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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168940979-15518-7516196786.BLASTQ4


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,458,890 sequences; 1,532,996,420 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig167
Length=420

Distribution of 92 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|12620881|gb|AAG61120.1|  ribulose-1,5-bisphosphate carboxyl...  67.4    1e-24 UniGene info
gi|3914605|sp|Q40281|RCA_MALDO  Ribulose bisphosphate carboxyl...  65.1    1e-23
gi|115334977|gb|ABI94076.1|  chloroplast ribulose-1,5-bisphosp...  67.0    2e-23
gi|115334975|gb|ABI94075.1|  chloroplast ribulose-1,5-bisphosp...  67.0    2e-23
gi|115334981|gb|ABI94078.1|  chloroplast ribulose-1,5-bisphosp...  67.0    5e-23
gi|115334979|gb|ABI94077.1|  chloroplast ribulose-1,5-bisphosp...  67.0    5e-23
gi|10720248|sp|O64981|RCA_PHAVU  Ribulose bisphosphate carboxy...  62.4    3e-21
gi|10720249|sp|O98997|RCA_PHAAU  Ribulose bisphosphate carboxy...  62.4    6e-21
gi|68565782|sp|Q7X9A0|RCA1_LARTR  Ribulose bisphosphate carbox...  66.2    2e-20
gi|68565781|sp|Q7X999|RCA2_LARTR  Ribulose bisphosphate carbox...  66.2    2e-20
gi|3687652|gb|AAC62207.1|  rubisco activase precursor [Datisca gl  61.6    8e-20
gi|23308421|gb|AAN18180.1|  At2g39730/T5I7.3 [Arabidopsis thalian  66.2    1e-18 UniGene info
gi|15450379|gb|AAK96483.1|  At2g39730/T5I7.3 [Arabidopsis thalian  66.2    1e-18 UniGene info
gi|18405145|ref|NP_565913.1|  RCA (RUBISCO ACTIVASE) [Arabidop...  66.2    1e-18 UniGene infoGene info
gi|16471|emb|CAA32429.1|  unnamed protein product [Arabidopsis th  66.2    1e-18 UniGene info
gi|30687995|ref|NP_850320.1|  RCA (RUBISCO ACTIVASE) [Arabidop...  66.2    1e-18 UniGene infoGene info
gi|30687999|ref|NP_850321.1|  RCA (RUBISCO ACTIVASE) [Arabidopsis  66.2    1e-18 UniGene infoGene info
gi|266893|sp|Q01587|RCA_CUCSA  Ribulose bisphosphate carboxyla...  61.6    5e-18
gi|12643757|sp|Q40460|RCA1_TOBAC  Ribulose bisphosphate carbox...  60.5    4e-17
gi|92874675|gb|ABE82905.1|  AAA ATPase, central region; Homeod...  60.1    1e-16
gi|12643758|sp|Q40565|RCA2_TOBAC  Ribulose bisphosphate carbox...  55.1    2e-15
gi|10720247|sp|O49074|RCA_LYCPN  Ribulose bisphosphate carboxy...  52.4    1e-14
gi|170129|gb|AAA34038.1|  rubisco activase precursor               48.1    2e-13
gi|12643998|sp|P10871|RCA_SPIOL  Ribulose bisphosphate carboxy...  48.1    2e-13
gi|4261547|gb|AAD13841.1|S45033_11  rubisco activase [Spinacia ol  48.1    2e-13
gi|21950712|gb|AAM78591.1|  rubisco activase [Chenopodium quinoa]  48.1    3e-13
gi|12620883|gb|AAG61121.1|AF329935_1  ribulose-1,5-bisphosphat...  64.7    3e-12 UniGene info
gi|92875540|gb|ABE83482.1|  AAA ATPase, central region; Homeod...  66.6    3e-11
gi|29429152|sp|Q9ZT00|RCA_MAIZE  Ribulose bisphosphate carboxy...  66.2    4e-11 Gene info
gi|78100212|gb|ABB20913.1|  ribulose-1,5-bisphosphate carboxyl...  64.7    1e-10 UniGene info
gi|32481061|gb|AAP83927.1|  Rubisco activase alpha form precursor  63.2    3e-10
gi|32481063|gb|AAP83928.1|  Rubisco activase beta form precursor   63.2    3e-10
gi|7960277|gb|AAF71272.1|AF251264_1  ribulose bisphosphate car...  63.2    3e-10 UniGene infoGene info
gi|10720253|sp|Q42450|RCAB_HORVU  Ribulose bisphosphate carbox...  63.2    3e-10 Gene info
gi|108864713|gb|ABG22614.1|  Ribulose bisphosphate carboxylase...  62.8    4e-10
gi|62733297|gb|AAX95414.1|  RuBisCO activase small isoform pre...  62.8    4e-10
gi|109940135|sp|P93431|RCA_ORYSA  Ribulose bisphosphate carbox...  62.8    4e-10
gi|1778414|gb|AAC28134.1|  ribulose-1,5-bisphosphate carboxyla...  62.8    4e-10 UniGene info
gi|115486823|ref|NP_001068555.1|  Os11g0707000 [Oryza sativa (...  62.8    4e-10 Gene info
gi|115486825|ref|NP_001068556.1|  Os11g0707100 [Oryza sativa (...  62.0    7e-10 Gene info
gi|167096|gb|AAA63163.1|  ribulose 1,5-bisphosphate carboxylas...  60.8    2e-09
gi|12643756|sp|Q40073|RCAA_HORVU  Ribulose bisphosphate carbox...  60.8    2e-09
gi|445628|prf||1909374A  RuBisCO activase                          60.5    2e-09
gi|100615|pir||C23703  ribulose-bisphosphate carboxylase activ...  57.4    2e-08
gi|100614|pir||B23703  ribulose-bisphosphate carboxylase activ...  57.4    2e-08
gi|13430332|gb|AAK25798.1|AF338237_1  rubisco activase [Zantedesc  55.8    5e-08
gi|13430338|gb|AAK25801.1|AF338240_1  rubisco activase [Zantedesc  55.8    5e-08
gi|13430336|gb|AAK25800.1|AF338239_1  rubisco activase [Zantedesc  55.8    5e-08
gi|116057240|emb|CAL51667.1|  RuBisCO activase (IC) [Ostreococcus  47.0    2e-05
gi|1805719|emb|CAA71667.1|  Rubisco activase [Chlorococcum littor  46.6    3e-05
gi|38532373|gb|AAR23425.1|  rubisco activase [Chlamydomonas reinh  41.2    0.001
gi|132167|sp|P23489|RCA_CHLRE  Ribulose bisphosphate carboxyla...  41.2    0.001
gi|6967045|emb|CAB72439.1|  rubisco activase [Pinus halepensis]    36.2    0.040
gi|15221682|ref|NP_173826.1|  unknown protein [Arabidopsis tha...  31.6    0.98  UniGene infoGene info
gi|20161062|dbj|BAB89993.1|  hypothetical protein [Oryza sativ...  31.2    1.3  
gi|115456063|ref|NP_001051632.1|  Os03g0805800 [Oryza sativa (...  30.8    1.7   Gene info
gi|19225007|gb|AAL86483.1|AC077693_22  hypothetical protein [O...  30.0    2.9   Gene info
gi|2995462|emb|CAA76555.1|  G-box binding protein [Sinapis alba]   30.0    2.9  
gi|46394342|tpg|DAA05109.1|  TPA: TPA_inf: WRKY transcription ...  29.3    4.9  
gi|1478008|gb|AAB36380.1|  gibberellin A-binding protein, GABP...  29.3    4.9  
gi|50511373|gb|AAT77296.1|  hypothetical protein [Oryza sativa (j  28.9    6.4  
gi|15227011|ref|NP_178368.1|  unknown protein [Arabidopsis tha...  28.9    6.4   UniGene infoGene info
gi|92918540|gb|ABE96720.1|  hypothetical protein MtrDRAFT_AC14...  28.5    8.3
Alignments

