = +3

Query  6    EAPPAIfppqpgfgyqqqLVPGMRPGGAPMPNFFVPM  116
            +APPAI PPQPGFG+QQQLVPGMRPGGA MPN+FVP+
Sbjct  441  QAPPAIMPPQPGFGFQQQLVPGMRPGGAHMPNYFVPV  477


>gi|15227815|ref|NP_179916.1| UniGene infoGene info PAB4; RNA binding / translation initiation factor [Arabidopsis 
thaliana]
 gi|2642429|gb|AAB87097.1| Gene info putative poly(A) binding protein [Arabidopsis thaliana]
 gi|15292851|gb|AAK92796.1| UniGene infoGene info putative poly(A) binding protein [Arabidopsis thaliana]
 gi|19310779|gb|AAL85120.1| UniGene infoGene info putative poly(A) binding protein [Arabidopsis thaliana]
Length=662

 Score = 75.1 bits (183),  Expect(2) = 1e-13
 Identities = 39/65 (60%), Positives = 49/65 (75%), Gaps = 5/65 (7%)
 Frame = +1

Query  286  GGMLSVPYDMGGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDA  465
            GGM+ V YDM  MP      SQP+  G LA++LANA+P QQRT+LGE+LYPLV+Q+E + 
Sbjct  539  GGMVPVAYDMNVMPY-----SQPMSAGQLATSLANATPAQQRTLLGESLYPLVDQIESEH  593

Query  466  AAKVT  480
            AAKVT
Sbjct  594  AAKVT  598


 Score = 20.4 bits (41),  Expect(2) = 1e-13
 Identities = 8/9 (88%), Positives = 8/9 (88%), Gaps = 0/9 (0%)
 Frame = +2

Query  494  EMDQTEVWH  520
            EMDQTEV H
Sbjct  603  EMDQTEVLH  611


>gi|13430610|gb|AAK25927.1|AF360217_1 UniGene info putative poly(A) binding protein [Arabidopsis thaliana]
Length=662

 Score = 75.1 bits (183),  Expect(2) = 1e-13
 Identities = 39/65 (60%), Positives = 49/65 (75%), Gaps = 5/65 (7%)
 Frame = +1

Query  286  GGMLSVPYDMGGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDA  465
            GGM+ V YDM  MP      SQP+  G LA++LANA+P QQRT+LGE+LYPLV+Q+E + 
Sbjct  539  GGMVPVAYDMNVMPY-----SQPMSAGQLATSLANATPAQQRTLLGESLYPLVDQIESEH  593

Query  466  AAKVT  480
            AAKVT
Sbjct  594  AAKVT  598


 Score = 20.4 bits (41),  Expect(2) = 1e-13
 Identities = 8/9 (88%), Positives = 8/9 (88%), Gaps = 0/9 (0%)
 Frame = +2

Query  494  EMDQTEVWH  520
            EMDQTEV H
Sbjct  603  EMDQTEVLH  611


>gi|62321231|dbj|BAD94406.1| UniGene info putative poly(A) binding protein [Arabidopsis thaliana]
Length=154

 Score = 75.1 bits (183),  Expect(2) = 1e-13
 Identities = 39/65 (60%), Positives = 49/65 (75%), Gaps = 5/65 (7%)
 Frame = +1

Query  286  GGMLSVPYDMGGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDA  465
            GGM+ V YDM  MP      SQP+  G LA++LANA+P QQRT+LGE+LYPLV+Q+E + 
Sbjct  31   GGMVPVAYDMNVMPY-----SQPMSAGQLATSLANATPAQQRTLLGESLYPLVDQIESEH  85

Query  466  AAKVT  480
            AAKVT
Sbjct  86   AAKVT  90


 Score = 20.4 bits (41),  Expect(2) = 1e-13
 Identities = 8/9 (88%), Positives = 8/9 (88%), Gaps = 0/9 (0%)
 Frame = +2

