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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168940765-18601-84226222116.BLASTQ4


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,458,890 sequences; 1,532,996,420 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig163
Length=280

Distribution of 5 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|15219147|ref|NP_173069.1|  unknown protein [Arabidopsis tha...  45.8    4e-05 UniGene infoGene info
gi|115449169|ref|NP_001048364.1|  Os02g0792900 [Oryza sativa (...  38.9    0.005 Gene info
gi|42563541|ref|NP_187268.2|  unknown protein [Arabidopsis tha...  36.6    0.027 UniGene infoGene info
gi|108709225|gb|ABF97020.1|  TMS membrane family protein, puta...  35.0    0.079
gi|115453751|ref|NP_001050476.1|  Os03g0454100 [Oryza sativa (...  35.0    0.079 Gene info
Alignments

>gi|15219147|ref|NP_173069.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
 gi|6587821|gb|AAF18512.1|AC010924_25 Gene info Contains similarity to gb|AF181686 membrane protein TMS1d from 
Drosophila melanogaster.  ESTs gb|R64994, gb|AI994832, gb|Z47674 
come from this gene. [Arabidopsis thaliana]
Length=412

 Score = 45.8 bits (107),  Expect = 4e-05
 Identities = 22/22 (100%), Positives = 22/22 (100%), Gaps = 0/22 (0%)
 Frame = +3

Query  213  RTVVSGISRRSARIAYCGLFAL  278
            RTVVSGISRRSARIAYCGLFAL
Sbjct  20   RTVVSGISRRSARIAYCGLFAL  41


>gi|115449169|ref|NP_001048364.1| Gene info Os02g0792900 [Oryza sativa (japonica cultivar-group)]
 gi|47497137|dbj|BAD19186.1| Gene info putative tumor differentially expressed protein 1 [Oryza sativa 
(japonica cultivar-group)]
 gi|47497584|dbj|BAD19654.1| Gene info putative tumor differentially expressed protein 1 [Oryza sativa 
(japonica cultivar-group)]
 gi|113537895|dbj|BAF10278.1| Gene info Os02g0792900 [Oryza sativa (japonica cultivar-group)]
Length=414

 Score = 38.9 bits (89),  Expect = 0.005
 Identities = 18/22 (81%), Positives = 18/22 (81%), Gaps = 0/22 (0%)
 Frame = +3

Query  213  RTVVSGISRRSARIAYCGLFAL  278
            RT V  I RRSARIAYCGLFAL
Sbjct  20   RTAVGSIGRRSARIAYCGLFAL  41


>gi|42563541|ref|NP_187268.2| UniGene infoGene info unknown protein [Arabidopsis thaliana]
 gi|71143054|gb|AAZ23918.1| UniGene infoGene info At3g06170 [Arabidopsis thaliana]
Length=409

 Score = 36.6 bits (83),  Expect = 0.027
 Identities = 16/19 (84%), Positives = 18/19 (94%), Gaps = 0/19 (0%)
 Frame = +3

Query  216  TVVSGISRRSARIAYCGLF  272
            +V SGISR+SARIAYCGLF
Sbjct  19   SVASGISRKSARIAYCGLF  37


>gi|108709225|gb|ABF97020.1|  TMS membrane family protein, putative, expressed [Oryza sativa 
(japonica cultivar-group)]
Length=372

 Score = 35.0 bits (79),  Expect = 0.079
 Identities = 15/20 (75%), Positives = 18/20 (90%), Gaps = 0/20 (0%)
 Frame = +3

Query  216  TVVSGISRRSARIAYCGLFA  275
            + +S ISRRSAR+AYCGLFA
Sbjct  21   SALSAISRRSARLAYCGLFA  40


>gi|115453751|ref|NP_001050476.1| Gene info Os03g0454100 [Oryza sativa (japonica cultivar-group)]
 gi|29244652|gb|AAO73245.1| Gene info putative membrane protein [Oryza sativa (japonica cultivar-group)]
 gi|108709224|gb|ABF97019.1| Gene info TMS membrane family protein, putative, expressed [Oryza sativa 
(japonica cultivar-group)]
 gi|113548947|dbj|BAF12390.1| Gene info Os03g0454100 [Oryza sativa (japonica cultivar-group)]
Length=417

 Score = 35.0 bits (79),  Expect = 0.079
 Identities = 15/20 (75%), Positives = 18/20 (90%), Gaps = 0/20 (0%)
 Frame = +3

Query  216  TVVSGISRRSARIAYCGLFA  275
            + +S ISRRSAR+AYCGLFA
Sbjct  21   SALSAISRRSARLAYCGLFA  40







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 198
Number of extensions: 2
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 280
Length of database: 101054579
Length adjustment: 63
Effective length of query: 217
Effective length of database: 83203592
Effective search space: 2496107760
Effective search space used: 2496107760
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)