>gi|12620881|gb|AAG61120.1| UniGene info ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 [Gossypium 
hirsutum]
Length=438

 Score = 67.4 bits (163),  Expect(2) = 1e-24
 Identities = 48/66 (72%), Positives = 58/66 (87%), Gaps = 1/66 (1%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLNgsgagaavpssaFLGSSLKKVSSRFSNS-KLPSVSFKVVAS  266
            MAAAVSTIGAVNRAPLSLNGSGAGA+ PSSAF+G+SLKKVS+RF+N+ K P  SFK+VA+
Sbjct  1    MAAAVSTIGAVNRAPLSLNGSGAGASAPSSAFMGNSLKKVSARFNNNGKAPVGSFKIVAA  60

Query  267  TESTDE  284
             E  ++
Sbjct  61   KEIDED  66


 Score = 64.7 bits (156),  Expect(2) = 1e-24
 Identities = 28/35 (80%), Positives = 32/35 (91%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            +TD+D+W+GLAYD SDDQQDITRGKGMVDSLF  P
Sbjct  68   QTDQDRWKGLAYDISDDQQDITRGKGMVDSLFQAP  102


>gi|3914605|sp|Q40281|RCA_MALDO  Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast 
precursor (RuBisCO activase) (RA)
 gi|415852|emb|CAA79857.1| UniGene info ribulose-1,5-bisphosphate carboxylase/oxygenase activase [Malus 
x domestica]
Length=437

 Score = 65.1 bits (157),  Expect(2) = 1e-23
 Identities = 42/61 (68%), Positives = 52/61 (85%), Gaps = 0/61 (0%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLNgsgagaavpssaFLGSSLKKVSSRFSNSKLPSVSFKVVAST  269
            MA AVSTIG+VNRAP +LNGS + A+VPSS FLGSSLKKV+SRF+NSK+ S S ++VAS 
Sbjct  1    MATAVSTIGSVNRAPPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASV  60

Query  270  E  272
            +
Sbjct  61   D  61


 Score = 63.5 bits (153),  Expect(2) = 1e-23
 Identities = 28/42 (66%), Positives = 34/42 (80%), Gaps = 0/42 (0%)
 Frame = +1

Query  274  APMKKXVKTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            A + +  +TDKD+W+GLA+D SDDQQDITRGKG VDSLF  P
Sbjct  58   ASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAP  99


>gi|115334977|gb|ABI94076.1|  chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase activase 
large protein isoform [Acer rubrum]
Length=474

 Score = 67.0 bits (162),  Expect(2) = 2e-23
 Identities = 30/42 (71%), Positives = 35/42 (83%), Gaps = 0/42 (0%)
 Frame = +1

Query  274  APMKKXVKTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            A + +  +T+KDKWRGLAYD SDDQQDITRGKG+VDSLF  P
Sbjct  59   AEIDENKQTEKDKWRGLAYDTSDDQQDITRGKGLVDSLFQAP  100


 Score = 60.5 bits (145),  Expect(2) = 2e-23
 Identities = 39/66 (59%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLNgsgagaavpssa-FLGSSLKKVSSRFSNSKLPSVSFKVVAS  266
            MAAAVST+GA+N APLSLNGSGA  +   ++ F G+SLKKV+SRF N K+ S SFKVVA 
Sbjct  1    MAAAVSTVGAINSAPLSLNGSGAAGSTVPTSAFFGTSLKKVASRFPNPKVHSGSFKVVAE  60

Query  267  TESTDE  284
             +   +
Sbjct  61   IDENKQ  66


>gi|115334975|gb|ABI94075.1|  chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase activase 
small protein isoform [Acer rubrum]
Length=437

 Score = 67.0 bits (162),  Expect(2) = 2e-23
 Identities = 30/42 (71%), Positives = 35/42 (83%), Gaps = 0/42 (0%)
 Frame = +1

Query  274  APMKKXVKTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            A + +  +T+KDKWRGLAYD SDDQQDITRGKG+VDSLF  P
Sbjct  59   AEIDENKQTEKDKWRGLAYDTSDDQQDITRGKGLVDSLFQAP  100


 Score = 60.5 bits (145),  Expect(2) = 2e-23
 Identities = 39/66 (59%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLNgsgagaavpssa-FLGSSLKKVSSRFSNSKLPSVSFKVVAS  266
            MAAAVST+GA+N APLSLNGSGA  +   ++ F G+SLKKV+SRF N K+ S SFKVVA 
Sbjct  1    MAAAVSTVGAINSAPLSLNGSGAAGSTVPTSAFFGTSLKKVASRFPNPKVHSGSFKVVAE  60

Query  267  TESTDE  284
             +   +
Sbjct  61   IDENKQ  66


>gi|115334981|gb|ABI94078.1|  chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase activase 
large protein isoform [Acer rubrum]
Length=474

 Score = 67.0 bits (162),  Expect(2) = 5e-23
 Identities = 30/42 (71%), Positives = 35/42 (83%), Gaps = 0/42 (0%)
 Frame = +1

