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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168943794-17796-67823049551.BLASTQ1


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,458,890 sequences; 1,532,996,420 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig203
Length=492

Distribution of 77 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|84620804|gb|ABC59516.1|  chloroplast photosystem II 22 kDa ...  61.6    1e-11
gi|1709846|sp|P54773|PSBS_LYCES  Photosystem II 22 kDa protein...  61.6    1e-11
gi|18202913|sp|Q9FPP4|PSBS_SOLSG  Photosystem II 22 kDa protei...  61.6    1e-11
gi|84620802|gb|ABC59515.1|  chloroplast photosystem II 22 kDa ...  61.6    1e-11
gi|18203444|sp|Q9SMB4|PSBS_TOBAC  Photosystem II 22 kDa protei...  61.6    1e-11
gi|33867383|gb|AAQ55066.1|  photosystem II subunit PsbS precursor  62.4    2e-11 UniGene infoGene info
gi|115461508|ref|NP_001054354.1|  Os04g0690800 [Oryza sativa (...  62.0    2e-11 Gene info
gi|1304215|dbj|BAA12337.1|  22 kDa protein of photosystem II p...  62.0    2e-11 UniGene info
gi|90399255|emb|CAH68096.1|  B0518A01.1 [Oryza sativa (indica ...  62.0    2e-11
gi|38345525|emb|CAE01809.2|  OSJNBa0039K24.28 [Oryza sativa (japo  62.0    2e-11 Gene info
gi|115441299|ref|NP_001044929.1|  Os01g0869800 [Oryza sativa (...  62.4    3e-11 Gene info
gi|106879623|emb|CAJ38395.1|  Photosystem II, 22 kDa Protein [Pla  60.1    4e-11
gi|15294226|gb|AAK95290.1|AF410304_1  unknown protein [Arabido...  60.8    1e-10 UniGene info
gi|15219418|ref|NP_175092.1|  NPQ4 (NONPHOTOCHEMICAL QUENCHING...  60.8    1e-10 UniGene infoGene info
gi|42571761|ref|NP_973971.1|  NPQ4 (NONPHOTOCHEMICAL QUENCHING) [  60.8    1e-10 UniGene infoGene info
gi|400890|sp|Q02060|PSBS_SPIOL  Photosystem II 22 kDa protein,...  58.9    2e-10
gi|71063184|gb|AAZ22183.1|  PSII subunit PsbS [Xerophyta humilis]  61.6    1e-09
gi|93004415|gb|ABE97120.1|  chloroplast PSII associated light-...  52.8    6e-07
gi|93004420|gb|ABE97125.1|  chloroplast PSII associated light-...  52.8    6e-07
gi|93004421|gb|ABE97126.1|  chloroplast PSII associated light-...  52.8    6e-07
gi|93004419|gb|ABE97124.1|  chloroplast PSII associated light-...  52.8    6e-07
gi|93004423|gb|ABE97128.1|  chloroplast PSII associated light-...  52.8    6e-07
gi|93004417|gb|ABE97122.1|  chloroplast PSII associated light-...  52.8    6e-07
gi|6006279|dbj|BAA84769.1|  photosystem II 22 kDa protein [Arabid  47.4    1e-05 UniGene info
gi|62319374|dbj|BAD94678.1|  Photosystem II chlorophyll-bindin...  47.4    3e-05 UniGene info
gi|115476914|ref|NP_001062053.1|  Os08g0478800 [Oryza sativa (...  29.3    7.4   Gene info
gi|54649972|dbj|BAD67137.1|  Lhc-like protein Lhl4 [Chlamydomo...  28.9    9.7   UniGene info
Alignments

>gi|84620804|gb|ABC59516.1|  chloroplast photosystem II 22 kDa component [Nicotiana benthamiana]
Length=277

 Score = 61.6 bits (148),  Expect(2) = 1e-11
 Identities = 30/35 (85%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +2

Query  386  MLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            M+GFAAS LGEAITGKG LAQL LETGIP YEAEP
Sbjct  109  MIGFAASLLGEAITGKGILAQLNLETGIPIYEAEP  143


 Score = 26.6 bits (57),  Expect(2) = 1e-11
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 0/24 (0%)
 Frame = +1

