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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168929268-24331-75546887499.BLASTQ1


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,458,890 sequences; 1,532,996,420 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig17
Length=733

Distribution of 34 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|1173256|sp|P46299|RS4_GOSHI  40S ribosomal protein S4 >gi|4...   437    2e-122
gi|22138108|gb|AAM93434.1|  40S ribosomal S4 protein [Glycine max   425    8e-119 UniGene infoGene info
gi|82400118|gb|ABB72798.1|  40S ribosomal protein S4-like protein   420    3e-117
gi|1173257|sp|P46300|RS4_SOLTU  40S ribosomal protein S4 >gi|4...   420    3e-117
gi|73759787|dbj|BAE20168.1|  ribosomal protein S4 [Panax ginseng]   419    7e-117
gi|92892080|gb|ABE91098.1|  40S ribosomal S4 protein [Medicago tr   417    2e-116
gi|15237195|ref|NP_200650.1|  structural constituent of riboso...   417    2e-116 UniGene infoGene info
gi|18398393|ref|NP_565414.1|  structural constituent of riboso...   417    2e-116 UniGene infoGene info
gi|18415395|ref|NP_568179.1|  structural constituent of riboso...   417    2e-116 UniGene infoGene info
gi|9759565|dbj|BAB11167.1|  40S ribosomal protein S4 [Arabidopsis   417    2e-116
gi|17979233|gb|AAL49933.1|  AT5g58420/mqj2_10 [Arabidopsis tha...   416    5e-116 UniGene info
gi|3914899|sp|O22424|RS4_MAIZE  40S ribosomal protein S4 >gi|2...   415    8e-116
gi|115443689|ref|NP_001045624.1|  Os02g0105900 [Oryza sativa (...   411    1e-114 Gene info
gi|115436514|ref|NP_001043015.1|  Os01g0358400 [Oryza sativa (...   411    2e-114 Gene info
gi|44894458|gb|AAS48726.1|  ribosomal protein S4 [Zea mays]         410    3e-114 UniGene info
gi|48596901|dbj|BAD22763.1|  ribosomal protein [Bromus inermis]     407    2e-113
gi|2345154|gb|AAB67831.1|  ribsomal protein S4 [Zea mays]           406    4e-113 UniGene info
gi|115463485|ref|NP_001055342.1|  Os05g0368300 [Oryza sativa (...   404    2e-112 Gene info
gi|10177019|dbj|BAB10257.1|  ribosomal protein S4 [Arabidopsis th   398    1e-110
gi|6598334|gb|AAB86513.2|  putative ribosomal protein S4 [Arabido   398    1e-110
gi|79327186|ref|NP_001031846.1|  structural constituent of riboso   398    1e-110 UniGene infoGene info
gi|17367482|sp|O81363|RS4_PRUAR  40S ribosomal protein S4 >gi|...   392    9e-109
gi|47777385|gb|AAT38019.1|  putative 40S ribosomal protein S4 ...   384    2e-106 Gene info
gi|2463335|emb|CAA75242.1|  ribosomal protein S4 [Oryza sativa (j   320    3e-87  UniGene info
gi|60418888|gb|AAX19871.1|  putative ribosomal protein S4 [Doryan   230    5e-60 
gi|457682|dbj|BAA04961.1|  SS620 [Oryza sativa]                     155    1e-37  UniGene info
gi|116055779|emb|CAL57864.1|  40S ribosomal protein S4 (ISS) [Ost   120    7e-27 
gi|116055780|emb|CAL57865.1|  unnamed protein product [Ostreococc  74.3    4e-13 
gi|76800554|gb|ABA55684.1|  maturase K [Hypericum perforatum]      31.6    3.3   
gi|41059801|gb|AAR99375.1|  small heat shock protein [Prunus pers  30.8    5.6   
gi|115446011|ref|NP_001046785.1|  Os02g0459600 [Oryza sativa (...  30.4    7.3    Gene info
gi|47824970|gb|AAT38744.1|  Putative gag-pol polyprotein, identic  30.4    7.3   
gi|47497855|dbj|BAD19984.1|  putative serine/threonine-specifi...  30.4    7.3    Gene info
gi|54261821|gb|AAV31171.1|  Putative polyprotein, identical [Sola  30.0    9.5
Alignments

>gi|1173256|sp|P46299|RS4_GOSHI  40S ribosomal protein S4
 gi|488739|emb|CAA55882.1| UniGene info ribosomal protein, small subunit 4e (RS4e) [Gossypium hirsutum]
Length=262

 Score =  437 bits (1124),  Expect = 2e-122
 Identities = 235/239 (98%), Positives = 236/239 (98%), Gaps = 0/239 (0%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  180
            KRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH
Sbjct  10   KRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  69

Query  181  VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSV  360
            VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRF LHAITGDETKFKLCKVRSV
Sbjct  70   VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETKFKLCKVRSV  129

Query  361  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnr  540
            QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNR
Sbjct  130  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNR  189