Query  494  EMDQTEVWH  520
            EMDQTEV H
Sbjct  95   EMDQTEVLH  103


>gi|1171978|sp|P42731|PABP2_ARATH  Polyadenylate-binding protein 2 (Poly(A)-binding protein 2) (PABP 
2)
 gi|304109|gb|AAA61780.1| UniGene info poly(A)-binding protein
 gi|2911051|emb|CAA17561.1|  poly(A)-binding protein [Arabidopsis thaliana]
 gi|7270360|emb|CAB80128.1|  poly(A)-binding protein [Arabidopsis thaliana]
 gi|26983870|gb|AAN86187.1| UniGene info putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis 
thaliana]
Length=629

 Score = 72.8 bits (177),  Expect(2) = 5e-13
 Identities = 41/77 (53%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
 Frame = +1

Query  259  LMFQCLM*AGGMLSVPYDMGG---MPMRDVPLSQPIPIGALASALANASPDQQRTMLGEN  429
            +M Q +   G M   P   GG   +P  D+  + P+ IGALAS L+NA+P+QQRTMLGE 
Sbjct  503  MMQQQMHPRGRMFRYPQGRGGSGDVPPYDMGNNMPLTIGALASNLSNATPEQQRTMLGEV  562

Query  430  LYPLVEQLEPDAAAKVT  480
            LYPLVEQ+E ++AAKVT
Sbjct  563  LYPLVEQVEAESAAKVT  579


 Score = 20.4 bits (41),  Expect(2) = 5e-13
 Identities = 8/9 (88%), Positives = 8/9 (88%), Gaps = 0/9 (0%)
 Frame = +2

Query  494  EMDQTEVWH  520
            EMDQTEV H
Sbjct  584  EMDQTEVLH  592


 Score = 44.7 bits (104),  Expect = 2e-04
 Identities = 29/37 (78%), Positives = 35/37 (94%), Gaps = 0/37 (0%)
 Frame = +3

Query  6    EAPPAIfppqpgfgyqqqLVPGMRPGGAPMPNFFVPM  116
            +APPA+ PPQPG+GYQQQLVPGMRPGG P+P+FF+PM
Sbjct  441  QAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPM  477


>gi|19347816|gb|AAL86321.1| UniGene info putative poly(A)-binding protein [Arabidopsis thaliana]
Length=613

 Score = 72.8 bits (177),  Expect(2) = 5e-13
 Identities = 41/77 (53%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
 Frame = +1

Query  259  LMFQCLM*AGGMLSVPYDMGG---MPMRDVPLSQPIPIGALASALANASPDQQRTMLGEN  429
            +M Q +   G M   P   GG   +P  D+  + P+ IGALAS L+NA+P+QQRTMLGE 
Sbjct  487  MMQQQMHPRGRMFRYPQGRGGSGDVPPYDMGNNMPLTIGALASNLSNATPEQQRTMLGEV  546

Query  430  LYPLVEQLEPDAAAKVT  480
            LYPLVEQ+E ++AAKVT
Sbjct  547  LYPLVEQVEAESAAKVT  563


 Score = 20.4 bits (41),  Expect(2) = 5e-13
 Identities = 8/9 (88%), Positives = 8/9 (88%), Gaps = 0/9 (0%)
 Frame = +2

Query  494  EMDQTEVWH  520
            EMDQTEV H
Sbjct  568  EMDQTEVLH  576


 Score = 44.7 bits (104),  Expect = 2e-04
 Identities = 29/37 (78%), Positives = 35/37 (94%), Gaps = 0/37 (0%)
 Frame = +3

Query  6    EAPPAIfppqpgfgyqqqLVPGMRPGGAPMPNFFVPM  116
            +APPA+ PPQPG+GYQQQLVPGMRPGG P+P+FF+PM
Sbjct  425  QAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPM  461


>gi|30689921|ref|NP_195137.2| UniGene infoGene info PAB2 (POLY(A)-BINDING PROTEIN 2); RNA binding [Arabidopsis thaliana]
Length=443

 Score = 72.8 bits (177),  Expect(2) = 6e-13
 Identities = 41/77 (53%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
 Frame = +1

Query  259  LMFQCLM*AGGMLSVPYDMGG---MPMRDVPLSQPIPIGALASALANASPDQQRTMLGEN  429
            +M Q +   G M   P   GG   +P  D+  + P+ IGALAS L+NA+P+QQRTMLGE 
Sbjct  317  MMQQQMHPRGRMFRYPQGRGGSGDVPPYDMGNNMPLTIGALASNLSNATPEQQRTMLGEV  376