Query  274  APMKKXVKTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            A + +  +T+KDKWRGLAYD SDDQQDITRGKG+VDSLF  P
Sbjct  59   AEIDENKQTEKDKWRGLAYDTSDDQQDITRGKGLVDSLFQAP  100


 Score = 59.3 bits (142),  Expect(2) = 5e-23
 Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLNgsgagaavpssa-FLGSSLKKVSSRFSNSKLPSVSFKVVAS  266
            MAAAVST+G VN APLSLNGSGA  +   ++ F G+SLKKV+SRF N K+ S SFKVVA 
Sbjct  1    MAAAVSTVGTVNSAPLSLNGSGAAGSTVPTSAFFGTSLKKVASRFPNPKVHSGSFKVVAE  60

Query  267  TESTDE  284
             +   +
Sbjct  61   IDENKQ  66


>gi|115334979|gb|ABI94077.1|  chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase activase 
small protein isoform [Acer rubrum]
Length=437

 Score = 67.0 bits (162),  Expect(2) = 5e-23
 Identities = 30/42 (71%), Positives = 35/42 (83%), Gaps = 0/42 (0%)
 Frame = +1

Query  274  APMKKXVKTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            A + +  +T+KDKWRGLAYD SDDQQDITRGKG+VDSLF  P
Sbjct  59   AEIDENKQTEKDKWRGLAYDTSDDQQDITRGKGLVDSLFQAP  100


 Score = 59.3 bits (142),  Expect(2) = 5e-23
 Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLNgsgagaavpssa-FLGSSLKKVSSRFSNSKLPSVSFKVVAS  266
            MAAAVST+G VN APLSLNGSGA  +   ++ F G+SLKKV+SRF N K+ S SFKVVA 
Sbjct  1    MAAAVSTVGTVNSAPLSLNGSGAAGSTVPTSAFFGTSLKKVASRFPNPKVHSGSFKVVAE  60

Query  267  TESTDE  284
             +   +
Sbjct  61   IDENKQ  66


>gi|10720248|sp|O64981|RCA_PHAVU  Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast 
precursor (RuBisCO activase) (RA)
 gi|3033513|gb|AAC12868.1|  rubisco activase [Phaseolus vulgaris]
Length=441

 Score = 62.4 bits (150),  Expect(2) = 3e-21
 Identities = 27/35 (77%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            +T+ D+WRGLAYD SDDQQDITRGKG+VDSLF  P
Sbjct  69   QTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAP  103


 Score = 57.8 bits (138),  Expect(2) = 3e-21
 Identities = 43/66 (65%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLNgsgagaavpssaFLGSSLKKV-SSRFSNSKLPSVSFKVVAS  266
            MAA++ST+GAVNR  L+LNGSG GA+ PSSAF G+SLKKV SSR  NSKL S SFK+VA+
Sbjct  1    MAASLSTVGAVNRTLLNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAA  60

Query  267  TESTDE  284
             +  +E
Sbjct  61   DKEIEE  66


>gi|10720249|sp|O98997|RCA_PHAAU  Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast 
precursor (RuBisCO activase) (RA)
 gi|8954287|gb|AAD20019.2|  rubisco activase [Vigna radiata]
Length=439

 Score = 62.4 bits (150),  Expect(2) = 6e-21
 Identities = 27/35 (77%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            +T+KD+W+GLAYD SDDQQDITRGKGMVD LF  P
Sbjct  69   QTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAP  103


 Score = 57.0 bits (136),  Expect(2) = 6e-21
 Identities = 42/66 (63%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLNgsgagaavpssaFLGSSLKK-VSSRFSNSKLPSVSFKVVAS  266
            MAA+VST+GAVNRA L+LNGSGAGA+ P+SAF G+SLKK V+SR  NSK+ + SFK+VA+
Sbjct  1    MAASVSTVGAVNRAILNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAA  60

Query  267  TESTDE  284
             +  +E
Sbjct  61   EKEIEE  66


>gi|68565782|sp|Q7X9A0|RCA1_LARTR  Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast 
precursor (RuBisCO activase 1) (RA 1) (RuBisCO activase 
alpha form)
 gi|32481065|gb|AAP83929.1|  Rubisco activase alpha form precursor [Larrea tridentata]
Length=476

 Score = 66.2 bits (160),  Expect(2) = 2e-20
 Identities = 29/35 (82%), Positives = 32/35 (91%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            +TDKDKW+GLAYD SDDQQDITRGKGMVD+LF  P
Sbjct  65   QTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAP  99


 Score = 51.6 bits (122),  Expect(2) = 2e-20
 Identities = 37/67 (55%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLN-gsgagaavpssaFLGSSLKKVSSRFSNSKLPSVSFKVVAS  266
            MAAA ST+GAVNRAPLSLN      + VPS+AF GSSLKK +++F   K  S +FK+VA 
Sbjct  1    MAAAYSTVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKF--PKASSGNFKIVAQ  58

Query  267  TESTDEE  287
              S D++
Sbjct  59   EISEDQQ  65


>gi|68565781|sp|Q7X999|RCA2_LARTR  Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplast 
precursor (RuBisCO activase 2) (RA 2) (RuBisCO activase 
beta form)
 gi|32481067|gb|AAP83930.1|  Rubisco activase beta form precursor [Larrea tridentata]
Length=435

 Score = 66.2 bits (160),  Expect(2) = 2e-20
 Identities = 29/35 (82%), Positives = 32/35 (91%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            +TDKDKW+GLAYD SDDQQDITRGKGMVD+LF  P
Sbjct  65   QTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAP  99


 Score = 51.6 bits (122),  Expect(2) = 2e-20
 Identities = 37/67 (55%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLN-gsgagaavpssaFLGSSLKKVSSRFSNSKLPSVSFKVVAS  266
            MAAA ST+GAVNRAPLSLN      + VPS+AF GSSLKK +++F   K  S +FK+VA 
Sbjct  1    MAAAYSTVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKF--PKASSGNFKIVAQ  58

Query  267  TESTDEE  287
              S D++
Sbjct  59   EISEDQQ  65


>gi|3687652|gb|AAC62207.1|  rubisco activase precursor [Datisca glomerata]
Length=373

 Score = 61.6 bits (148),  Expect(2) = 8e-20
 Identities = 27/35 (77%), Positives = 30/35 (85%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            +T KD+W GLA+D SDDQQDITRGKGMVDSLF  P
Sbjct  66   QTSKDRWGGLAFDTSDDQQDITRGKGMVDSLFQAP  100