Query  541  grvgvIKNREKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            GRVGVIKNREKHKGSFETIH+QDAAGHEFATRLGNVFTIGKGTKPWVSLPK KGIKLSI
Sbjct  190  GRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPKRKGIKLSI  248


>gi|22138108|gb|AAM93434.1| UniGene infoGene info 40S ribosomal S4 protein [Glycine max]
Length=264

 Score =  425 bits (1093),  Expect = 8e-119
 Identities = 224/239 (93%), Positives = 233/239 (97%), Gaps = 0/239 (0%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  180
            KRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH
Sbjct  10   KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  69

Query  181  VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSV  360
            V+VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH++  DE KFKLCKVRSV
Sbjct  70   VLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSV  129

Query  361  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnr  540
            QFGQKGIPYLNTYDGRTIRYPDPLI+ANDTIKLDLE NKIVDFIKFDVGNVVMVTGGRNR
Sbjct  130  QFGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNR  189

Query  541  grvgvIKNREKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            GRVGVIKNREKHKGSFETIH+QD+ GHEFATR+GNVFTIGKGTKPW+SLPKGKGIKLSI
Sbjct  190  GRVGVIKNREKHKGSFETIHVQDSTGHEFATRMGNVFTIGKGTKPWISLPKGKGIKLSI  248


>gi|82400118|gb|ABB72798.1|  40S ribosomal protein S4-like protein [Solanum tuberosum]
Length=264

 Score =  420 bits (1079),  Expect = 3e-117
 Identities = 221/239 (92%), Positives = 234/239 (97%), Gaps = 0/239 (0%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  180
            KRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYREVI+ILMQR 
Sbjct  10   KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVISILMQRQ  69

Query  181  VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSV  360
            VMVDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH++  +E+KFKLCKVRSV
Sbjct  70   VMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESKFKLCKVRSV  129

Query  361  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnr  540
            QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNR
Sbjct  130  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNR  189

Query  541  grvgvIKNREKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            GRVGVIKNREKHKGSFET+HIQD+ GHEFATRLGNVFT+GKGTKPWVSLPKGKGIKL+I
Sbjct  190  GRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLTI  248


>gi|1173257|sp|P46300|RS4_SOLTU  40S ribosomal protein S4
 gi|457803|emb|CAA54095.1| UniGene info ribosomal protein S4 [Solanum tuberosum]
Length=264

 Score =  420 bits (1079),  Expect = 3e-117
 Identities = 221/239 (92%), Positives = 234/239 (97%), Gaps = 0/239 (0%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  180
            KRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYREVI+ILMQR 
Sbjct  10   KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVISILMQRQ  69

Query  181  VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSV  360
            VMVDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH++  +E+KFKLCKVRSV
Sbjct  70   VMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESKFKLCKVRSV  129

Query  361  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnr  540
            QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNR
Sbjct  130  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNR  189

Query  541  grvgvIKNREKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            GRVGVIKNREKHKGSFET+HIQD+ GHEFATRLGNVFT+GKGTKPWVSLPKGKGIKL+I
Sbjct  190  GRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLTI  248


>gi|73759787|dbj|BAE20168.1|  ribosomal protein S4 [Panax ginseng]
Length=264

 Score =  419 bits (1076),  Expect = 7e-117
 Identities = 220/239 (92%), Positives = 231/239 (96%), Gaps = 0/239 (0%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  180
            KRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV +ILMQRH
Sbjct  10   KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVQSILMQRH  69

Query  181  VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSV  360
            V+VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH++  +E KFKLCKVRSV
Sbjct  70   VLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSV  129

Query  361  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnr  540
            QFGQKGIPY+NTYDGRTIRYPDPLIKANDTIKLDLE+NKI DFIKFDVGNVVMVTGGRN 
Sbjct  130  QFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEANKIADFIKFDVGNVVMVTGGRNT  189

Query  541  grvgvIKNREKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            GRVGVIKNREKHKGSFET+HIQD+ GHEFATRLGNVFTIGKGTKPWVSLPKGKGIKL+I
Sbjct  190  GRVGVIKNREKHKGSFETVHIQDSLGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTI  248


>gi|92892080|gb|ABE91098.1|  40S ribosomal S4 protein [Medicago truncatula]
Length=265

 Score =  417 bits (1073),  Expect = 2e-116
 Identities = 219/239 (91%), Positives = 230/239 (96%), Gaps = 0/239 (0%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  180
            KRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH
Sbjct  10   KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  69

Query  181  VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSV  360
            V+VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH++  DE KFKLCKVRSV
Sbjct  70   VLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSV  129

Query  361  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnr  540
            QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLE NKI DFIKFDVGNVVMVTGGRNR
Sbjct  130  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNR  189

Query  541  grvgvIKNREKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            GRVG IKNR+KH G+FETIH+QDAAGHEFATRLGNVFTIG+G KPWVSLPKG+GIKL++
Sbjct  190  GRVGFIKNRKKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTV  248