Query  430  LYPLVEQLEPDAAAKVT  480
            LYPLVEQ+E ++AAKVT
Sbjct  377  LYPLVEQVEAESAAKVT  393


 Score = 20.4 bits (41),  Expect(2) = 6e-13
 Identities = 8/9 (88%), Positives = 8/9 (88%), Gaps = 0/9 (0%)
 Frame = +2

Query  494  EMDQTEVWH  520
            EMDQTEV H
Sbjct  398  EMDQTEVLH  406


 Score = 44.7 bits (104),  Expect = 2e-04
 Identities = 29/37 (78%), Positives = 35/37 (94%), Gaps = 0/37 (0%)
 Frame = +3

Query  6    EAPPAIfppqpgfgyqqqLVPGMRPGGAPMPNFFVPM  116
            +APPA+ PPQPG+GYQQQLVPGMRPGG P+P+FF+PM
Sbjct  255  QAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPM  291


>gi|62321453|dbj|BAD94856.1| UniGene info poly(A)-binding protein [Arabidopsis thaliana]
Length=126

 Score = 72.4 bits (176),  Expect(2) = 7e-13
 Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 3/68 (4%)
 Frame = +1

Query  286  GGMLSVPYDMGG---MPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLE  456
            G M   P   GG   +P  D+  + P+ IGALAS L+NA+P+QQRTMLGE LYPLVEQ+E
Sbjct  9    GRMFRYPQGRGGSGDVPPYDMGNNMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVE  68

Query  457  PDAAAKVT  480
             ++AAKVT
Sbjct  69   AESAAKVT  76


 Score = 20.4 bits (41),  Expect(2) = 7e-13
 Identities = 8/9 (88%), Positives = 8/9 (88%), Gaps = 0/9 (0%)
 Frame = +2

Query  494  EMDQTEVWH  520
            EMDQTEV H
Sbjct  81   EMDQTEVLH  89


>gi|83853808|gb|ABC47841.1|  poly(A)-binding protein [Glycine max]
Length=630

 Score = 67.0 bits (162),  Expect = 4e-11
 Identities = 36/58 (62%), Positives = 45/58 (77%), Gaps = 2/58 (3%)
 Frame = +1

Query  313  MGGMP--MRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDAAAKVT  480
            + G+P  M    + Q +P  ALASALANA+P+QQRTMLGE LYPLV++LE +AAAKVT
Sbjct  515  LAGVPGGMVTYGIGQQMPTQALASALANATPEQQRTMLGEALYPLVDKLEHEAAAKVT  572


 Score = 32.3 bits (72),  Expect = 0.99
 Identities = 14/18 (77%), Positives = 16/18 (88%), Gaps = 2/18 (11%)
 Frame = +3

Query  63   VPGMRPGGAPMPNFFVPM  116
            VPGMRPGGA  PNF+VP+
Sbjct  447  VPGMRPGGA--PNFYVPL  462


>gi|47026849|gb|AAT08650.1|  poly(A)-binding protein [Hyacinthus orientalis]
Length=126

 Score = 63.9 bits (154),  Expect(2) = 2e-10
 Identities = 34/44 (77%), Positives = 36/44 (81%), Gaps = 0/44 (0%)
 Frame = +1

Query  349  QPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDAAAKVT  480
            Q  PI ALASALANASP+ QR MLGENLYPLV QLE + AAKVT
Sbjct  25   QQQPIIALASALANASPEHQRMMLGENLYPLVAQLETEHAAKVT  68


 Score = 20.4 bits (41),  Expect(2) = 2e-10
 Identities = 8/9 (88%), Positives = 8/9 (88%), Gaps = 0/9 (0%)
 Frame = +2

Query  494  EMDQTEVWH  520
            EMDQTEV H
Sbjct  73   EMDQTEVLH  81


>gi|92877410|gb|ABE84528.1|  Polyadenylate-binding protein/Hyperplastic disc protein; Anthranilate 
synthase component I and chorismate binding protein 
[Medicago truncatula]
Length=220

 Score = 60.8 bits (146),  Expect = 3e-09
 Identities = 34/54 (62%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
 Frame = +1

