RID=1168942950-3239-72116720885.BLASTQ4, Contig186

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168942950-3239-72116720885.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig186
Length=352

Distribution of 24 Blast Hits on the Query Sequence

Related Structures

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|30013659|gb|AAP03872.1|  putative photosystem I subunit III...  81.3    1e-15 
gi|8954295|gb|AAD27880.2|AF139468_1  photosystem I reaction cente  80.9    1e-15
gi|5734518|emb|CAB52747.1|  photosystem I subunit III precurso...  80.1    2e-15 
gi|15450361|gb|AAK96474.1|  At1g31330/T19E23_1 [Arabidopsis thali  80.1    2e-15 
gi|15221681|ref|NP_174418.1|  unknown protein [Arabidopsis tha...  80.1    2e-15 
gi|1172664|sp|P46486|PSAF_FLATR  Photosystem I reaction center...  78.6    6e-15
gi|115455687|ref|NP_001051444.1|  Os03g0778100 [Oryza sativa (...  72.4    5e-13 
gi|20303589|gb|AAM19016.1|AC084748_6  photosystem-1 F subunit ...  72.4    5e-13 
gi|3885892|gb|AAC78106.1|  photosystem-1 F subunit precursor [Ory  72.4    5e-13 
gi|131187|sp|P12355|PSAF_SPIOL  Photosystem I reaction center ...  72.0    6e-13
gi|548604|sp|P13192|PSAF_HORVU  Photosystem I reaction center ...  71.2    1e-12 
gi|74272697|gb|ABA01144.1|  chloroplast photosystem I subunit F [  55.5    6e-08
gi|131183|sp|P12356|PSAF_CHLRE  Photosystem I reaction center ...  54.7    1e-07
gi|116057159|emb|CAL51586.1|  Photosystem I subunit III, chlor...  54.3    1e-07
gi|1172663|sp|P42048|PSAF_CUCSA  Photosystem I reaction center...  49.3    4e-06
gi|2119844|pir||F56819  PS I complex subunit 7 - cucumber (fra...  45.4    6e-05
gi|478522|pir||PQ0683  photosystem I 16.1K F1 chain - common t...  43.1    3e-04
gi|131186|sp|P20119|PSAF_PEA  Photosystem I reaction center su...  42.4    5e-04
gi|6635336|gb|AAF19787.1|AF162201_1  photosystem I subunit III [L  41.2    0.001 
gi|40889488|pdb|1QZV|F  Chain F, Crystal Structure Of Plant Ph...  37.0    0.021 
gi|544743|gb|AAB29521.1|  PSI-F2=15.9 kda photosystem I psaF p...  33.1    0.30 
gi|478523|pir||PQ0684  photosystem I 15.9K F2 chain - common t...  32.0    0.68 
gi|131185|sp|P13193|PSAF_MAIZE  Photosystem I reaction center ...  30.0    2.6  
gi|261984|gb|AAB24550.1|  photosystem I light-harvesting compl...  29.3    4.4

Alignments

 

>gi|30013659|gb|AAP03872.1|  putative photosystem I subunit III precursor [Nicotiana tabacum]
Length=222

 Score = 81.3 bits (199),  Expect = 1e-15
 Identities = 40/41 (97%), Positives = 40/41 (97%), Gaps = 0/41 (0%)
 Frame = +3

Query  228  ADISGLTPCKESKQFAKREKQQIKKLESSLNLYAPDSAPAL  350
            ADISGLTPCKESKQFAKREKQQIKKLESSL LYAPDSAPAL
Sbjct  68   ADISGLTPCKESKQFAKREKQQIKKLESSLKLYAPDSAPAL  108


>gi|8954295|gb|AAD27880.2|AF139468_1  photosystem I reaction center subunit III [Vigna radiata]
Length=223

 Score = 80.9 bits (198),  Expect = 1e-15
 Identities = 40/42 (95%), Positives = 40/42 (95%), Gaps = 0/42 (0%)
 Frame = +3

Query  225  VADISGLTPCKESKQFAKREKQQIKKLESSLNLYAPDSAPAL  350
            VADISGLTPCKESKQFAKREKQ IKKLESSL LYAPDSAPAL
Sbjct  68   VADISGLTPCKESKQFAKREKQSIKKLESSLKLYAPDSAPAL  109