>gi|15237195|ref|NP_200650.1| UniGene infoGene info structural constituent of ribosome [Arabidopsis thaliana]
 gi|115311859|sp|Q8VYK6|RS43_ARATH Gene info 40S ribosomal protein S4-3
 gi|16226259|gb|AAL16117.1|AF428285_1 UniGene infoGene info AT5g58420/mqj2_10 [Arabidopsis thaliana]
 gi|21592333|gb|AAM64284.1| UniGene infoGene info ribosomal protein S4-like [Arabidopsis thaliana]
Length=262

 Score =  417 bits (1073),  Expect = 2e-116
 Identities = 219/239 (91%), Positives = 232/239 (97%), Gaps = 0/239 (0%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  180
            KRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH
Sbjct  10   KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRH  69

Query  181  VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSV  360
            + VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH+I  +E KFKLCKVRS+
Sbjct  70   IQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSI  129

Query  361  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnr  540
            QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE+NKIV+FIKFDVGNVVMVTGGRNR
Sbjct  130  QFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNR  189

Query  541  grvgvIKNREKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            GRVGVIKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+I
Sbjct  190  GRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTI  248


>gi|18398393|ref|NP_565414.1| UniGene infoGene info structural constituent of ribosome [Arabidopsis thaliana]
 gi|75163156|sp|Q93VH9|RS41_ARATH Gene info 40S ribosomal protein S4-1
 gi|13877537|gb|AAK43846.1|AF370469_1 UniGene infoGene info Unknown protein [Arabidopsis thaliana]
 gi|14334916|gb|AAK59636.1| UniGene infoGene info putative ribosomal protein S4 [Arabidopsis thaliana]
 gi|17104537|gb|AAL34157.1| UniGene infoGene info putative ribosomal protein S4 [Arabidopsis thaliana]
 gi|17978689|gb|AAL47338.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
 gi|21536498|gb|AAM60830.1| UniGene infoGene info putative ribosomal protein S4 [Arabidopsis thaliana]
Length=261

 Score =  417 bits (1072),  Expect = 2e-116
 Identities = 219/239 (91%), Positives = 231/239 (96%), Gaps = 0/239 (0%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  180
            KRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH
Sbjct  10   KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRH  69

Query  181  VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSV  360
            + VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH+I  +E KFKLCKVRS+
Sbjct  70   IQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSI  129

Query  361  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnr  540
            QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKIV+FIKFDVGNVVMVTGGRNR
Sbjct  130  QFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNR  189

Query  541  grvgvIKNREKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            GRVGVIKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+I
Sbjct  190  GRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTI  248


>gi|18415395|ref|NP_568179.1| UniGene infoGene info structural constituent of ribosome [Arabidopsis thaliana]
 gi|20143904|sp|P49204|RS42_ARATH Gene info 40S ribosomal protein S4-2
 gi|7546687|emb|CAB87265.1| Gene info ribosomal protein S4 [Arabidopsis thaliana]
 gi|15292999|gb|AAK93610.1| UniGene infoGene info putative 40S ribosomal protein S4 [Arabidopsis thaliana]
 gi|17979543|gb|AAL50106.1| UniGene infoGene info AT5g07090/T28J14_30 [Arabidopsis thaliana]
 gi|19310835|gb|AAL85148.1| UniGene infoGene info putative 40S ribosomal protein S4 [Arabidopsis thaliana]
 gi|20147251|gb|AAM10339.1| UniGene infoGene info AT5g07090/T28J14_30 [Arabidopsis thaliana]
 gi|21537414|gb|AAM61755.1| UniGene infoGene info 40S ribosomal protein S4 [Arabidopsis thaliana]
Length=262

 Score =  417 bits (1072),  Expect = 2e-116
 Identities = 219/239 (91%), Positives = 231/239 (96%), Gaps = 0/239 (0%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  180
            KRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH
Sbjct  10   KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRH  69

Query  181  VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSV  360
            + VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH+I  +E KFKLCKVRS+
Sbjct  70   IQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSI  129

Query  361  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnr  540
            QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKIV+FIKFDVGNVVMVTGGRNR
Sbjct  130  QFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNR  189

Query  541  grvgvIKNREKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            GRVGVIKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+I
Sbjct  190  GRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTI  248


>gi|9759565|dbj|BAB11167.1|  40S ribosomal protein S4 [Arabidopsis thaliana]
Length=263

 Score =  417 bits (1072),  Expect = 2e-116
 Identities = 219/239 (91%), Positives = 231/239 (96%), Gaps = 0/239 (0%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  180
            KRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH
Sbjct  11   KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRH  70

Query  181  VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSV  360
            + VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH+I  +E KFKLCKVRS+
Sbjct  71   IQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSI  130

Query  361  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnr  540
            QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKIV+FIKFDVGNVVMVTGGRNR
Sbjct  131  QFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNR  190

Query  541  grvgvIKNREKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            GRVGVIKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+I
Sbjct  191  GRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTI  249