 Score = 53.9 bits (128),  Expect(2) = 8e-20
 Identities = 34/72 (47%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
 Frame = +3

Query  93   AAAVSTIGAVNRAPLSLNgsgagaavpssaFLGSSLKKVSSRFSNSKLPSVSFKVVASTE  272
            ++AVSTIGAVNR+PL+LN +G G  +P++AF GSSLKK++SR +N ++ + + K VA  +
Sbjct  3    SSAVSTIGAVNRSPLNLNNNGTGGLLPNTAFFGSSLKKMNSRLTNPRIAAGNIKAVAD-D  61

Query  273  STDEEXC*DRQG  308
              +++   DR G
Sbjct  62   DEEKQTSKDRWG  73


>gi|23308421|gb|AAN18180.1| UniGene info At2g39730/T5I7.3 [Arabidopsis thaliana]
Length=474

 Score = 66.2 bits (160),  Expect(2) = 1e-18
 Identities = 31/47 (65%), Positives = 36/47 (76%), Gaps = 0/47 (0%)
 Frame = +1

Query  280  MKKXVKTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGPP*TMXTH  420
            +K+  +TD D+WRGLAYD SDDQQDITRGKGMVDS+F  P  T   H
Sbjct  60   VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHH  106


 Score = 45.4 bits (106),  Expect(2) = 1e-18
 Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLN-gsgagaavpssaFLGSSLKKVSSRFSNSKLPSVSFKVVAS  266
            MAAAVST+GA+NRAPLSLN       + P+S FLG  +  VS    ++K  + SFKV+A 
Sbjct  1    MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLAV  60

Query  267  TE  272
             E
Sbjct  61   KE  62


>gi|15450379|gb|AAK96483.1| UniGene info At2g39730/T5I7.3 [Arabidopsis thaliana]
Length=474

 Score = 66.2 bits (160),  Expect(2) = 1e-18
 Identities = 31/47 (65%), Positives = 36/47 (76%), Gaps = 0/47 (0%)
 Frame = +1

Query  280  MKKXVKTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGPP*TMXTH  420
            +K+  +TD D+WRGLAYD SDDQQDITRGKGMVDS+F  P  T   H
Sbjct  60   VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHH  106


 Score = 45.4 bits (106),  Expect(2) = 1e-18
 Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLN-gsgagaavpssaFLGSSLKKVSSRFSNSKLPSVSFKVVAS  266
            MAAAVST+GA+NRAPLSLN       + P+S FLG  +  VS    ++K  + SFKV+A 
Sbjct  1    MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLAV  60

Query  267  TE  272
             E
Sbjct  61   KE  62


>gi|18405145|ref|NP_565913.1| UniGene infoGene info RCA (RUBISCO ACTIVASE) [Arabidopsis thaliana]
 gi|12643259|sp|P10896|RCA_ARATH Gene info Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast 
precursor (RuBisCO activase) (RA)
 gi|11762250|gb|AAG40401.1|AF325049_1 UniGene infoGene info At2g39730 [Arabidopsis thaliana]
 gi|166834|gb|AAA20202.1| Gene info ribulose bisphosphate carboxylase/oxygenase activase
 gi|2642155|gb|AAB87122.1| Gene info expressed protein [Arabidopsis thaliana]
 gi|15810188|gb|AAL06995.1| UniGene infoGene info At2g39730/T5I7.3_ [Arabidopsis thaliana]
 gi|21594581|gb|AAM66023.1| UniGene infoGene info unknown [Arabidopsis thaliana]
Length=474

 Score = 66.2 bits (160),  Expect(2) = 1e-18
 Identities = 31/47 (65%), Positives = 36/47 (76%), Gaps = 0/47 (0%)
 Frame = +1

Query  280  MKKXVKTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGPP*TMXTH  420
            +K+  +TD D+WRGLAYD SDDQQDITRGKGMVDS+F  P  T   H
Sbjct  60   VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHH  106


 Score = 45.4 bits (106),  Expect(2) = 1e-18
 Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLN-gsgagaavpssaFLGSSLKKVSSRFSNSKLPSVSFKVVAS  266
            MAAAVST+GA+NRAPLSLN       + P+S FLG  +  VS    ++K  + SFKV+A 
Sbjct  1    MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLAV  60

Query  267  TE  272
             E
Sbjct  61   KE  62


>gi|16471|emb|CAA32429.1| UniGene info unnamed protein product [Arabidopsis thaliana]
Length=473

 Score = 66.2 bits (160),  Expect(2) = 1e-18
 Identities = 31/47 (65%), Positives = 36/47 (76%), Gaps = 0/47 (0%)
 Frame = +1

Query  280  MKKXVKTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGPP*TMXTH  420
            +K+  +TD D+WRGLAYD SDDQQDITRGKGMVDS+F  P  T   H
Sbjct  60   VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHH  106


 Score = 45.4 bits (106),  Expect(2) = 1e-18
 Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLN-gsgagaavpssaFLGSSLKKVSSRFSNSKLPSVSFKVVAS  266
            MAAAVST+GA+NRAPLSLN       + P+S FLG  +  VS    ++K  + SFKV+A 
Sbjct  1    MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLAV  60

Query  267  TE  272
             E
Sbjct  61   KE  62


>gi|30687995|ref|NP_850320.1| UniGene infoGene info RCA (RUBISCO ACTIVASE) [Arabidopsis thaliana]
 gi|7438144|pir||T01003  ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) T5I7.3, 
splice form 2 - Arabidopsis thaliana
 gi|166835|gb|AAA20203.1| Gene info ribulose bisphosphate carboxylase/oxygenase activase
 gi|15450671|gb|AAK96607.1| UniGene infoGene info At2g39730/T5I7.3 [Arabidopsis thaliana]
 gi|23397139|gb|AAN31853.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
Length=446

 Score = 66.2 bits (160),  Expect(2) = 1e-18
 Identities = 31/47 (65%), Positives = 36/47 (76%), Gaps = 0/47 (0%)
 Frame = +1

Query  280  MKKXVKTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGPP*TMXTH  420
            +K+  +TD D+WRGLAYD SDDQQDITRGKGMVDS+F  P  T   H
Sbjct  60   VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHH  106


 Score = 45.4 bits (106),  Expect(2) = 1e-18
 Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLN-gsgagaavpssaFLGSSLKKVSSRFSNSKLPSVSFKVVAS  266
            MAAAVST+GA+NRAPLSLN       + P+S FLG  +  VS    ++K  + SFKV+A 
Sbjct  1    MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLAV  60