>gi|5734518|emb|CAB52747.1|  photosystem I subunit III precursor [Arabidopsis thaliana]
 gi|21593588|gb|AAM65555.1|  photosystem I subunit III precursor, putative [Arabidopsis thaliana]
Length=221

 Score = 80.1 bits (196),  Expect = 2e-15
 Identities = 39/42 (92%), Positives = 41/42 (97%), Gaps = 0/42 (0%)
 Frame = +3

Query  225  VADISGLTPCKESKQFAKREKQQIKKLESSLNLYAPDSAPAL  350
            VADISGLTPCK+SKQFAKREKQQIKKLESSL LYAP+SAPAL
Sbjct  66   VADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPAL  107


>gi|15450361|gb|AAK96474.1|  At1g31330/T19E23_1 [Arabidopsis thaliana]
Length=221

 Score = 80.1 bits (196),  Expect = 2e-15
 Identities = 39/42 (92%), Positives = 41/42 (97%), Gaps = 0/42 (0%)
 Frame = +3

Query  225  VADISGLTPCKESKQFAKREKQQIKKLESSLNLYAPDSAPAL  350
            VADISGLTPCK+SKQFAKREKQQIKKLESSL LYAP+SAPAL
Sbjct  66   VADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPAL  107


>gi|15221681|ref|NP_174418.1|  unknown protein [Arabidopsis thaliana]
 gi|6692130|gb|AAF24595.1|AC007654_11  T19E23.12 [Arabidopsis thaliana]
 gi|13430678|gb|AAK25961.1|AF360251_1  putative photosystem I subunit III precursor [Arabidopsis thaliana]
 gi|15983380|gb|AAL11558.1|AF424564_1  At1g31330/T19E23_1 [Arabidopsis thaliana]
 gi|15081656|gb|AAK82483.1|  At1g31330/T19E23_1 [Arabidopsis thaliana]
 gi|15293175|gb|AAK93698.1|  putative photosystem I subunit III precursor [Arabidopsis thaliana]
 gi|17065272|gb|AAL32790.1|  similar to photosystem I reaction centre subunit III precursor 
[Arabidopsis thaliana]
 gi|20334830|gb|AAM16171.1|  At1g31330/T19E23_1 [Arabidopsis thaliana]
 gi|23397082|gb|AAN31826.1|  putative photosystem I reaction centre subunit III precursor 
[Arabidopsis thaliana]
 gi|25083729|gb|AAN72110.1|  similar to photosystem I reaction centre subunit III precursor 
[Arabidopsis thaliana]
Length=221

 Score = 80.1 bits (196),  Expect = 2e-15
 Identities = 39/42 (92%), Positives = 41/42 (97%), Gaps = 0/42 (0%)
 Frame = +3

Query  225  VADISGLTPCKESKQFAKREKQQIKKLESSLNLYAPDSAPAL  350
            VADISGLTPCK+SKQFAKREKQQIKKLESSL LYAP+SAPAL
Sbjct  66   VADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPAL  107


>gi|1172664|sp|P46486|PSAF_FLATR  Photosystem I reaction center subunit III, chloroplast precursor 
(Light-harvesting complex I 17 kDa protein) (PSI-F)
 gi|168173|gb|AAA33344.1|  photosystem I subunit III
 gi|298482|gb|AAB25669.1|  photosystem I reaction center subunit III, PSI-RC PsaF [Flaveria 
trinervia, Peptide, 232 aa]
Length=232

 Score = 78.6 bits (192),  Expect = 6e-15
 Identities = 38/41 (92%), Positives = 39/41 (95%), Gaps = 0/41 (0%)
 Frame = +3

Query  228  ADISGLTPCKESKQFAKREKQQIKKLESSLNLYAPDSAPAL  350
            ADISGLTPCKESKQFAKREKQ +KKLESSL LYAPDSAPAL
Sbjct  78   ADISGLTPCKESKQFAKREKQSLKKLESSLKLYAPDSAPAL  118


>gi|115455687|ref|NP_001051444.1|  Os03g0778100 [Oryza sativa (japonica cultivar-group)]
 gi|113549915|dbj|BAF13358.1|  Os03g0778100 [Oryza sativa (japonica cultivar-group)]
Length=258

