Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168943016-9887-195270145370.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig190 Length=872
Score E Sequences producing significant alignments: (Bits) Value gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein 450 3e-132 gi|115792|sp|P27493|CB22_TOBAC Chlorophyll a-b binding protei... 429 4e-126 gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (... 429 7e-126 gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-b... 429 1e-125 gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-b... 427 6e-125 gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein 426 6e-125 gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein 426 6e-125 gi|115805|sp|P27495|CB24_TOBAC Chlorophyll a-b binding protei... 425 8e-125 gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-b... 425 8e-125 gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-b... 425 8e-125 gi|115808|sp|P04783|CB25_PETSP Chlorophyll a-b binding protei... 426 1e-124 gi|115825|sp|P07369|CB2G_LYCES Chlorophyll a-b binding protei... 424 2e-124 gi|115819|sp|P07370|CB2B_LYCES Chlorophyll a-b binding protei... 424 2e-124 gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-b... 423 4e-124 gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein 423 4e-124 gi|224927|prf||1204205B protein 1B,chlorophyll binding 423 4e-124 gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-b... 422 7e-124 gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-b... 422 7e-124 gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-b... 422 1e-123 gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C 421 1e-123 gi|115810|sp|P27496|CB25_TOBAC Chlorophyll a-b binding protei... 422 2e-123 gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b bindin... 421 2e-123 gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (... 421 2e-123 gi|115812|sp|P27491|CB27_TOBAC Chlorophyll a-b binding protei... 422 3e-123 gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein 421 3e-123 gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein 421 3e-123 gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-li 419 6e-123 gi|115780|sp|P12333|CB2A_SPIOL Chlorophyll a-b binding protei... 419 1e-122 gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b 417 2e-122 gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding prot 419 2e-122 gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a... 416 5e-122 gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of ... 419 6e-122 gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-b 416 6e-122 gi|115781|sp|P27492|CB21_TOBAC Chlorophyll a-b binding protei... 416 8e-122 gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b 414 1e-121 gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesem 413 3e-121 gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-b... 412 5e-121 gi|115795|sp|P12469|CB23_NICPL Chlorophyll a-b binding protei... 412 7e-121 gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagu 415 7e-121 gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesem 412 9e-121 gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesem 412 9e-121 gi|115804|sp|P04782|CB24_PETSP Chlorophyll a-b binding protei... 411 1e-120 gi|115807|sp|P12470|CB25_NICPL Chlorophyll a-b binding protei... 413 1e-120 gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein 410 2e-120 gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-bi... 414 3e-120 gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding 410 3e-120 gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS I... 410 3e-120 gi|115798|sp|P04781|CB23_PETSP Chlorophyll a-b binding protei... 411 3e-120 gi|115800|sp|P09756|CB23_SOYBN Chlorophyll a-b binding protei... 412 3e-120 gi|115778|sp|P13851|CB21_SINAL Chlorophyll a-b binding protei... 409 6e-120 gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCA... 409 7e-120 gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding pro 409 7e-120 gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protei 409 7e-120 gi|115789|sp|P04780|CB22_PETSP Chlorophyll a-b binding protei... 410 1e-119 gi|115785|sp|P08963|CB22_HORVU Chlorophyll a-b binding protei... 407 2e-119 gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa (... 407 3e-119 gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b 407 3e-119 gi|14423661|sp|P92919|CB23_APIGR Chlorophyll a-b binding prot... 407 3e-119 gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding prot 409 4e-119 gi|115768|sp|P08221|CB21_CUCSA Chlorophyll a-b binding protei... 405 6e-119 gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa (... 405 8e-119 gi|15220615|ref|NP_174286.1| CAB1 (CHLOROPHYLL A/B BINDING PR... 405 1e-118 gi|92890755|gb|ABE90474.1| Chlorophyll A-B binding protein [Medi 407 1e-118 gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cice 405 2e-118 gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding pr... 403 3e-118 gi|115774|sp|P04779|CB21_PETSP Chlorophyll a-b binding protei... 403 3e-118 gi|18397286|ref|NP_564339.1| CAB3 (CHLOROPHYLL A/B BINDING PR... 404 4e-118 gi|115786|sp|P06671|CB22_MAIZE Chlorophyll a-b binding protei... 403 5e-118 gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Bras 402 7e-118 gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-bindin 404 9e-118 gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medic 402 9e-118 gi|115815|sp|P27497|CB29_MAIZE Chlorophyll a-b binding protei... 402 9e-118 gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [A... 401 2e-117 gi|18403546|ref|NP_565786.1| LHB1B2; chlorophyll binding [Ara... 400 3e-117 gi|18403549|ref|NP_565787.1| LHB1B1; chlorophyll binding [Ara... 398 1e-116 gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa (... 398 1e-116 gi|115782|sp|P04784|CB21_WHEAT Chlorophyll a-b binding protei... 400 2e-116 gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (... 397 2e-116 gi|115771|sp|P12329|CB21_MAIZE Chlorophyll a-b binding protei... 398 2e-116 gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trif 397 2e-116 gi|21592428|gb|AAM64379.1| putative photosystem II type I chl... 396 4e-116 gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b bindi 396 6e-116 gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza 397 8e-116 gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll... 394 1e-115 gi|115788|sp|P07371|CB22_PEA Chlorophyll a-b binding protein ... 394 3e-115 gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b b... 394 8e-115 gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding ... 396 3e-114 gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (... 389 7e-114 gi|115814|sp|P27490|CB28_PEA Chlorophyll a-b binding protein ... 389 2e-113 gi|115820|sp|P15194|CB2B_PINSY Chlorophyll a-b binding protei... 385 1e-112 gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare 385 1e-112 gi|226263|prf||1503276A chlorophyll a/b binding protein 384 1e-112 gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein; LHCPII 386 2e-112 gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b bin... 384 3e-112 gi|115779|sp|P12471|CB21_SOYBN Chlorophyll a-b binding protei... 385 3e-112 gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pin 384 8e-112 gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus 383 2e-111 gi|115791|sp|P09755|CB22_SOYBN Chlorophyll a-b binding protei... 380 2e-111 gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-b... 382 4e-111 gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-b... 379 3e-110
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 634 Number of extensions: 7 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 872 Length of database: 101054579 Length adjustment: 112 Effective length of query: 760 Effective length of database: 69319491 Effective search space: 12338869398 Effective search space used: 12338869398 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 67 (30.4 bits)