Query  337  GLVLPSQNELFVGRVAXAWFCCIL  408
            G+    QNELFVGRVA   F   L
Sbjct  93   GIGFTKQNELFVGRVAMIGFAASL  116


 Score = 47.0 bits (110),  Expect(2) = 2e-05
 Identities = 23/37 (62%), Positives = 25/37 (67%), Gaps = 0/37 (0%)
 Frame = +2

Query  380  LPMLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            L  LG A S +GE ITGKG LAQL  ETG+P  E EP
Sbjct  213  LAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP  249


 Score = 20.4 bits (41),  Expect(2) = 2e-05
 Identities = 8/9 (88%), Positives = 9/9 (100%), Gaps = 0/9 (0%)
 Frame = +1

Query  358  NELFVGRVA  384
            NELFVGR+A
Sbjct  206  NELFVGRLA  214


>gi|1709846|sp|P54773|PSBS_LYCES  Photosystem II 22 kDa protein, chloroplast precursor (CP22)
 gi|706853|gb|AAA63649.1|  22 kDa component of photosystem II
Length=276

 Score = 61.6 bits (148),  Expect(2) = 1e-11
 Identities = 30/35 (85%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +2

Query  386  MLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            M+GFAAS LGEAITGKG LAQL LETGIP YEAEP
Sbjct  108  MIGFAASLLGEAITGKGILAQLNLETGIPIYEAEP  142


 Score = 26.6 bits (57),  Expect(2) = 1e-11
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 0/24 (0%)
 Frame = +1

Query  337  GLVLPSQNELFVGRVAXAWFCCIL  408
            G+    QNELFVGRVA   F   L
Sbjct  92   GIGFTKQNELFVGRVAMIGFAASL  115


 Score = 47.0 bits (110),  Expect(2) = 2e-05
 Identities = 23/37 (62%), Positives = 25/37 (67%), Gaps = 0/37 (0%)
 Frame = +2

Query  380  LPMLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            L  LG A S +GE ITGKG LAQL  ETG+P  E EP
Sbjct  212  LAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP  248


 Score = 20.4 bits (41),  Expect(2) = 2e-05
 Identities = 8/9 (88%), Positives = 9/9 (100%), Gaps = 0/9 (0%)
 Frame = +1

Query  358  NELFVGRVA  384
            NELFVGR+A
Sbjct  205  NELFVGRLA  213


>gi|18202913|sp|Q9FPP4|PSBS_SOLSG  Photosystem II 22 kDa protein, chloroplast precursor (CP22)
 gi|12082782|gb|AAG48610.1|AF311720_1  photosystem II 22 kDa protein precursor [Solanum sogarandinum]
Length=276

 Score = 61.6 bits (148),  Expect(2) = 1e-11
 Identities = 30/35 (85%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +2

Query  386  MLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            M+GFAAS LGEAITGKG LAQL LETGIP YEAEP
Sbjct  108  MIGFAASLLGEAITGKGILAQLNLETGIPIYEAEP  142


 Score = 26.6 bits (57),  Expect(2) = 1e-11
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 0/24 (0%)
 Frame = +1

Query  337  GLVLPSQNELFVGRVAXAWFCCIL  408
            G+    QNELFVGRVA   F   L
Sbjct  92   GIGFTKQNELFVGRVAMIGFAASL  115


 Score = 47.0 bits (110),  Expect(2) = 2e-05
 Identities = 23/37 (62%), Positives = 25/37 (67%), Gaps = 0/37 (0%)
 Frame = +2

Query  380  LPMLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            L  LG A S +GE ITGKG LAQL  ETG+P  E EP
Sbjct  212  LAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP  248


 Score = 20.4 bits (41),  Expect(2) = 2e-05
 Identities = 8/9 (88%), Positives = 9/9 (100%), Gaps = 0/9 (0%)
 Frame = +1

Query  358  NELFVGRVA  384
            NELFVGR+A
Sbjct  205  NELFVGRLA  213


>gi|84620802|gb|ABC59515.1|  chloroplast photosystem II 22 kDa component [Nicotiana benthamiana]
Length=274