Query  267  TE  272
             E
Sbjct  61   KE  62


>gi|30687999|ref|NP_850321.1| UniGene infoGene info RCA (RUBISCO ACTIVASE) [Arabidopsis thaliana]
Length=441

 Score = 66.2 bits (160),  Expect(2) = 1e-18
 Identities = 31/47 (65%), Positives = 36/47 (76%), Gaps = 0/47 (0%)
 Frame = +1

Query  280  MKKXVKTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGPP*TMXTH  420
            +K+  +TD D+WRGLAYD SDDQQDITRGKGMVDS+F  P  T   H
Sbjct  60   VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHH  106


 Score = 45.4 bits (106),  Expect(2) = 1e-18
 Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLN-gsgagaavpssaFLGSSLKKVSSRFSNSKLPSVSFKVVAS  266
            MAAAVST+GA+NRAPLSLN       + P+S FLG  +  VS    ++K  + SFKV+A 
Sbjct  1    MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLAV  60

Query  267  TE  272
             E
Sbjct  61   KE  62


>gi|266893|sp|Q01587|RCA_CUCSA  Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast 
precursor (RuBisCO activase) (RA)
 gi|18284|emb|CAA47906.1|  rubisco activase [Cucumis sativus]
Length=413

 Score = 61.6 bits (148),  Expect(2) = 5e-18
 Identities = 26/35 (74%), Positives = 30/35 (85%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            +T+KDKWRGLA+D SDDQQDITRGKG+ D LF  P
Sbjct  62   QTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAP  96


 Score = 47.8 bits (112),  Expect(2) = 5e-18
 Identities = 37/61 (60%), Positives = 45/61 (73%), Gaps = 3/61 (4%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLNgsgagaavpssaFLGSSLKKVSSRFSNSKLPSVSFKVVAST  269
            MAA VSTIGAVNR   +LN S  G  VP+SAFLGS LK VSSRF+ SK+ + +FK+VA  
Sbjct  1    MAATVSTIGAVNRT--TLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAEQ  57

Query  270  E  272
            +
Sbjct  58   D  58


>gi|12643757|sp|Q40460|RCA1_TOBAC  Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast 
precursor (RuBisCO activase 1) (RA 1)
 gi|1006835|gb|AAA78277.1| UniGene info rubisco activase precursor
Length=442

 Score = 60.5 bits (145),  Expect(2) = 4e-17
 Identities = 28/42 (66%), Positives = 31/42 (73%), Gaps = 0/42 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGPP*TMXTH  420
            +TD D+W+GL  D SDDQQDITRGKGMVDSLF  P  T   H
Sbjct  69   QTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHH  110


 Score = 45.8 bits (107),  Expect(2) = 4e-17
 Identities = 34/65 (52%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLNgsgagaavpssaFLGSSLKKVSSR-FSNSKLPSVSFKVVAS  266
            MA +VSTIGAVN+ PLSLN S AG +VPS+AF G +LKKV  +  S+ K+ + S ++VA 
Sbjct  1    MATSVSTIGAVNKTPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAE  60

Query  267  TESTD  281
                D
Sbjct  61   QIDVD  65


>gi|92874675|gb|ABE82905.1|  AAA ATPase, central region; Homeodomain-like [Medicago truncatula]
Length=476

 Score = 60.1 bits (144),  Expect(2) = 1e-16
 Identities = 26/35 (74%), Positives = 29/35 (82%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            +T KD+W GLAYD SDDQQDITRGKG VDS+F  P
Sbjct  67   QTSKDRWAGLAYDTSDDQQDITRGKGKVDSVFQAP  101


 Score = 44.7 bits (104),  Expect(2) = 1e-16
 Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 0/66 (0%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLNgsgagaavpssaFLGSSLKKVSSRFSNSKLPSVSFKVVAST  269
            MA +V+ +GA+N A L LNGS +G  + +SAF G+SLKK  S  S+ K  S +FKV A  
Sbjct  1    MATSVTIVGAINMAQLKLNGSSSGVPMTNSAFFGTSLKKARSAISSQKSLSGNFKVSAKI  60

Query  270  ESTDEE  287
            +  +E+
Sbjct  61   DYNEEK  66


>gi|12643758|sp|Q40565|RCA2_TOBAC  Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplast 
precursor (RuBisCO activase 2) (RA 2)
 gi|19990|emb|CAA78703.1| UniGene info ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length=439

 Score = 55.1 bits (131),  Expect(2) = 2e-15
 Identities = 26/42 (61%), Positives = 29/42 (69%), Gaps = 0/42 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGPP*TMXTH  420
            +T  D+W+GL  D SDDQQDI RGKGMVDSLF  P  T   H
Sbjct  69   QTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHH  110


 Score = 45.4 bits (106),  Expect(2) = 2e-15
 Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLNgsgagaavpssaFLGSSLKKVSSR-FSNSKLPSVSFKVVAS  266
            MA +VSTIGA N+APLSLN S AG +VPS+AF G +LKKV  +  S+ K+ + S ++ A 
Sbjct  1    MATSVSTIGAANKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAE  60

Query  267  TESTD  281
             +  D
Sbjct  61   EKDAD  65


>gi|10720247|sp|O49074|RCA_LYCPN  Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast 
precursor (RuBisCO activase) (RA)
 gi|2707330|gb|AAC15236.1|  rubisco activase [Lycopersicon pennellii]
Length=459

 Score = 52.4 bits (124),  Expect(2) = 1e-14
 Identities = 24/42 (57%), Positives = 30/42 (71%), Gaps = 0/42 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGPP*TMXTH  420
            +T +D+W+GL  + SDDQQDI RGKG+VDSLF  P  T   H
Sbjct  64   ETKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHH  105


 Score = 45.4 bits (106),  Expect(2) = 1e-14
 Identities = 35/67 (52%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLNgsgagaavpssaFLGSSLKKVSSR-FSNSKLPSVSFKVVAS  266
            MAA+VSTIGA ++APLSLN S AG +VPS+AF G SLKKV ++  S+ K+ + + +VVA 
Sbjct  1    MAASVSTIGAASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQ  60

Query  267  TESTDEE  287
                 +E
Sbjct  61   EVDETKE  67


>gi|170129|gb|AAA34038.1|  rubisco activase precursor
Length=472

 Score = 48.1 bits (113),  Expect(2) = 2e-13
 Identities = 23/31 (74%), Positives = 23/31 (74%), Gaps = 0/31 (0%)
 Frame = +1