>gi|17979233|gb|AAL49933.1| UniGene info AT5g58420/mqj2_10 [Arabidopsis thaliana]
 gi|23505827|gb|AAN28773.1| UniGene info At5g58420/mqj2_10 [Arabidopsis thaliana]
Length=262

 Score =  416 bits (1069),  Expect = 5e-116
 Identities = 218/239 (91%), Positives = 232/239 (97%), Gaps = 0/239 (0%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  180
            KRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRL+YALTYREVI+ILMQRH
Sbjct  10   KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLEYALTYREVISILMQRH  69

Query  181  VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSV  360
            + VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH+I  +E KFKLCKVRS+
Sbjct  70   IQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSI  129

Query  361  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnr  540
            QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE+NKIV+FIKFDVGNVVMVTGGRNR
Sbjct  130  QFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNR  189

Query  541  grvgvIKNREKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            GRVGVIKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+I
Sbjct  190  GRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTI  248


>gi|3914899|sp|O22424|RS4_MAIZE  40S ribosomal protein S4
 gi|2331301|gb|AAB66899.1| UniGene info ribosomal protein S4 type I [Zea mays]
Length=265

 Score =  415 bits (1067),  Expect = 8e-116
 Identities = 216/239 (90%), Positives = 231/239 (96%), Gaps = 0/239 (0%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  180
            KRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYREVI+ILMQRH
Sbjct  10   KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRH  69

Query  181  VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSV  360
            V+VDGKVRTDKTYPAGFMDV+SIPKTNE++RLLYDTKGRFRLH I  ++ KFKLCKVRSV
Sbjct  70   VLVDGKVRTDKTYPAGFMDVISIPKTNENYRLLYDTKGRFRLHPIRDEDAKFKLCKVRSV  129

Query  361  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnr  540
            QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIK+DLE+NKIVDFIKFDVGNVVMVTGGRN 
Sbjct  130  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNT  189

Query  541  grvgvIKNREKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            GRVGVIKNREKHKGSFETIH++D+ GH+FATR+GNVFTIGKG KPWVSLPKGKGIKLSI
Sbjct  190  GRVGVIKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVSLPKGKGIKLSI  248


>gi|115443689|ref|NP_001045624.1| Gene info Os02g0105900 [Oryza sativa (japonica cultivar-group)]
 gi|109940160|sp|P49398|RS4_ORYSA  40S ribosomal protein S4 (SCAR protein SS620)
 gi|50252099|dbj|BAD28085.1| Gene info putative ribosomal protein S4 [Oryza sativa (japonica cultivar-group)]
 gi|113535155|dbj|BAF07538.1| Gene info Os02g0105900 [Oryza sativa (japonica cultivar-group)]
Length=265

 Score =  411 bits (1057),  Expect = 1e-114
 Identities = 214/239 (89%), Positives = 230/239 (96%), Gaps = 0/239 (0%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  180
            KRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYREVI+ILMQRH
Sbjct  10   KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRH  69

Query  181  VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSV  360
            V+VDGKVRTDKTYPAGFMDV+SIPKT E++RLLYDTKGRFRL ++  ++ KFKLCKVRSV
Sbjct  70   VLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSV  129

Query  361  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnr  540
            QFGQKGIPYLNTYDGRTIRYPDP+IKANDTIK+DLE+NKIVDFIKFDVGNVVMVTGGRN 
Sbjct  130  QFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNT  189

Query  541  grvgvIKNREKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            GRVGVIKNREKHKGSFETIH++DA GH+FATRLGNVFTIGKG KPWVSLPKGKGIKLSI
Sbjct  190  GRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSI  248


>gi|115436514|ref|NP_001043015.1| Gene info Os01g0358400 [Oryza sativa (japonica cultivar-group)]
 gi|53791616|dbj|BAD52963.1| Gene info putative 40S ribosomal protein S4 [Oryza sativa (japonica cultivar-group)]
 gi|113532546|dbj|BAF04929.1| Gene info Os01g0358400 [Oryza sativa (japonica cultivar-group)]
Length=265

 Score =  411 bits (1056),  Expect = 2e-114
 Identities = 215/239 (89%), Positives = 229/239 (95%), Gaps = 0/239 (0%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  180
            KRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYREVI+ILMQRH
Sbjct  10   KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRH  69

Query  181  VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSV  360
            V+VDGKVRTDKTYPAGFMDV+SIPKT E++RLLYDTKGRFRL ++  ++ KFKLCKVRSV
Sbjct  70   VLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSV  129

Query  361  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnr  540
            QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIK+DLE+NKIVDFIKFDVGNVVMVTGGRN 
Sbjct  130  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNT  189

Query  541  grvgvIKNREKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            GRVGVIKNREKHKGSFETIH++DA GH FATRLGNVFTIGKG KPWVSLPKGKGIKLSI
Sbjct  190  GRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNVFTIGKGNKPWVSLPKGKGIKLSI  248