 Score = 72.4 bits (176),  Expect = 5e-13
 Identities = 35/41 (85%), Positives = 37/41 (90%), Gaps = 0/41 (0%)
 Frame = +3

Query  228  ADISGLTPCKESKQFAKREKQQIKKLESSLNLYAPDSAPAL  350
            ADI+GLTPCKESK FAKREKQ IKKL+SSL  YAPDSAPAL
Sbjct  100  ADIAGLTPCKESKAFAKREKQSIKKLQSSLKKYAPDSAPAL  140


>gi|20303589|gb|AAM19016.1|AC084748_6  photosystem-1 F subunit precursor [Oryza sativa (japonica cultivar-group)]
 gi|108711359|gb|ABF99154.1|  Photosystem I reaction center subunit III, chloroplast precursor, 
putative, expressed [Oryza sativa (japonica cultivar-group)]
 gi|108711360|gb|ABF99155.1|  Photosystem I reaction center subunit III, chloroplast precursor, 
putative, expressed [Oryza sativa (japonica cultivar-group)]
Length=236

 Score = 72.4 bits (176),  Expect = 5e-13
 Identities = 35/41 (85%), Positives = 37/41 (90%), Gaps = 0/41 (0%)
 Frame = +3

Query  228  ADISGLTPCKESKQFAKREKQQIKKLESSLNLYAPDSAPAL  350
            ADI+GLTPCKESK FAKREKQ IKKL+SSL  YAPDSAPAL
Sbjct  78   ADIAGLTPCKESKAFAKREKQSIKKLQSSLKKYAPDSAPAL  118


>gi|3885892|gb|AAC78106.1|  photosystem-1 F subunit precursor [Oryza sativa]
Length=236

 Score = 72.4 bits (176),  Expect = 5e-13
 Identities = 35/41 (85%), Positives = 37/41 (90%), Gaps = 0/41 (0%)
 Frame = +3

Query  228  ADISGLTPCKESKQFAKREKQQIKKLESSLNLYAPDSAPAL  350
            ADI+GLTPCKESK FAKREKQ IKKL+SSL  YAPDSAPAL
Sbjct  78   ADIAGLTPCKESKAFAKREKQSIKKLQSSLKKYAPDSAPAL  118


>gi|131187|sp|P12355|PSAF_SPIOL  Photosystem I reaction center subunit III, chloroplast precursor 
(Light-harvesting complex I 17 kDa protein) (PSI-F)
 gi|21303|emb|CAA31523.1|  PSI subunit IV preprotein (AA -77 to 154) [Spinacia oleracea]
 gi|226166|prf||1413236A  photosystem I reaction center IV
Length=231

 Score = 72.0 bits (175),  Expect = 6e-13
 Identities = 34/42 (80%), Positives = 39/42 (92%), Gaps = 0/42 (0%)
 Frame = +3

Query  225  VADISGLTPCKESKQFAKREKQQIKKLESSLNLYAPDSAPAL  350
            +ADI+GLTPCKESKQFAKREKQ +KKL++SL LYA DSAPAL
Sbjct  76   MADIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPAL  117


>gi|548604|sp|P13192|PSAF_HORVU  Photosystem I reaction center subunit III, chloroplast precursor 
(Light-harvesting complex I 17 kDa protein) (PSI-F)
 gi|469560|gb|AAA68147.1|  photosystem-I PSI-F subunit precursor
Length=235

 Score = 71.2 bits (173),  Expect = 1e-12
 Identities = 34/41 (82%), Positives = 36/41 (87%), Gaps = 0/41 (0%)
 Frame = +3

Query  228  ADISGLTPCKESKQFAKREKQQIKKLESSLNLYAPDSAPAL  350
            ADI+GLTPCKESK FAKREKQ +KKL SSL  YAPDSAPAL
Sbjct  77   ADIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPAL  117


>gi|74272697|gb|ABA01144.1|  chloroplast photosystem I subunit F [Chlamydomonas incerta]
Length=215

 Score = 55.5 bits (132),  Expect = 6e-08
 Identities = 26/42 (61%), Positives = 32/42 (76%), Gaps = 0/42 (0%)
 Frame = +3