Query  307  DKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            DKW  LA D SDDQ DI RGKGMVDSLF  P
Sbjct  67   DKWAHLAKDFSDDQLDIRRGKGMVDSLFQAP  97


 Score = 45.8 bits (107),  Expect(2) = 2e-13
 Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLNgsgagaavpssaFLGSSLKK-VSSRF-SNSKLPSVSFKVVA  263
            MA AVST+GA  RAPL+LNGS AGA+VP+S FLGSSLKK  + RF S+S+  S++ K   
Sbjct  1    MATAVSTVGAATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSSSRTTSMTVKAAE  60

Query  264  STESTDEE  287
            + E   ++
Sbjct  61   NEEKNTDK  68


>gi|12643998|sp|P10871|RCA_SPIOL  Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast 
precursor (RuBisCO activase) (RA)
 gi|4261546|gb|AAD13840.1|S45033_1  ribulosebisphosphate carboxylase/oxygenase activase [Spinacia 
oleracea]
Length=472

 Score = 48.1 bits (113),  Expect(2) = 2e-13
 Identities = 23/31 (74%), Positives = 23/31 (74%), Gaps = 0/31 (0%)
 Frame = +1

Query  307  DKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            DKW  LA D SDDQ DI RGKGMVDSLF  P
Sbjct  67   DKWAHLAKDFSDDQLDIRRGKGMVDSLFQAP  97


 Score = 45.8 bits (107),  Expect(2) = 2e-13
 Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLNgsgagaavpssaFLGSSLKK-VSSRF-SNSKLPSVSFKVVA  263
            MA AVST+GA  RAPL+LNGS AGA+VP+S FLGSSLKK  + RF S+S+  S++ K   
Sbjct  1    MATAVSTVGAATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSSSRTTSMTVKAAE  60

Query  264  STESTDEE  287
            + E   ++
Sbjct  61   NEEKNTDK  68


>gi|4261547|gb|AAD13841.1|S45033_11  rubisco activase [Spinacia oleracea]
Length=435

 Score = 48.1 bits (113),  Expect(2) = 2e-13
 Identities = 23/31 (74%), Positives = 23/31 (74%), Gaps = 0/31 (0%)
 Frame = +1

Query  307  DKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            DKW  LA D SDDQ DI RGKGMVDSLF  P
Sbjct  67   DKWAHLAKDFSDDQLDIRRGKGMVDSLFQAP  97


 Score = 45.8 bits (107),  Expect(2) = 2e-13
 Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLNgsgagaavpssaFLGSSLKK-VSSRF-SNSKLPSVSFKVVA  263
            MA AVST+GA  RAPL+LNGS AGA+VP+S FLGSSLKK  + RF S+S+  S++ K   
Sbjct  1    MATAVSTVGAATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSSSRTTSMTVKAAE  60

Query  264  STESTDEE  287
            + E   ++
Sbjct  61   NEEKNTDK  68


>gi|21950712|gb|AAM78591.1|  rubisco activase [Chenopodium quinoa]
Length=438

 Score = 48.1 bits (113),  Expect(2) = 3e-13
 Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 0/42 (0%)
 Frame = +1

Query  274  APMKKXVKTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            A  ++  +++ D+W  LA D SDDQ DI RGKGMVDSLF  P
Sbjct  59   ADYEESKQSNTDRWAHLATDISDDQLDIRRGKGMVDSLFQAP  100


 Score = 45.1 bits (105),  Expect(2) = 3e-13
 Identities = 39/64 (60%), Positives = 48/64 (75%), Gaps = 2/64 (3%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLNgsgagaavpssaFLGSSLKK-VSSRF-SNSKLPSVSFKVVA  263
            MA AVST+GA  +APL+LNGS AGA+VP+SAFLGSSLKK  S RF S+S+  S++ K   
Sbjct  1    MATAVSTVGAATKAPLNLNGSSAGASVPTSAFLGSSLKKHTSVRFPSSSRASSMTVKAAD  60

Query  264  STES  275
              ES
Sbjct  61   YEES  64


>gi|12620883|gb|AAG61121.1|AF329935_1 UniGene info ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 [Gossypium 
hirsutum]
Length=435

 Score = 64.7 bits (156),  Expect(2) = 3e-12
 Identities = 28/35 (80%), Positives = 32/35 (91%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            +T+KD+W+GLAYD SDDQQDITRGKGMVDSLF  P
Sbjct  26   QTEKDRWKGLAYDISDDQQDITRGKGMVDSLFQAP  60


 Score = 25.0 bits (53),  Expect(2) = 3e-12
 Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = +3

Query  219  FSNSK-LPSVSFKVVASTESTDEE  287
            F+N++ +PS SFKV+A+ +  DEE
Sbjct  1    FNNTRQVPSGSFKVMAAEKEIDEE  24


>gi|92875540|gb|ABE83482.1|  AAA ATPase, central region; Homeodomain-like [Medicago truncatula]
Length=476

 Score = 66.6 bits (161),  Expect = 3e-11
 Identities = 29/42 (69%), Positives = 35/42 (83%), Gaps = 0/42 (0%)
 Frame = +1

Query  274  APMKKXVKTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            A + +  +TDKD+WRGLAYD SDDQQDITRGKGMVD++F  P
Sbjct  59   AEINESKQTDKDRWRGLAYDTSDDQQDITRGKGMVDTVFQAP  100


 Score = 50.8 bits (120),  Expect = 2e-06
 Identities = 37/71 (52%), Positives = 51/71 (71%), Gaps = 0/71 (0%)
 Frame = +3

Query  90   MAAAVSTIGAVNRAPLSLNgsgagaavpssaFLGSSLKKVSSRFSNSKLPSVSFKVVAST  269
            M A+VS + AV+  PLSLN SGA A+VPSS+F G+SLKKV+SR  N+K+ S  FK+VA+ 
Sbjct  1    MVASVSAVRAVSGTPLSLNSSGAVASVPSSSFFGTSLKKVTSRLPNTKVSSGRFKIVAAE  60

Query  270  ESTDEEXC*DR  302
             +  ++   DR
Sbjct  61   INESKQTDKDR  71


>gi|29429152|sp|Q9ZT00|RCA_MAIZE Gene info Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast 
precursor (RuBisCO activase) (RA)
 gi|19855034|gb|AAC97932.3| UniGene infoGene info ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor 
[Zea mays]
Length=433

 Score = 66.2 bits (160),  Expect = 4e-11
 Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 4/66 (6%)
 Frame = +1

