RID=1168940982-15700-53843525034.BLASTQ4, Contig168

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168940982-15700-53843525034.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig168
Length=387

Distribution of 10 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|92877036|gb|ABE84270.1|  Integrase, catalytic region [Medicago  30.4    2.0  
gi|9972352|gb|AAG10602.1|AC008030_2  Similar to DNA-directed R...  29.6    3.3  
gi|12324162|gb|AAG52049.1|AC022455_3  DNA-directed RNA polymer...  29.6    3.3  
gi|79356046|ref|NP_564341.2|  NRPA2; DNA binding / DNA-directe...  29.6    3.3   
gi|91805911|gb|ABE65684.1|  polyadenylate-binding protein [Arabid  28.5    7.4   
gi|10086463|gb|AAG12523.1|AC015446_4  Similar to Polyadenylate...  28.5    7.4  
gi|22329932|ref|NP_174676.2|  PAB1; RNA binding / translation ...  28.5    7.4   
gi|34541998|gb|AAQ74890.1|  Rp1-like protein [Sorghum bicolor]     28.1    9.7  
gi|27542753|gb|AAO16686.1|  putative Rp1-like protein [Sorghum bi  28.1    9.7  
gi|22795247|gb|AAN08219.1|  hypothetical protein [Oryza sativa...  28.1    9.7

Alignments

 

>gi|92877036|gb|ABE84270.1|  Integrase, catalytic region [Medicago truncatula]
Length=1224

 Score = 30.4 bits (67),  Expect = 2.0
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 0/44 (0%)
 Frame = -1

Query  249  RNFIQFYFLKLYTIKNLHAFTYTVTNSLHVLSY*KNNSWHVLKL  118
            RN     +L+ Y   N+HAFTY +T+SL       + S+ V+ L
Sbjct  654  RNVTAPSYLQDYICNNIHAFTYPITHSLSHHHLSNSRSFFVMSL  697


>gi|9972352|gb|AAG10602.1|AC008030_2  Similar to DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length=1233

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
 Frame = -3

Query  178  DKFLACFIILKKQFLACFKTSL-----SCRN--ILIYTHVQTHIYLKESNPRYKKKCKXX  20
            DKF     I++K +    +TSL     S +N  IL+  HV T IYLKE    + +KCK  
Sbjct  370  DKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVIT-IYLKEKLEEWLRKCKSL  428

Query  19   L  17
            L
Sbjct  429  L  429


>gi|12324162|gb|AAG52049.1|AC022455_3  DNA-directed RNA polymerase subunit, putative; 8546-1198 [Arabidopsis 
thaliana]
Length=1114

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
 Frame = -3

Query  178  DKFLACFIILKKQFLACFKTSL-----SCRN--ILIYTHVQTHIYLKESNPRYKKKCKXX  20
            DKF     I++K +    +TSL     S +N  IL+  HV T IYLKE    + +KCK  
Sbjct  280  DKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVIT-IYLKEKLEEWLRKCKSL  338

Query  19   L  17
            L
Sbjct  339  L  339


>gi|79356046|ref|NP_564341.2|  NRPA2; DNA binding / DNA-directed RNA polymerase [Arabidopsis 
thaliana]
Length=1178

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
 Frame = -3

Query  178  DKFLACFIILKKQFLACFKTSL-----SCRN--ILIYTHVQTHIYLKESNPRYKKKCKXX  20
            DKF     I++K +    +TSL     S +N  IL+  HV T IYLKE    + +KCK  
Sbjct  338  DKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVIT-IYLKEKLEEWLRKCKSL  396

Query  19   L  17
            L
Sbjct  397  L  397


>gi|91805911|gb|ABE65684.1|  polyadenylate-binding protein [Arabidopsis thaliana]
Length=267

 Score = 28.5 bits (62),  Expect = 7.4
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query  243  FIQFYF-LKLYTIKNLHAFTYTVTNSLHVLSY*KNNSWHVLKLLSHVVI  100
            F+QFY  L +YT  N H  T      +HV  +     W   ++ ++V +
Sbjct  75   FVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYV  123


>gi|10086463|gb|AAG12523.1|AC015446_4  Similar to Polyadenylate-Binding Proteins 2 and 5 [Arabidopsis 
thaliana]
Length=338

 Score = 28.5 bits (62),  Expect = 7.4
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query  243  FIQFYF-LKLYTIKNLHAFTYTVTNSLHVLSY*KNNSWHVLKLLSHVVI  100
            F+QFY  L +YT  N H  T      +HV  +     W   ++ ++V +
Sbjct  146  FVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYV  194


>gi|22329932|ref|NP_174676.2|  PAB1; RNA binding / translation initiation factor [Arabidopsis 
thaliana]
Length=407

 Score = 28.5 bits (62),  Expect = 7.4
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query  243  FIQFYF-LKLYTIKNLHAFTYTVTNSLHVLSY*KNNSWHVLKLLSHVVI  100
            F+QFY  L +YT  N H  T      +HV  +     W   ++ ++V +
Sbjct  75   FVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYV  123


>gi|34541998|gb|AAQ74890.1|  Rp1-like protein [Sorghum bicolor]
Length=1296

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query  48   GFDSFKYMWVCTCV*INILRHEREVLKHARN  140
            GFD    MWVC    +++ RH RE+++ A N
Sbjct  245  GFDI--RMWVCISRKLDVRRHTREIIESATN  273


>gi|27542753|gb|AAO16686.1|  putative Rp1-like protein [Sorghum bicolor]
Length=1297

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query  48   GFDSFKYMWVCTCV*INILRHEREVLKHARN  140
            GFD    MWVC    +++ RH RE+++ A N
Sbjct  245  GFDI--RMWVCISRKLDVRRHTREIIESATN  273


>gi|22795247|gb|AAN08219.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
 gi|28875970|gb|AAO59979.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=233

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 0/37 (0%)
 Frame = -3

Query  214  HNQKLACFYLHSDKFLACFIILKKQFLACFKTSLSCR  104
            HN  L C Y   ++  AC +  KK+ +AC    ++ R
Sbjct  183  HNFHLCCIYEWMERSQACPVCSKKKLVACVNPHITFR  219

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 224
Number of extensions: 5
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 387
Length of database: 101054579
Length adjustment: 95
Effective length of query: 292
Effective length of database: 74136424
Effective search space: 2520638416
Effective search space used: 2520638416
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)