>gi|44894458|gb|AAS48726.1| UniGene info ribosomal protein S4 [Zea mays]
Length=265

 Score =  410 bits (1054),  Expect = 3e-114
 Identities = 214/239 (89%), Positives = 229/239 (95%), Gaps = 0/239 (0%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  180
            KRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYREVI+ILMQRH
Sbjct  10   KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRH  69

Query  181  VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSV  360
            V+VDGKVRTDKTYPAGFMDV+SIPKTNE++RLLYDTKGRFRLH I  ++ KFKLCKVRSV
Sbjct  70   VLVDGKVRTDKTYPAGFMDVISIPKTNENYRLLYDTKGRFRLHPIRDEDAKFKLCKVRSV  129

Query  361  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnr  540
            QFGQKGIPYLNTYDGRTIRYPDP IKANDTIK+DLE+NKIVDFIKFDVGNVVMVTGGRN 
Sbjct  130  QFGQKGIPYLNTYDGRTIRYPDPPIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNT  189

Query  541  grvgvIKNREKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            GRVGVIKNREKHKGS ETIH++D+ GH+FATR+GNVFTIGKG KPWVSLPKGKGIKLSI
Sbjct  190  GRVGVIKNREKHKGSLETIHVEDSLGHQFATRMGNVFTIGKGNKPWVSLPKGKGIKLSI  248


>gi|48596901|dbj|BAD22763.1|  ribosomal protein [Bromus inermis]
Length=265

 Score =  407 bits (1047),  Expect = 2e-113
 Identities = 211/239 (88%), Positives = 231/239 (96%), Gaps = 0/239 (0%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  180
            KRLNAP+HWMLDKLGGAFAPKPSSGPHK+RECLPLILILRNRLKYALTYREV +ILMQRH
Sbjct  10   KRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVQSILMQRH  69

Query  181  VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSV  360
            +MVDGKVRTDKTYPAGFMD++SIPKT E++RLLYDTKGRFRLH++  ++ K+KLCKVRSV
Sbjct  70   IMVDGKVRTDKTYPAGFMDIISIPKTGENYRLLYDTKGRFRLHSVRDEDAKYKLCKVRSV  129

Query  361  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnr  540
            QFGQKGIPYLNT DGRTIRYPDPLIKANDTIKLDLE+NKIVDFIKFDVGNVVMVTGGRN 
Sbjct  130  QFGQKGIPYLNTNDGRTIRYPDPLIKANDTIKLDLETNKIVDFIKFDVGNVVMVTGGRNT  189

Query  541  grvgvIKNREKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            GRVGVIKNREKHKG+FETIH++DA GH+FATRLGNVFTIGKGTKPWV+LPKGKGIKL+I
Sbjct  190  GRVGVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVTLPKGKGIKLTI  248


>gi|2345154|gb|AAB67831.1| UniGene info ribsomal protein S4 [Zea mays]
Length=265

 Score =  406 bits (1044),  Expect = 4e-113
 Identities = 211/239 (88%), Positives = 228/239 (95%), Gaps = 0/239 (0%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  180
            KRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYAL YREVI+ILMQRH
Sbjct  10   KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALNYREVISILMQRH  69

Query  181  VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSV  360
            V+VDGKVRTDKTYPAGFMDV+SIPKT E++RLLYDTKGRFRLH I  ++ KFKLCKVRSV
Sbjct  70   VLVDGKVRTDKTYPAGFMDVISIPKTMENYRLLYDTKGRFRLHPIRDEDAKFKLCKVRSV  129

Query  361  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnr  540
            QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIK+DLE+NKI+DFIKFDVGNVVMVTGGRN 
Sbjct  130  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIMDFIKFDVGNVVMVTGGRNT  189

Query  541  grvgvIKNREKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            GRVGVIKNREKHKG F+TIH++D+ GH+FATR+GNVFTIGKG KPWVSLPKGKGIKLSI
Sbjct  190  GRVGVIKNREKHKGGFDTIHVEDSMGHQFATRMGNVFTIGKGNKPWVSLPKGKGIKLSI  248


>gi|115463485|ref|NP_001055342.1| Gene info Os05g0368300 [Oryza sativa (japonica cultivar-group)]
 gi|113578893|dbj|BAF17256.1| Gene info Os05g0368300 [Oryza sativa (japonica cultivar-group)]
Length=263

 Score =  404 bits (1038),  Expect = 2e-112
 Identities = 213/239 (89%), Positives = 229/239 (95%), Gaps = 0/239 (0%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  180
            KRLNAP+HWMLDKLGGAFAPKPSSGPHK+RECLPLILILRNRLKYALTYREVI+ILMQRH
Sbjct  10   KRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILMQRH  69

Query  181  VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSV  360
            VMVDGKVRTDKTYPAGFMDVVSI KT E+FRLLYDTKGRFRLH+I  ++ KFKLCKVRSV
Sbjct  70   VMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSV  129