Query  214  QDSATASFHQ*ASRLLHQQKAPMKKXV----KTDKDKWRGLAYDESDDQQDITRGKGMVD  381
            Q SA  ++H  +S    + KA   K V    +TD+D+W+GLAYD SDDQQDITRGKG+VD
Sbjct  30   QVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVD  89

Query  382  SLFPGP  399
            +LF  P
Sbjct  90   NLFQAP  95


>gi|78100212|gb|ABB20913.1| UniGene info ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 
2 [Gossypium hirsutum]
Length=421

 Score = 64.7 bits (156),  Expect = 1e-10
 Identities = 28/35 (80%), Positives = 32/35 (91%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            +T+KD+W+GLAYD SDDQQDITRGKGMVDSLF  P
Sbjct  12   QTEKDRWKGLAYDISDDQQDITRGKGMVDSLFQAP  46


>gi|32481061|gb|AAP83927.1|  Rubisco activase alpha form precursor [Deschampsia antarctica]
Length=465

 Score = 63.2 bits (152),  Expect = 3e-10
 Identities = 28/35 (80%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            +TD DKW+GLAYD SDDQQDITRGKG+VDSLF  P
Sbjct  56   QTDGDKWKGLAYDISDDQQDITRGKGIVDSLFQAP  90


>gi|32481063|gb|AAP83928.1|  Rubisco activase beta form precursor [Deschampsia antarctica]
Length=428

 Score = 63.2 bits (152),  Expect = 3e-10
 Identities = 28/35 (80%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            +TD DKW+GLAYD SDDQQDITRGKG+VDSLF  P
Sbjct  56   QTDGDKWKGLAYDISDDQQDITRGKGIVDSLFQAP  90


>gi|7960277|gb|AAF71272.1|AF251264_1 UniGene infoGene info ribulose bisphosphate carboxylase activase B [Triticum aestivum]
Length=432

 Score = 63.2 bits (152),  Expect = 3e-10
 Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 0/43 (0%)
 Frame = +1

Query  271  KAPMKKXVKTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            K  + +  +TD D+W+GLAYD SDDQQDITRGKG+VDSLF  P
Sbjct  51   KKELDEGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAP  93


>gi|10720253|sp|Q42450|RCAB_HORVU Gene info Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplast 
precursor (RuBisCO activase B) (RA B)
 gi|167093|gb|AAA62703.1| UniGene infoGene info ribulose 1,5-bisphosphate carboxylase activase
 gi|167095|gb|AAA63162.1|  ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare 
subsp. vulgare]
Length=425

 Score = 63.2 bits (152),  Expect = 3e-10
 Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 0/43 (0%)
 Frame = +1

Query  271  KAPMKKXVKTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            K  + +  +TD D+W+GLAYD SDDQQDITRGKG+VDSLF  P
Sbjct  45   KKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAP  87


>gi|108864713|gb|ABG22614.1|  Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast 
precursor, putative, expressed [Oryza sativa (japonica 
cultivar-group)]
Length=428

 Score = 62.8 bits (151),  Expect = 4e-10
 Identities = 27/35 (77%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            +TD+D+W+GLAYD SDDQQDITRGKG VDSLF  P
Sbjct  56   QTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAP  90


>gi|62733297|gb|AAX95414.1|  RuBisCO activase small isoform precursor [Oryza sativa (japonica 
cultivar-group)]
Length=466

 Score = 62.8 bits (151),  Expect = 4e-10
 Identities = 27/35 (77%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            +TD+D+W+GLAYD SDDQQDITRGKG VDSLF  P
Sbjct  94   QTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAP  128


>gi|109940135|sp|P93431|RCA_ORYSA  Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast 
precursor (RuBisCO activase) (RA)
 gi|8918359|dbj|BAA97583.1| UniGene info RuBisCO activase large isoform precursor [Oryza sativa (japonica 
cultivar-group)]
 gi|32352158|dbj|BAC78572.1| UniGene info ribulose-bisphosphate carboxylase activase large isoform precursor 
protein [Oryza sativa (japonica cultivar-group)]
 gi|77552725|gb|ABA95522.1|  Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast 
precursor, putative, expressed [Oryza sativa (japonica 
cultivar-group)]
Length=466

 Score = 62.8 bits (151),  Expect = 4e-10
 Identities = 27/35 (77%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            +TD+D+W+GLAYD SDDQQDITRGKG VDSLF  P
Sbjct  56   QTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAP  90


>gi|1778414|gb|AAC28134.1| UniGene info ribulose-1,5-bisphosphate carboxylase/oxygenase activase [Oryza 
sativa]
Length=432

 Score = 62.8 bits (151),  Expect = 4e-10
 Identities = 27/35 (77%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            +TD+D+W+GLAYD SDDQQDITRGKG VDSLF  P
Sbjct  56   QTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAP  90


>gi|115486823|ref|NP_001068555.1| Gene info Os11g0707000 [Oryza sativa (japonica cultivar-group)]
 gi|8918361|dbj|BAA97584.1| UniGene info RuBisCO activase small isoform precursor [Oryza sativa]
 gi|62733169|gb|AAX95286.1| Gene info RuBisCO activase small isoform precursor [Oryza sativa (japonica 
cultivar-group)]
 gi|77552726|gb|ABA95523.1| Gene info Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast 
precursor, putative, expressed [Oryza sativa (japonica 
cultivar-group)]
 gi|113645777|dbj|BAF28918.1| Gene info Os11g0707000 [Oryza sativa (japonica cultivar-group)]
Length=433

 Score = 62.8 bits (151),  Expect = 4e-10
 Identities = 27/35 (77%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            +TD+D+W+GLAYD SDDQQDITRGKG VDSLF  P
Sbjct  56   QTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAP  90


>gi|115486825|ref|NP_001068556.1| Gene info Os11g0707100 [Oryza sativa (japonica cultivar-group)]
 gi|62733170|gb|AAX95287.1| Gene info Similar to ribulose bisphosphate carboxylase/oxygenase activase 
b, chloroplastprecursor (rubisco activase b) (ra b) [Oryza 
sativa (japonica cultivar-group)]
 gi|62733298|gb|AAX95415.1| Gene info ribulose bisphosphate carboxylase/oxygenase activase b, chloroplastprecursor 
(rubisco activase b) (ra b)-related [Oryza sativa 
(japonica cultivar-group)]
 gi|77552727|gb|ABA95524.1| Gene info expressed protein [Oryza sativa (japonica cultivar-group)]
 gi|113645778|dbj|BAF28919.1| Gene info Os11g0707100 [Oryza sativa (japonica cultivar-group)]
Length=366