Query  319  GMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDAAAKVT  480
            G+PM  V  +   P+ ALA+ALANA P+QQRTMLGE LYPLVE++E   AAKVT
Sbjct  111  GIPMPGV--AGGTPMQALATALANAPPEQQRTMLGEVLYPLVEKIEHAGAAKVT  162


 Score = 45.1 bits (105),  Expect = 1e-04
 Identities = 24/37 (64%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +3

Query  6    EAPPAIfppqpgfgyqqqLVPGMRPGGAPMPNFFVPM  116
            +APPA          QQ LVPGMRPGGAPMPNFF+PM
Sbjct  26   QAPPAFISQAGFGYPQQ-LVPGMRPGGAPMPNFFMPM  61


>gi|14029147|gb|AAK51123.1|  polyadenylated mRNA-binding protein 2 [Anemia phyllitidis]
Length=472

 Score = 59.7 bits (143),  Expect(2) = 4e-09
 Identities = 37/59 (62%), Positives = 42/59 (71%), Gaps = 6/59 (10%)
 Frame = +1

Query  310  DMGG-MP-MRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDAAAKVT  480
            DMGG +P   D  L  P    ALASALA+ASP+QQR MLGE LYPLV++LE D A KVT
Sbjct  358  DMGGALPNSSDTGLYMP----ALASALASASPEQQRVMLGEQLYPLVDRLEHDHAGKVT  412


 Score = 20.4 bits (41),  Expect(2) = 4e-09
 Identities = 8/9 (88%), Positives = 8/9 (88%), Gaps = 0/9 (0%)
 Frame = +2

Query  494  EMDQTEVWH  520
            EMDQTEV H
Sbjct  417  EMDQTEVLH  425


 Score = 35.8 bits (81),  Expect = 0.089
 Identities = 13/18 (72%), Positives = 16/18 (88%), Gaps = 0/18 (0%)
 Frame = +3

Query  60   LVPGMRPGGAPMPNFFVP  113
            +VPGMRPGG  MPN+F+P
Sbjct  277  MVPGMRPGGPQMPNYFLP  294


>gi|398327|emb|CAA81127.1|  poly(A)-mRNA binding protein [Anemia phyllitidis]
Length=638

 Score = 57.0 bits (136),  Expect = 4e-08
 Identities = 28/38 (73%), Positives = 33/38 (86%), Gaps = 0/38 (0%)
 Frame = +1

Query  367  ALASALANASPDQQRTMLGENLYPLVEQLEPDAAAKVT  480
            ALASALA+ASP++QR MLGE LYPLV++LE D A KVT
Sbjct  542  ALASALASASPEEQRVMLGEQLYPLVDRLEHDHAGKVT  579


>gi|15217573|ref|NP_177322.1| UniGene infoGene info PAB5 (POLY(A)-BINDING PROTEIN); RNA binding [Arabidopsis thaliana]
 gi|21542448|sp|Q05196|PABP5_ARATH Gene info Polyadenylate-binding protein 5 (Poly(A)-binding protein 5) (PABP 
5)
 gi|7239504|gb|AAF43230.1|AC012654_14 Gene info Identical to the polyadenylate-binding protein 5 (PAB5) from 
Arabidopsis thaliana gb|M97657
Length=668

 Score = 53.5 bits (127),  Expect = 4e-07
 Identities = 28/43 (65%), Positives = 32/43 (74%), Gaps = 0/43 (0%)
 Frame = +1

Query  352  PIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDAAAKVT  480
            P+ I  LAS LA ASPD+   MLG++LYPLVEQ EP  AAKVT
Sbjct  572  PLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVT  614


>gi|23197794|gb|AAN15424.1| UniGene info Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis 
thaliana]
Length=379

 Score = 52.4 bits (124),  Expect = 9e-07
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
 Frame = +1

Query  292  MLSVPYDMGGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDAAA  471
            ++ +P D   +  +  PL   +PI  L S+LA+ASP  +  MLGE LYPLVE+ EP   A
Sbjct  271  IIPLPIDASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVA  327

Query  472  KVT  480
            KVT
Sbjct  328  KVT  330


>gi|9930616|gb|AAG02117.1|AF293840_1 UniGene info poly(A) binding protein [Arabidopsis thaliana]
Length=660