Query  361  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnr  540
            QFGQKGIP+LNT DGRTIRYPDPLIKANDTIK+DLE+NKIVDFIKFDVGN+VMVTGGRN 
Sbjct  130  QFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNT  189

Query  541  grvgvIKNREKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            GRVGVIK+REKHKGSFETIH++DA GH+FATR+GNVFTIGK  KPWVSLPKGKGIKLSI
Sbjct  190  GRVGVIKSREKHKGSFETIHVEDALGHQFATRMGNVFTIGKERKPWVSLPKGKGIKLSI  248


>gi|10177019|dbj|BAB10257.1|  ribosomal protein S4 [Arabidopsis thaliana]
Length=244

 Score =  398 bits (1023),  Expect = 1e-110
 Identities = 211/230 (91%), Positives = 224/230 (97%), Gaps = 0/230 (0%)
 Frame = +1

Query  28   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRT  207
            MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VDGKVRT
Sbjct  1    MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT  60

Query  208  DKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSVQFGQKGIPY  387
            DKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH+I  +E KFKLCKVRS+QFGQKGIPY
Sbjct  61   DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY  120

Query  388  LNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnrgrvgvIKNR  567
            LNTYDGRTIRYPDPLIK NDTIKLDLE+NKIV+FIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct  121  LNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR  180

Query  568  EKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            EKHKGSFETIHIQD+ GHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+I
Sbjct  181  EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTI  230


>gi|6598334|gb|AAB86513.2|  putative ribosomal protein S4 [Arabidopsis thaliana]
Length=243

 Score =  398 bits (1022),  Expect = 1e-110
 Identities = 211/230 (91%), Positives = 223/230 (96%), Gaps = 0/230 (0%)
 Frame = +1

Query  28   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRT  207
            MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VDGKVRT
Sbjct  1    MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT  60

Query  208  DKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSVQFGQKGIPY  387
            DKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH+I  +E KFKLCKVRS+QFGQKGIPY
Sbjct  61   DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY  120

Query  388  LNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnrgrvgvIKNR  567
            LNTYDGRTIRYPDPLIK NDTIKLDLE NKIV+FIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct  121  LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR  180

Query  568  EKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            EKHKGSFETIHIQD+ GHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+I
Sbjct  181  EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTI  230


>gi|79327186|ref|NP_001031846.1| UniGene infoGene info structural constituent of ribosome [Arabidopsis thaliana]
Length=244

 Score =  398 bits (1022),  Expect = 1e-110
 Identities = 211/230 (91%), Positives = 223/230 (96%), Gaps = 0/230 (0%)
 Frame = +1

Query  28   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRT  207
            MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VDGKVRT
Sbjct  1    MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT  60

Query  208  DKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSVQFGQKGIPY  387
            DKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH+I  +E KFKLCKVRS+QFGQKGIPY
Sbjct  61   DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY  120

Query  388  LNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnrgrvgvIKNR  567
            LNTYDGRTIRYPDPLIK NDTIKLDLE NKIV+FIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct  121  LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR  180

Query  568  EKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            EKHKGSFETIHIQD+ GHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+I
Sbjct  181  EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTI  230


>gi|17367482|sp|O81363|RS4_PRUAR  40S ribosomal protein S4
 gi|3264763|gb|AAC24585.1|  40S ribosomal protein S4 [Prunus armeniaca]
Length=261

 Score =  392 bits (1006),  Expect = 9e-109
 Identities = 210/239 (87%), Positives = 224/239 (93%), Gaps = 4/239 (1%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  180
            KRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV++ILMQRH
Sbjct  10   KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVVSILMQRH  69

Query  181  VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSV  360
            ++VDGK+     +     DVVSIPKTNE+FRLLYDTKGRFRLH+I  +E+KFKLCKVRSV
Sbjct  70   ILVDGKIH----FCIRLSDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESKFKLCKVRSV  125

Query  361  QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnr  540
            QFGQKGIPY+NTYDGRTIRYPDPLIKANDTIKLDLE+NKI DFIKFDVGNVVMVTGGRNR
Sbjct  126  QFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNR  185

Query  541  grvgvIKNREKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            GRVGVIKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKGTKPWVSLPKGKGIKL+I
Sbjct  186  GRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTI  244


>gi|47777385|gb|AAT38019.1| Gene info putative 40S ribosomal protein S4 [Oryza sativa (japonica cultivar-group)]
Length=245

 Score =  384 bits (987),  Expect = 2e-106
 Identities = 205/230 (89%), Positives = 220/230 (95%), Gaps = 0/230 (0%)
 Frame = +1

Query  28   MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRT  207
            MLDKLGGAFAPKPSSGPHK+RECLPLILILRNRLKYALTYREVI+ILMQRHVMVDGKVRT
Sbjct  1    MLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILMQRHVMVDGKVRT  60

Query  208  DKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSVQFGQKGIPY  387
            DKTYPAGFMDVVSI KT E+FRLLYDTKGRFRLH+I  ++ KFKLCKVRSVQFGQKGIP+
Sbjct  61   DKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPF  120