 Score = 62.0 bits (149),  Expect = 7e-10
 Identities = 26/35 (74%), Positives = 32/35 (91%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            +T++D+W+GLAYD SDDQQDITRGKG+VDSLF  P
Sbjct  57   QTEQDRWKGLAYDISDDQQDITRGKGLVDSLFQAP  91


>gi|167096|gb|AAA63163.1|  ribulose 1,5-bisphosphate carboxylase activase isoform 1 [Hordeum 
vulgare subsp. vulgare]
Length=427

 Score = 60.8 bits (146),  Expect = 2e-09
 Identities = 27/35 (77%), Positives = 30/35 (85%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            K + DKW+GLAYD SDDQQDITRGKG+VDSLF  P
Sbjct  55   KRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAP  89


>gi|12643756|sp|Q40073|RCAA_HORVU  Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplast 
precursor (RuBisCO activase A) (RA A)
 gi|167097|gb|AAA63164.1|  ribulose 1,5-bisphosphate carboxylase activase isoform 2 [Hordeum 
vulgare subsp. vulgare]
Length=464

 Score = 60.8 bits (146),  Expect = 2e-09
 Identities = 27/35 (77%), Positives = 30/35 (85%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            K + DKW+GLAYD SDDQQDITRGKG+VDSLF  P
Sbjct  55   KRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAP  89


>gi|445628|prf||1909374A  RuBisCO activase
Length=383

 Score = 60.5 bits (145),  Expect = 2e-09
 Identities = 28/42 (66%), Positives = 31/42 (73%), Gaps = 0/42 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGPP*TMXTH  420
            +TD D+W+GL  D SDDQQDITRGKGMVDSLF  P  T   H
Sbjct  10   QTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHH  51


>gi|100615|pir||C23703  ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) A short 
form precursor - barley
 gi|167091|gb|AAA62702.1| UniGene info ribulose 1,5-bisphosphate carboxylase activase
Length=427

 Score = 57.4 bits (137),  Expect = 2e-08
 Identities = 26/35 (74%), Positives = 29/35 (82%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            K + DKW+GLA D SDDQQDITRGKG+VDSLF  P
Sbjct  55   KRNTDKWKGLATDISDDQQDITRGKGIVDSLFQAP  89


>gi|100614|pir||B23703  ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) A long 
form precursor - barley (fragment)
 gi|167089|gb|AAA62701.1| UniGene info ribulose 1,5-bisphosphate carboxylase activase
Length=426

 Score = 57.4 bits (137),  Expect = 2e-08
 Identities = 26/35 (74%), Positives = 29/35 (82%), Gaps = 0/35 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            K + DKW+GLA D SDDQQDITRGKG+VDSLF  P
Sbjct  17   KRNTDKWKGLATDISDDQQDITRGKGIVDSLFQAP  51


>gi|13430332|gb|AAK25798.1|AF338237_1  rubisco activase [Zantedeschia aethiopica]
Length=436

 Score = 55.8 bits (133),  Expect = 5e-08
 Identities = 26/42 (61%), Positives = 30/42 (71%), Gaps = 0/42 (0%)
 Frame = +1

Query  274  APMKKXVKTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            A + +  +T  D+W GL  D SDDQQDITRGKGMVDSLF  P
Sbjct  20   ADLDESKQTKTDRWAGLYTDTSDDQQDITRGKGMVDSLFQAP  61


>gi|13430338|gb|AAK25801.1|AF338240_1  rubisco activase [Zantedeschia aethiopica]
Length=435

 Score = 55.8 bits (133),  Expect = 5e-08
 Identities = 26/42 (61%), Positives = 30/42 (71%), Gaps = 0/42 (0%)
 Frame = +1

Query  274  APMKKXVKTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            A + +  +T  D+W GL  D SDDQQDITRGKGMVDSLF  P
Sbjct  56   ADLDESKQTKTDRWAGLYTDTSDDQQDITRGKGMVDSLFQAP  97


 Score = 35.8 bits (81),  Expect = 0.052
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 0/68 (0%)
 Frame = +3

Query  99   AVSTIGAVNRAPLSLNgsgagaavpssaFLGSSLKKVSSRFSNSKLPSVSFKVVASTEST  278
            AVS++GAVNR   SL+GSG+GA+V  S FLG+SLK V+    + +  + + KV+A+    
Sbjct  1    AVSSVGAVNRVRPSLHGSGSGASVTRSGFLGTSLKTVNPSLGHGRTSTGTLKVMAADLDE  60

Query  279  DEEXC*DR  302
             ++   DR
Sbjct  61   SKQTKTDR  68


>gi|13430336|gb|AAK25800.1|AF338239_1  rubisco activase [Zantedeschia aethiopica]
Length=426

 Score = 55.8 bits (133),  Expect = 5e-08
 Identities = 26/42 (61%), Positives = 30/42 (71%), Gaps = 0/42 (0%)
 Frame = +1

Query  274  APMKKXVKTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGP  399
            A + +  +T  D+W GL  D SDDQQDITRGKGMVDSLF  P
Sbjct  10   ADLDESKQTKTDRWAGLYTDTSDDQQDITRGKGMVDSLFQAP  51


>gi|116057240|emb|CAL51667.1|  RuBisCO activase (IC) [Ostreococcus tauri]
Length=407

 Score = 47.0 bits (110),  Expect = 2e-05
 Identities = 22/42 (52%), Positives = 26/42 (61%), Gaps = 0/42 (0%)
 Frame = +1

Query  295  KTDKDKWRGLAYDESDDQQDITRGKGMVDSLFPGPP*TMXTH  420
            K +  +W+G+  D SDDQQDI RGK MVDS F G      TH
Sbjct  30   KVEMSRWKGMDMDISDDQQDIARGKNMVDSKFQGGAGIGGTH  71


>gi|1805719|emb|CAA71667.1|  Rubisco activase [Chlorococcum littorale]
Length=403

 Score = 46.6 bits (109),  Expect = 3e-05
 Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +1

Query  271  KAPMKKXVKTDKDKWRGL--AYDESDDQQDITRGKGMVDSLFPGPP*TMXTH  420
            + P  K  K+   +W  +    D SDDQQDITRG+ MVDSLF GP     TH
Sbjct  23   RVPACKASKSQAGRWAAIDAGNDMSDDQQDITRGRDMVDSLFQGPGSGGGTH  74







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 226
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 420
Length of database: 101054579
Length adjustment: 101
Effective length of query: 319
Effective length of database: 72436330
Effective search space: 2825016870
Effective search space used: 2825016870
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)