 Score = 52.4 bits (124),  Expect = 9e-07
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
 Frame = +1

Query  292  MLSVPYDMGGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDAAA  471
            ++ +P D   +  +  PL   +PI  L S+LA+ASP  +  MLGE LYPLVE+ EP   A
Sbjct  552  IIPLPIDASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVA  608

Query  472  KVT  480
            KVT
Sbjct  609  KVT  611


>gi|3287682|gb|AAC25510.1|AAC25510  Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) 
from A. thaliana. [Arabidopsis thaliana]
Length=655

 Score = 52.4 bits (124),  Expect = 9e-07
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
 Frame = +1

Query  292  MLSVPYDMGGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDAAA  471
            ++ +P D   +  +  PL   +PI  L S+LA+ASP  +  MLGE LYPLVE+ EP   A
Sbjct  547  IIPLPIDASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVA  603

Query  472  KVT  480
            KVT
Sbjct  604  KVT  606


>gi|15219945|ref|NP_173690.1| UniGene infoGene info PAB3 (POLY(A) BINDING PROTEIN 3); RNA binding [Arabidopsis thaliana]
 gi|12643628|sp|O64380|PABP3_ARATH Gene info Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP 
3)
 gi|2505869|emb|CAA72907.1| Gene info polyA binding protein PAB3 [Arabidopsis thaliana]
 gi|15450820|gb|AAK96681.1| UniGene infoGene info Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis 
thaliana]
Length=660

 Score = 52.4 bits (124),  Expect = 9e-07
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
 Frame = +1

Query  292  MLSVPYDMGGMPMRDVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDAAA  471
            ++ +P D   +  +  PL   +PI  L S+LA+ASP  +  MLGE LYPLVE+ EP   A
Sbjct  552  IIPLPIDASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVA  608

Query  472  KVT  480
            KVT
Sbjct  609  KVT  611


>gi|166786|gb|AAA32832.1|  poly(A)-binding protein
Length=668

 Score = 51.6 bits (122),  Expect = 2e-06
 Identities = 27/43 (62%), Positives = 31/43 (72%), Gaps = 0/43 (0%)
 Frame = +1

Query  352  PIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDAAAKVT  480
            P+ I  LAS LA ASPD+   MLG++LYPLVEQ EP   AKVT
Sbjct  572  PLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANPAKVT  614


>gi|2935338|gb|AAC39368.1| UniGene info poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length=623

 Score = 49.7 bits (117),  Expect = 6e-06
 Identities = 22/36 (61%), Positives = 29/36 (80%), Gaps = 0/36 (0%)
 Frame = +1

Query  373  ASALANASPDQQRTMLGENLYPLVEQLEPDAAAKVT  480
            ASALA A+P+QQ+ M+GE LYP V +L+PD A K+T
Sbjct  544  ASALAAAAPEQQKMMIGERLYPQVAELQPDLAGKIT  579


>gi|93359570|gb|ABF13311.1|  poly-A binding protein [Phaseolus vulgaris]
Length=172

 Score = 47.4 bits (111),  Expect = 3e-05
 Identities = 31/38 (81%), Positives = 34/38 (89%), Gaps = 0/38 (0%)
 Frame = +3

Query  3    HEAPPAIfppqpgfgyqqqLVPGMRPGGAPMPNFFVPM  116
            ++ PPAI P QPGFGYQQQLVPGMRPG AP+PNFFVPM
Sbjct  97   YQGPPAIIPSQPGFGYQQQLVPGMRPGAAPVPNFFVPM  134


>gi|53801474|gb|AAU93939.1|  polyadenylate binding protein [Helicosporidium sp. ex Simulium 
jonesii]
Length=107

 Score = 45.8 bits (107),  Expect = 9e-05
 Identities = 20/37 (54%), Positives = 30/37 (81%), Gaps = 0/37 (0%)
 Frame = +1

Query  370  LASALANASPDQQRTMLGENLYPLVEQLEPDAAAKVT  480
            L++ LA+ASP+QQ+ +LGE L+P V Q +P+ AAK+T
Sbjct  14   LSAILASASPEQQKQLLGEQLFPKVAQHQPELAAKIT  50