 Score = 61.6 bits (148),  Expect(2) = 1e-11
 Identities = 30/35 (85%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +2

Query  386  MLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            M+GFAAS LGEAITGKG LAQL LETGIP YEAEP
Sbjct  106  MIGFAASLLGEAITGKGILAQLNLETGIPIYEAEP  140


 Score = 26.6 bits (57),  Expect(2) = 1e-11
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 0/24 (0%)
 Frame = +1

Query  337  GLVLPSQNELFVGRVAXAWFCCIL  408
            G+    QNELFVGRVA   F   L
Sbjct  90   GIGFTKQNELFVGRVAMIGFAASL  113


 Score = 47.0 bits (110),  Expect(2) = 2e-05
 Identities = 23/37 (62%), Positives = 25/37 (67%), Gaps = 0/37 (0%)
 Frame = +2

Query  380  LPMLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            L  LG A S +GE ITGKG LAQL  ETG+P  E EP
Sbjct  210  LAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP  246


 Score = 20.4 bits (41),  Expect(2) = 2e-05
 Identities = 8/9 (88%), Positives = 9/9 (100%), Gaps = 0/9 (0%)
 Frame = +1

Query  358  NELFVGRVA  384
            NELFVGR+A
Sbjct  203  NELFVGRLA  211


>gi|18203444|sp|Q9SMB4|PSBS_TOBAC  Photosystem II 22 kDa protein, chloroplast precursor (CP22)
 gi|6103011|emb|CAA59007.1| UniGene info precursor of photosystem II subunit (22KDa) [Nicotiana tabacum]
Length=274

 Score = 61.6 bits (148),  Expect(2) = 1e-11
 Identities = 30/35 (85%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +2

Query  386  MLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            M+GFAAS LGEAITGKG LAQL LETGIP YEAEP
Sbjct  106  MIGFAASLLGEAITGKGILAQLNLETGIPIYEAEP  140


 Score = 26.6 bits (57),  Expect(2) = 1e-11
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 0/24 (0%)
 Frame = +1

Query  337  GLVLPSQNELFVGRVAXAWFCCIL  408
            G+    QNELFVGRVA   F   L
Sbjct  90   GIGFTKQNELFVGRVAMIGFAASL  113


 Score = 47.0 bits (110),  Expect(2) = 2e-05
 Identities = 23/37 (62%), Positives = 25/37 (67%), Gaps = 0/37 (0%)
 Frame = +2

Query  380  LPMLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            L  LG A S +GE ITGKG LAQL  ETG+P  E EP
Sbjct  210  LAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP  246


 Score = 20.4 bits (41),  Expect(2) = 2e-05
 Identities = 8/9 (88%), Positives = 9/9 (100%), Gaps = 0/9 (0%)
 Frame = +1

Query  358  NELFVGRVA  384
            NELFVGR+A
Sbjct  203  NELFVGRLA  211


>gi|33867383|gb|AAQ55066.1| UniGene infoGene info photosystem II subunit PsbS precursor [Zea mays]
Length=265

 Score = 62.4 bits (150),  Expect(2) = 2e-11
 Identities = 31/35 (88%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +2

Query  386  MLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            MLGFAAS LGEAITGKG LAQL LETGIP YEAEP
Sbjct  99   MLGFAASLLGEAITGKGILAQLNLETGIPIYEAEP  133


 Score = 25.4 bits (54),  Expect(2) = 2e-11
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 0/24 (0%)
 Frame = +1

Query  337  GLVLPSQNELFVGRVAXAWFCCIL  408
            G+    +NELFVGRVA   F   L
Sbjct  83   GIGFTKENELFVGRVAMLGFAASL  106


 Score = 46.6 bits (109),  Expect(2) = 2e-05
 Identities = 22/37 (59%), Positives = 26/37 (70%), Gaps = 0/37 (0%)
 Frame = +2

Query  380  LPMLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            +  LG A S +GE ITGKG LAQL +ETG+P  E EP
Sbjct  201  MAQLGVAFSIIGEIITGKGALAQLNIETGVPINEIEP  237


 Score = 20.8 bits (42),  Expect(2) = 2e-05
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = +1