Query  225  VADISGLTPCKESKQFAKREKQQIKKLESSLNLYAPDSAPAL  350
            +ADI+GLTPC ESK +AK EK++IK LE  L  Y  DSAPA+
Sbjct  49   MADIAGLTPCSESKAYAKLEKKEIKTLEKRLKQYEADSAPAV  90


>gi|131183|sp|P12356|PSAF_CHLRE  Photosystem I reaction center subunit III, chloroplast precursor 
(Light-harvesting complex I 17 kDa protein) (PSI-F) (P21 
protein)
 gi|4689368|gb|AAD27871.1|AF135791_1  photosystem I subunit F precursor [Chlamydomonas reinhardtii]
 gi|18184|emb|CAA31849.1|  P21 precursor protein [Chlamydomonas reinhardtii]
 gi|226938|prf||1611462A  photosystem I protein P21
Length=227

 Score = 54.7 bits (130),  Expect = 1e-07
 Identities = 25/42 (59%), Positives = 32/42 (76%), Gaps = 0/42 (0%)
 Frame = +3

Query  225  VADISGLTPCKESKQFAKREKQQIKKLESSLNLYAPDSAPAL  350
            +ADI+GLTPC ESK +AK EK+++K LE  L  Y  DSAPA+
Sbjct  61   MADIAGLTPCSESKAYAKLEKKELKTLEKRLKQYEADSAPAV  102


>gi|116057159|emb|CAL51586.1|  Photosystem I subunit III, chloroplast precursor (IC) [Ostreococcus 
tauri]
Length=231

 Score = 54.3 bits (129),  Expect = 1e-07
 Identities = 26/42 (61%), Positives = 30/42 (71%), Gaps = 0/42 (0%)
 Frame = +3

Query  225  VADISGLTPCKESKQFAKREKQQIKKLESSLNLYAPDSAPAL  350
            V   +GLTPCK SK FAKREK ++K LE  L  Y P+SAPAL
Sbjct  69   VQPYAGLTPCKTSKAFAKREKTELKALEKRLKKYDPESAPAL  110


>gi|1172663|sp|P42048|PSAF_CUCSA  Photosystem I reaction center subunit III (Photosystem I 18.5 
kDa protein) (PSI-F) (PS I subunit 7)
Length=26

 Score = 49.3 bits (116),  Expect = 4e-06
 Identities = 23/26 (88%), Positives = 23/26 (88%), Gaps = 0/26 (0%)
 Frame = +3

Query  231  DISGLTPCKESKQFAKREKQQIKKLE  308
            DISGLTPCKESKQF KREKQQ K LE
Sbjct  1    DISGLTPCKESKQFXKREKQQXKXLE  26


>gi|2119844|pir||F56819  PS I complex subunit 7 - cucumber (fragment)
 gi|234774|gb|AAB19691.1|  PS I complex subunit 7 [cucumbers, Peptide Chloroplast Partial, 
26 aa]
Length=26

 Score = 45.4 bits (106),  Expect = 6e-05
 Identities = 22/26 (84%), Positives = 22/26 (84%), Gaps = 0/26 (0%)
 Frame = +3

Query  231  DISGLTPCKESKQFAKREKQQIKKLE  308
            DISGLTP KESKQF KREKQQ K LE
Sbjct  1    DISGLTPXKESKQFXKREKQQXKXLE  26


>gi|478522|pir||PQ0683  photosystem I 16.1K F1 chain - common tobacco (fragment)
 gi|544744|gb|AAB29522.1|  PSI-F1=16.1 kda photosystem I psaF product {N-terminal} [Nicotiana 
sylvestris, leaves, Peptide Chloroplast Partial, 25 aa]
Length=25

 Score = 43.1 bits (100),  Expect = 3e-04
 Identities = 21/25 (84%), Positives = 21/25 (84%), Gaps = 0/25 (0%)
 Frame = +3

Query  231  DISGLTPCKESKQFAKREKQQIKKL  305
            DISGLTP KESKQFAK EKQ  KKL
Sbjct  1    DISGLTPXKESKQFAKXEKQXXKKL  25


>gi|131186|sp|P20119|PSAF_PEA  Photosystem I reaction center subunit III (Light-harvesting complex 
I 17 kDa protein) (PSI-F)
Length=20