Query  388  LNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDvgnvvmvtggrnrgrvgvIKNR  567
            LNT DGRTIRYPDPLIKANDTIK+DLE+NKIVDFIKFDVGN+VMVTGGRN GRVGVIK+R
Sbjct  121  LNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTGRVGVIKSR  180

Query  568  EKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSI  717
            EKHKGSFETIH++DA GH+FATR+GNVFTIGK  KPWVSLPKGKGIKLSI
Sbjct  181  EKHKGSFETIHVEDALGHQFATRMGNVFTIGKERKPWVSLPKGKGIKLSI  230


>gi|2463335|emb|CAA75242.1| UniGene info ribosomal protein S4 [Oryza sativa (japonica cultivar-group)]
Length=268

 Score =  320 bits (821),  Expect = 3e-87
 Identities = 166/251 (66%), Positives = 188/251 (74%), Gaps = 21/251 (8%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  180
            KRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYREVI+ILMQRH
Sbjct  10   KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRH  69

Query  181  VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSV  360
            V+VDGKVRTDKTYPAGFMDV+SIPKT E++RLLYDTKGRFRL ++  ++ KFKLCKVRSV
Sbjct  70   VLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSV  129

Query  361  QFGQKGIPYLNTYDGRTIRYPDPLI------------KANDTIKLDLESNKIVDFIKFDv  504
            QFGQKGIPYLNTY   T  Y   +             ++ D  +L L    ++     D 
Sbjct  130  QFGQKGIPYLNTYVVPTDTYMATIATRPTSGKRHNQDRSGDQQELRLHQGLMLAMCHGDW  189

Query  505  gnvvmvtggrnrgrvgvIKNREKHKGSFETIHIQDAAGHEFATRLGNVFTIGKGTKPWVS  684
                 V            + + + KGSFETIH++DA GH+FATRLGNVFTIGKG KPWVS
Sbjct  190  RRNTAVWCD---------QQQGEAKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVS  240

Query  685  LPKGKGIKLSI  717
            LPKGKGIKLSI
Sbjct  241  LPKGKGIKLSI  251


>gi|60418888|gb|AAX19871.1|  putative ribosomal protein S4 [Doryanthes excelsa]
Length=131

 Score =  230 bits (586),  Expect = 5e-60
 Identities = 110/122 (90%), Positives = 117/122 (95%), Gaps = 0/122 (0%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRH  180
            KRLNAP HWML+KLGGAFAPKPSSGPHK+RECLPLILILRN+LKYALTYREVIAILMQRH
Sbjct  10   KRLNAPKHWMLNKLGGAFAPKPSSGPHKARECLPLILILRNKLKYALTYREVIAILMQRH  69

Query  181  VMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSV  360
            VMVD KVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH+I  +E KFKLCKVR+V
Sbjct  70   VMVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRNV  129

Query  361  QF  366
            QF
Sbjct  130  QF  131


>gi|457682|dbj|BAA04961.1| UniGene info SS620 [Oryza sativa]
Length=90

 Score =  155 bits (392),  Expect = 1e-37
 Identities = 73/88 (82%), Positives = 82/88 (93%), Gaps = 0/88 (0%)
 Frame = +1

Query  130  KYALTYREVIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLH  309
            KYALTYREVI+ILMQRHV+VDGKVRTDKTYPAGFMDV+SIPKT E++RLLYDTKGRFRL 
Sbjct  1    KYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQ  60

Query  310  AITGDETKFKLCKVRSVQFGQKGIPYLN  393
            ++  ++ KFKLCKVRSVQFGQKGI YLN
Sbjct  61   SVKDEDAKFKLCKVRSVQFGQKGIRYLN  88


>gi|116055779|emb|CAL57864.1|  40S ribosomal protein S4 (ISS) [Ostreococcus tauri]
Length=133

 Score =  120 bits (300),  Expect = 7e-27
 Identities = 60/86 (69%), Positives = 63/86 (73%), Gaps = 12/86 (13%)
 Frame = +1

Query  1    KRLNAPNHWMLDKLGGAFAPKPS------------SGPHKSRECLPLILILRNRLKYALT  144
            KRLNAP HWMLDKLGG FAPKPS             GPHK RECLPL LILRNRLKYALT
Sbjct  45   KRLNAPKHWMLDKLGGVFAPKPSPGACARPSKGPCEGPHKQRECLPLCLILRNRLKYALT  104

Query  145  YREVIAILMQRHVMVDGKVRTDKTYP  222
            Y+EV  ILMQR V VDGK+R DK +P
Sbjct  105  YKEVTTILMQRCVKVDGKIRMDKCFP  130


>gi|116055780|emb|CAL57865.1|  unnamed protein product [Ostreococcus tauri]
Length=197

 Score = 74.3 bits (181),  Expect = 4e-13
 Identities = 48/155 (30%), Positives = 85/155 (54%), Gaps = 0/155 (0%)
 Frame = -2