Query  328  PLEGLVLPSQNELFVGRVA  384
            PL G      NELFVGR+A
Sbjct  186  PLFGFT--KSNELFVGRMA  202


>gi|115461508|ref|NP_001054354.1| Gene info Os04g0690800 [Oryza sativa (japonica cultivar-group)]
 gi|113565925|dbj|BAF16268.1| Gene info Os04g0690800 [Oryza sativa (japonica cultivar-group)]
Length=254

 Score = 62.0 bits (149),  Expect(2) = 2e-11
 Identities = 30/35 (85%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +2

Query  386  MLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            MLGFAAS LGEA+TGKG LAQL LETGIP YEAEP
Sbjct  88   MLGFAASLLGEAVTGKGILAQLNLETGIPIYEAEP  122


 Score = 25.4 bits (54),  Expect(2) = 2e-11
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 0/24 (0%)
 Frame = +1

Query  337  GLVLPSQNELFVGRVAXAWFCCIL  408
            G+    +NELFVGRVA   F   L
Sbjct  72   GIGFTKENELFVGRVAMLGFAASL  95


 Score = 47.8 bits (112),  Expect(2) = 1e-05
 Identities = 23/37 (62%), Positives = 26/37 (70%), Gaps = 0/37 (0%)
 Frame = +2

Query  380  LPMLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            L  LG A S +GE ITGKG LAQL +ETG+P  E EP
Sbjct  189  LAQLGIAFSLIGEIITGKGALAQLNIETGVPINEIEP  225


 Score = 20.4 bits (41),  Expect(2) = 1e-05
 Identities = 8/9 (88%), Positives = 9/9 (100%), Gaps = 0/9 (0%)
 Frame = +1

Query  358  NELFVGRVA  384
            NELFVGR+A
Sbjct  182  NELFVGRLA  190


>gi|1304215|dbj|BAA12337.1| UniGene info 22 kDa protein of photosystem II precursor [Oryza sativa (japonica 
cultivar-group)]
Length=254

 Score = 62.0 bits (149),  Expect(2) = 2e-11
 Identities = 30/35 (85%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +2

Query  386  MLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            MLGFAAS LGEA+TGKG LAQL LETGIP YEAEP
Sbjct  88   MLGFAASLLGEAVTGKGILAQLNLETGIPIYEAEP  122


 Score = 25.4 bits (54),  Expect(2) = 2e-11
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 0/24 (0%)
 Frame = +1

Query  337  GLVLPSQNELFVGRVAXAWFCCIL  408
            G+    +NELFVGRVA   F   L
Sbjct  72   GIGFTKENELFVGRVAMLGFAASL  95


 Score = 45.8 bits (107),  Expect(2) = 4e-05
 Identities = 22/37 (59%), Positives = 26/37 (70%), Gaps = 0/37 (0%)
 Frame = +2

Query  380  LPMLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            L  +G A S +GE ITGKG LAQL +ETG+P  E EP
Sbjct  189  LAHVGIAFSLIGEIITGKGALAQLNIETGVPINEIEP  225


 Score = 20.4 bits (41),  Expect(2) = 4e-05
 Identities = 8/9 (88%), Positives = 9/9 (100%), Gaps = 0/9 (0%)
 Frame = +1

Query  358  NELFVGRVA  384
            NELFVGR+A
Sbjct  182  NELFVGRLA  190


>gi|90399255|emb|CAH68096.1|  B0518A01.1 [Oryza sativa (indica cultivar-group)]
 gi|116311997|emb|CAJ86355.1|  H0814G11.22 [Oryza sativa (indica cultivar-group)]
Length=248

 Score = 62.0 bits (149),  Expect(2) = 2e-11
 Identities = 30/35 (85%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +2

Query  386  MLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            MLGFAAS LGEA+TGKG LAQL LETGIP YEAEP
Sbjct  82   MLGFAASLLGEAVTGKGILAQLNLETGIPIYEAEP  116


 Score = 25.4 bits (54),  Expect(2) = 2e-11
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 0/24 (0%)
 Frame = +1