>gi|115468728|ref|NP_001057963.1| Gene info Os06g0589700 [Oryza sativa (japonica cultivar-group)]
 gi|113596003|dbj|BAF19877.1| Gene info Os06g0589700 [Oryza sativa (japonica cultivar-group)]
Length=399

 Score = 45.1 bits (105),  Expect = 1e-04
 Identities = 22/41 (53%), Positives = 31/41 (75%), Gaps = 0/41 (0%)
 Frame = +1

Query  358  PIGALASALANASPDQQRTMLGENLYPLVEQLEPDAAAKVT  480
            P   L ++LA+A+P+QQR +LG+ L+PLVEQL  + A KVT
Sbjct  296  PSNNLQTSLASANPEQQREILGDMLFPLVEQLVNEKAYKVT  336


>gi|115452253|ref|NP_001049727.1| Gene info Os03g0278500 [Oryza sativa (japonica cultivar-group)]
 gi|108707490|gb|ABF95285.1| Gene info polyadenylate binding protein, types 1, 2, 3, 4 family protein, 
expressed [Oryza sativa (japonica cultivar-group)]
 gi|113548198|dbj|BAF11641.1| Gene info Os03g0278500 [Oryza sativa (japonica cultivar-group)]
Length=647

 Score = 45.1 bits (105),  Expect = 1e-04
 Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 0/38 (0%)
 Frame = +1

Query  367  ALASALANASPDQQRTMLGENLYPLVEQLEPDAAAKVT  480
            A  + LA A P++Q+ MLG  LYPLVE+  PD A+K+T
Sbjct  551  AFNNLLATAPPEEQKNMLGNRLYPLVERHHPDLASKIT  588


>gi|50725435|dbj|BAD32907.1|  putative polyadenylate-binding protein [Oryza sativa (japonica 
cultivar-group)]
Length=670

 Score = 45.1 bits (105),  Expect = 1e-04
 Identities = 22/41 (53%), Positives = 31/41 (75%), Gaps = 0/41 (0%)
 Frame = +1

Query  358  PIGALASALANASPDQQRTMLGENLYPLVEQLEPDAAAKVT  480
            P   L ++LA+A+P+QQR +LG+ L+PLVEQL  + A KVT
Sbjct  567  PSNNLQTSLASANPEQQREILGDMLFPLVEQLVNEKAYKVT  607


>gi|15230352|ref|NP_188566.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
 gi|11994457|dbj|BAB02459.1| Gene info poly(A)-binding protein-like [Arabidopsis thaliana]
 gi|88900360|gb|ABD57492.1| UniGene infoGene info At3g19350 [Arabidopsis thaliana]
Length=103

 Score = 37.4 bits (85),  Expect = 0.031
 Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 0/33 (0%)
 Frame = +1

Query  382  LANASPDQQRTMLGENLYPLVEQLEPDAAAKVT  480
            LA+  P +QR ++GE L+ +VE+LEP  A K+T
Sbjct  23   LASLPPKEQRDLIGETLFFMVEELEPQFAPKIT  55


>gi|15228016|ref|NP_181204.1| UniGene infoGene info PAB7; RNA binding / translation initiation factor [Arabidopsis 
thaliana]
 gi|12229883|sp|Q9ZQA8|PABPX_ARATH Gene info Probable polyadenylate-binding protein At2g36660 (Poly(A)-binding 
protein At2g36660) (PABP)
 gi|4415911|gb|AAD20142.1| Gene info putative poly(A) binding protein [Arabidopsis thaliana]
Length=609

 Score = 32.0 bits (71),  Expect = 1.3
 Identities = 14/22 (63%), Positives = 18/22 (81%), Gaps = 0/22 (0%)
 Frame = +1

Query  415  MLGENLYPLVEQLEPDAAAKVT  480
            +LGE L+PLVE+LEP  A K+T
Sbjct  528  LLGELLHPLVEKLEPQLANKIT  549


>gi|50508275|dbj|BAD32124.1|  putative aspartic proteinase nepenthesin I [Oryza sativa (japonica 
cultivar-group)]
Length=451

 Score = 31.6 bits (70),  Expect = 1.7
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +2