 Score = 42.4 bits (98),  Expect = 5e-04
 Identities = 19/19 (100%), Positives = 19/19 (100%), Gaps = 0/19 (0%)
 Frame = +3

Query  234  ISGLTPCKESKQFAKREKQ  290
            ISGLTPCKESKQFAKREKQ
Sbjct  2    ISGLTPCKESKQFAKREKQ  20


>gi|6635336|gb|AAF19787.1|AF162201_1  photosystem I subunit III [Lactuca sativa]
Length=140

 Score = 41.2 bits (95),  Expect = 0.001
 Identities = 19/23 (82%), Positives = 21/23 (91%), Gaps = 0/23 (0%)
 Frame = +3

Query  282  EKQQIKKLESSLNLYAPDSAPAL  350
            EKQ +KKLESSL LYAP+SAPAL
Sbjct  4    EKQSLKKLESSLKLYAPESAPAL  26


>gi|40889488|pdb|1QZV|F  Chain F, Crystal Structure Of Plant Photosystem I
 gi|40889504|pdb|1QZV|U  Chain U, Crystal Structure Of Plant Photosystem I
Length=154

 Score = 37.0 bits (84),  Expect = 0.021
 Identities = 17/23 (73%), Positives = 20/23 (86%), Gaps = 0/23 (0%)
 Frame = +3

Query  282  EKQQIKKLESSLNLYAPDSAPAL  350
            EKQ +KKL++SL LYA DSAPAL
Sbjct  18   EKQALKKLQASLKLYADDSAPAL  40


>gi|544743|gb|AAB29521.1|  PSI-F2=15.9 kda photosystem I psaF product {N-terminal} [Nicotiana 
tabacum, leaves, Peptide Chloroplast Partial, 16 aa]
 gi|544745|gb|AAB29523.1|  PSI-F1=16.1 kda photosystem I psaF product {N-terminal} [Nicotiana 
tabacum, leaves, Peptide Chloroplast Partial, 16 aa]
Length=16

 Score = 33.1 bits (74),  Expect = 0.30
 Identities = 15/16 (93%), Positives = 15/16 (93%), Gaps = 0/16 (0%)
 Frame = +3

Query  231  DISGLTPCKESKQFAK  278
            DISGLTP KESKQFAK
Sbjct  1    DISGLTPXKESKQFAK  16


>gi|478523|pir||PQ0684  photosystem I 15.9K F2 chain - common tobacco (fragment)
 gi|544742|gb|AAB29520.1|  PSI-F2=15.9 kda photosystem I psaF product {N-terminal} [Nicotiana 
sylvestris, leaves, Peptide Chloroplast Partial, 20 aa]
Length=20

 Score = 32.0 bits (71),  Expect = 0.68
 Identities = 15/20 (75%), Positives = 15/20 (75%), Gaps = 0/20 (0%)
 Frame = +3

Query  231  DISGLTPCKESKQFAKREKQ  290
            DISGLTP KESKQF   E Q
Sbjct  1    DISGLTPXKESKQFXXXEXQ  20


>gi|131185|sp|P13193|PSAF_MAIZE  Photosystem I reaction center subunit III (Light-harvesting complex 
I 17 kDa protein) (PSI-F)
Length=20

 Score = 30.0 bits (66),  Expect = 2.6
 Identities = 14/18 (77%), Positives = 15/18 (83%), Gaps = 0/18 (0%)
 Frame = +3

Query  234  ISGLTPCKESKQFAKREK  287
            I+GLTP KESK FAK EK
Sbjct  2    IAGLTPPKESKAFAKXEK  19


>gi|261984|gb|AAB24550.1|  photosystem I light-harvesting complex chlorophyll a/b protein, 
p21 {N-terminal} [Chlamydomonas reinhardtii, Peptide Partial, 
31 aa]
Length=31

 Score = 29.3 bits (64),  Expect = 4.4
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query  231  DISGLTPC-KESKQFAKREKQQIKKLESSL  317
            DI+GLTPC  E K +AK  K+ +K L   L
Sbjct  1    DIAGLTPCIXEKKAYAKLXKKXLKTLXKRL  30

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 214
Number of extensions: 4
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 352
Length of database: 101054579
Length adjustment: 84
Effective length of query: 268
Effective length of database: 77253263
Effective search space: 2549357679
Effective search space used: 2549357679
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)