Query  337  GLVLPSQNELFVGRVAXAWFCCIL  408
            G+    +NELFVGRVA   F   L
Sbjct  66   GIGFTKENELFVGRVAMLGFAASL  89


 Score = 47.8 bits (112),  Expect(2) = 1e-05
 Identities = 23/37 (62%), Positives = 26/37 (70%), Gaps = 0/37 (0%)
 Frame = +2

Query  380  LPMLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            L  LG A S +GE ITGKG LAQL +ETG+P  E EP
Sbjct  183  LAQLGIAFSLIGEIITGKGALAQLNIETGVPINEIEP  219


 Score = 20.4 bits (41),  Expect(2) = 1e-05
 Identities = 8/9 (88%), Positives = 9/9 (100%), Gaps = 0/9 (0%)
 Frame = +1

Query  358  NELFVGRVA  384
            NELFVGR+A
Sbjct  176  NELFVGRLA  184


>gi|38345525|emb|CAE01809.2| Gene info OSJNBa0039K24.28 [Oryza sativa (japonica cultivar-group)]
Length=248

 Score = 62.0 bits (149),  Expect(2) = 2e-11
 Identities = 30/35 (85%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +2

Query  386  MLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            MLGFAAS LGEA+TGKG LAQL LETGIP YEAEP
Sbjct  82   MLGFAASLLGEAVTGKGILAQLNLETGIPIYEAEP  116


 Score = 25.4 bits (54),  Expect(2) = 2e-11
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 0/24 (0%)
 Frame = +1

Query  337  GLVLPSQNELFVGRVAXAWFCCIL  408
            G+    +NELFVGRVA   F   L
Sbjct  66   GIGFTKENELFVGRVAMLGFAASL  89


 Score = 47.8 bits (112),  Expect(2) = 1e-05
 Identities = 23/37 (62%), Positives = 26/37 (70%), Gaps = 0/37 (0%)
 Frame = +2

Query  380  LPMLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            L  LG A S +GE ITGKG LAQL +ETG+P  E EP
Sbjct  183  LAQLGIAFSLIGEIITGKGALAQLNIETGVPINEIEP  219


 Score = 20.4 bits (41),  Expect(2) = 1e-05
 Identities = 8/9 (88%), Positives = 9/9 (100%), Gaps = 0/9 (0%)
 Frame = +1

Query  358  NELFVGRVA  384
            NELFVGR+A
Sbjct  176  NELFVGRLA  184


>gi|115441299|ref|NP_001044929.1| Gene info Os01g0869800 [Oryza sativa (japonica cultivar-group)]
 gi|15408693|dbj|BAB64099.1| Gene info putative photosystem II subunit PsbS [Oryza sativa (japonica 
cultivar-group)]
 gi|20160872|dbj|BAB89811.1| Gene info putative photosystem II subunit PsbS [Oryza sativa (japonica 
cultivar-group)]
 gi|113534460|dbj|BAF06843.1| Gene info Os01g0869800 [Oryza sativa (japonica cultivar-group)]
Length=268

 Score = 62.4 bits (150),  Expect(2) = 3e-11
 Identities = 31/35 (88%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +2

Query  386  MLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            MLGFAAS LGEAITGKG LAQL LETGIP YEAEP
Sbjct  101  MLGFAASILGEAITGKGILAQLNLETGIPIYEAEP  135


 Score = 24.6 bits (52),  Expect(2) = 3e-11
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 0/20 (0%)
 Frame = +1

Query  337  GLVLPSQNELFVGRVAXAWF  396
            G+    +NELFVGRVA   F
Sbjct  85   GIGFTKENELFVGRVAMLGF  104


 Score = 47.8 bits (112),  Expect(2) = 1e-05
 Identities = 23/37 (62%), Positives = 26/37 (70%), Gaps = 0/37 (0%)
 Frame = +2

Query  380  LPMLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            L  LG A S +GE ITGKG LAQL +ETG+P  E EP
Sbjct  204  LAQLGIAFSIIGEIITGKGALAQLNIETGVPINEIEP  240


 Score = 20.4 bits (41),  Expect(2) = 1e-05
 Identities = 8/9 (88%), Positives = 9/9 (100%), Gaps = 0/9 (0%)
 Frame = +1