Query  717  NGQLDTLALRK*HPWLCSFSNCKDIP*TSCKLMPSSILNVDCLKATLMLLPVLNHSNTSP  538
            +G+LDTLAL K    L + ++ + +     KL+   +L V   + T +LL  L+H + + 
Sbjct  33   DGELDTLALGKRDHRLVARTDGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATG  92

Query  537  VPSSSDHDNIPNIKLNEINNFVALQVKLDGVISLDQRIRVADGASVIGIEVWNTLLAKLD  358
            V ++ DH    +++L+ I + V   V  +GV  LD  IRV +GA+V+  +  + L+ +L 
Sbjct  93   VVTTGDHAQSADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELL  152

Query  357  RSNLAELELGLITCDCMKAKTTFCVIKETEVLICL  253
              +LA+L L   + D +  +++  V+ E EV I L
Sbjct  153  APHLAQLVLRFDSLDAVHNESSLGVVDEPEVFIAL  187


>gi|76800554|gb|ABA55684.1|  maturase K [Hypericum perforatum]
Length=425

 Score = 31.6 bits (70),  Expect = 3.3
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
 Frame = +1

Query  121  NRLKYALTYREVIAILMQRHVMV-DGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGR  297
            N+L + +  R +  +  QRH+++ D   + +  Y   +M    I   +E F L+ +    
Sbjct  39   NKLSFLIVKRLITRMYQQRHLILSDNNYKQNHLYIYNYMIYYQI--ISEGFALIGEVAFS  96

Query  298  FRLHAITGDETKFKLCKVRSV----QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIK  456
             R      +    K+  +RS+     F +   PYLN   G  + YP  L K   T++
Sbjct  97   PRFVFSLENSEILKVQNLRSILSIFPFLEDQFPYLNYLSGGLLPYPIHLEKVVQTLR  153


>gi|41059801|gb|AAR99375.1|  small heat shock protein [Prunus persica]
Length=154

 Score = 30.8 bits (68),  Expect = 5.6
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query  119  RRMRISGRHSLDLWGPEDGLG--ANAPPS  39
            RR  +    SLD+W P +GLG  AN PPS
Sbjct  9    RRSNVFDPFSLDIWDPLEGLGTLANIPPS  37


>gi|115446011|ref|NP_001046785.1| Gene info Os02g0459600 [Oryza sativa (japonica cultivar-group)]
 gi|113536316|dbj|BAF08699.1| Gene info Os02g0459600 [Oryza sativa (japonica cultivar-group)]
Length=695

 Score = 30.4 bits (67),  Expect = 7.3
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 0/37 (0%)
 Frame = +2

Query  314  SQVMRPSSSSARLDLSNLARRVFHTSIPMTDAPSATL  424
            S VM  +  +ARL    LAR V H  +P+T  P+ TL
Sbjct  518  SNVMLDAEFNARLGDFGLARTVSHGGLPLTTQPAGTL  554


>gi|47824970|gb|AAT38744.1|  Putative gag-pol polyprotein, identical [Solanum demissum]
Length=1515

 Score = 30.4 bits (67),  Expect = 7.3
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = -3

Query  671  FVPFPIVKTFPRRVANSCPAAS*MWIVSKLPLCFSLFLITPTRPLFLPPVTM  516
            F   PIV+ FP    N  P      I  +  + F + LI  TRP+ +PP  M
Sbjct  624  FQSVPIVREFPEVFPNDLPG-----IPPEREIDFGIDLIPDTRPISIPPYRM  670


>gi|47497855|dbj|BAD19984.1| Gene info putative serine/threonine-specific protein kinase [Oryza sativa 
(japonica cultivar-group)]
Length=776

 Score = 30.4 bits (67),  Expect = 7.3
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 0/37 (0%)
 Frame = +2

Query  314  SQVMRPSSSSARLDLSNLARRVFHTSIPMTDAPSATL  424
            S VM  +  +ARL    LAR V H  +P+T  P+ TL
Sbjct  599  SNVMLDAEFNARLGDFGLARTVSHGGLPLTTQPAGTL  635


>gi|54261821|gb|AAV31171.1|  Putative polyprotein, identical [Solanum tuberosum]
Length=1487

 Score = 30.0 bits (66),  Expect = 9.5
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = -3

Query  671  FVPFPIVKTFPRRVANSCPAAS*MWIVSKLPLCFSLFLITPTRPLFLPPVTM  516
            F   PIV+ FP    +  P      I S+  + F + LI  TRP+ +PP  M
Sbjct  571  FQSVPIVREFPEVFPDDLPG-----IPSEREIEFGIGLIPDTRPISIPPYRM  617







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 482
Number of extensions: 17
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 733
Length of database: 101054579
Length adjustment: 110
Effective length of query: 623
Effective length of database: 69886189
Effective search space: 9364749326
Effective search space used: 9364749326
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 66 (30.0 bits)