Query  17   CYFSTSAWIWISTAACPWYEAW-WGSHAKFLCTDGSARPAGSASWWQKGWGCSAKSATGS  193
            C F TS ++  +   C +Y  +  G  A +L T+      G AS+    +GCS ++  G+
Sbjct  150  CQFLTSPYLTCNATGCVYYYPYGMGFTAGYLATE--TLHVGGASFPGVAFGCSTENGVGN  207

Query  194  INAAADATPRAGLSL  238
             ++      R+ LSL
Sbjct  208  SSSGIVGLGRSPLSL  222


>gi|30693557|ref|NP_174971.2| UniGene infoGene info unknown protein [Arabidopsis thaliana]
Length=435

 Score = 30.4 bits (67),  Expect = 3.8
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
 Frame = +2

Query  68   WYEAWWGSHAKFLCTDGSARPAG---SASWWQKGWG  166
            WYE WW  +     T+  A   G     SWW+K WG
Sbjct  250  WYEKWWEKYDAKGWTEKGAHKYGRLNEQSWWEK-WG  284


>gi|53791704|dbj|BAD53299.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=145

 Score = 30.0 bits (66),  Expect = 4.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
 Frame = +2

Query  116  GSARPAGSASWWQKGWGCSAKSATGSINAAADATPRAGLSLSTRAW  253
            G   P GS+       G +A +A   ++ AA ATPRA L+ + R W
Sbjct  24   GGHPPRGSS-------GATAAAAAPRVDPAATATPRADLAAALRRW  62


>gi|115450547|ref|NP_001048874.1| Gene info Os03g0133300 [Oryza sativa (japonica cultivar-group)]
 gi|113547345|dbj|BAF10788.1| Gene info Os03g0133300 [Oryza sativa (japonica cultivar-group)]
Length=371

 Score = 29.3 bits (64),  Expect = 8.4
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
 Frame = +2

Query  68   WYEAWWGSHAKFLCTDGSARPAG---SASWWQKGWG  166
            WYE WW  +     T+  A   G     SWW++ WG
Sbjct  190  WYEKWWEKYDAKGWTEKGAHKYGRLNEQSWWER-WG  224


>gi|62751085|dbj|BAD95790.1| UniGene infoGene info similar to aquaporin [Solanum lycopersicum]
Length=250

 Score = 29.3 bits (64),  Expect = 8.4
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
 Frame = +1

Query  127  ASRVSVLVAEGLGLFSKVSNRFH*CSSRCYPE-------GGSIVIHQGVVYLMFQCLM*A  285
            A  +S  +A   GLF  VS   +       P        GG+I + +G++Y++ Q L   
Sbjct  55   AGLISASIAHAFGLFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGILYIIAQLLGST  114

Query  286  GGMLSVPYDMGGMPMRDVPLSQPIPI  363
                 + +  GGM      LS  + +
Sbjct  115  AACALLEFATGGMSTGSFALSAGVSV  140


>gi|22758282|gb|AAN05510.1|  Hypothetical protein [Oryza sativa (japonica cultivar-group)]
 gi|108706037|gb|ABF93832.1|  expressed protein [Oryza sativa (japonica cultivar-group)]
Length=431

 Score = 29.3 bits (64),  Expect = 8.4
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
 Frame = +2

Query  68   WYEAWWGSHAKFLCTDGSARPAG---SASWWQKGWG  166
            WYE WW  +     T+  A   G     SWW++ WG
Sbjct  250  WYEKWWEKYDAKGWTEKGAHKYGRLNEQSWWER-WG  284


>gi|47848361|dbj|BAD22221.1| Gene info hypothetical protein [Oryza sativa (japonica cultivar-group)]
 gi|47848416|dbj|BAD22274.1| Gene info hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=124

 Score = 29.3 bits (64),  Expect = 8.4
 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = +2

Query  83   WGSHAKFLCTDGSARPAGSASWWQKGWGCSAKSATGSINAAADATPRA  226
            WG  A +L T G  R  G   WW  G G  A      + AAA   PRA
Sbjct  37   WGRAATWL-TVGKER--GRRRWWGGGGGGGAAGGRRGVEAAAAKMPRA  81







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 281
Number of extensions: 6
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 521
Length of database: 101054579
Length adjustment: 105
Effective length of query: 416
Effective length of database: 71302934
Effective search space: 4848599512
Effective search space used: 4848599512
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 63 (28.9 bits)