Query  358  NELFVGRVA  384
            NELFVGR+A
Sbjct  197  NELFVGRLA  205


>gi|106879623|emb|CAJ38395.1|  Photosystem II, 22 kDa Protein [Plantago major]
Length=262

 Score = 60.1 bits (144),  Expect(2) = 4e-11
 Identities = 29/35 (82%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +2

Query  386  MLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            M+GFAAS LGEAITGKG LAQL LETGIP +EAEP
Sbjct  98   MIGFAASLLGEAITGKGILAQLNLETGIPIFEAEP  132


 Score = 26.6 bits (57),  Expect(2) = 4e-11
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 0/24 (0%)
 Frame = +1

Query  337  GLVLPSQNELFVGRVAXAWFCCIL  408
            G+    QNELFVGRVA   F   L
Sbjct  82   GIGFTKQNELFVGRVAMIGFAASL  105


 Score = 46.6 bits (109),  Expect(2) = 2e-05
 Identities = 22/37 (59%), Positives = 26/37 (70%), Gaps = 0/37 (0%)
 Frame = +2

Query  380  LPMLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            L  LG A S +GE +TGKG LAQL +ETG+P  E EP
Sbjct  198  LAQLGIAFSIIGEIVTGKGALAQLNVETGVPIGELEP  234


 Score = 20.4 bits (41),  Expect(2) = 2e-05
 Identities = 8/9 (88%), Positives = 9/9 (100%), Gaps = 0/9 (0%)
 Frame = +1

Query  358  NELFVGRVA  384
            NELFVGR+A
Sbjct  191  NELFVGRLA  199


>gi|15294226|gb|AAK95290.1|AF410304_1 UniGene info unknown protein [Arabidopsis thaliana]
 gi|25090250|gb|AAN72262.1| UniGene info At1g44575/T18F15 [Arabidopsis thaliana]
Length=265

 Score = 60.8 bits (146),  Expect(2) = 1e-10
 Identities = 29/35 (82%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +2

Query  386  MLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            M+GFAAS LGEA+TGKG LAQL LETGIP YEAEP
Sbjct  98   MIGFAASLLGEALTGKGILAQLNLETGIPIYEAEP  132


 Score = 24.3 bits (51),  Expect(2) = 1e-10
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 0/24 (0%)
 Frame = +1

Query  337  GLVLPSQNELFVGRVAXAWFCCIL  408
            G+     NELFVGRVA   F   L
Sbjct  82   GIGFTKANELFVGRVAMIGFAASL  105


 Score = 47.4 bits (111),  Expect(2) = 1e-05
 Identities = 23/37 (62%), Positives = 26/37 (70%), Gaps = 0/37 (0%)
 Frame = +2

Query  380  LPMLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            L  LG A S +GE ITGKG LAQL +ETGIP  + EP
Sbjct  200  LAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEP  236


 Score = 20.4 bits (41),  Expect(2) = 1e-05
 Identities = 8/9 (88%), Positives = 9/9 (100%), Gaps = 0/9 (0%)
 Frame = +1

Query  358  NELFVGRVA  384
            NELFVGR+A
Sbjct  193  NELFVGRLA  201


>gi|15219418|ref|NP_175092.1| UniGene infoGene info NPQ4 (NONPHOTOCHEMICAL QUENCHING) [Arabidopsis thaliana]
 gi|17380270|sp|Q9XF91|PSBS_ARATH Gene info Photosystem II 22 kDa protein, chloroplast precursor (CP22)
 gi|4741962|gb|AAD28778.1|AF134131_1 UniGene infoGene info PsbS protein [Arabidopsis thaliana]
 gi|13876505|gb|AAK43481.1|AC084807_6 Gene info photosystem II 22kDa protein, putative [Arabidopsis thaliana]
 gi|62320751|dbj|BAD95419.1| UniGene infoGene info Photosystem II chlorophyll-binding protein PsbS [Arabidopsis 
thaliana]
Length=265

 Score = 60.8 bits (146),  Expect(2) = 1e-10
 Identities = 29/35 (82%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +2

Query  386  MLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            M+GFAAS LGEA+TGKG LAQL LETGIP YEAEP
Sbjct  98   MIGFAASLLGEALTGKGILAQLNLETGIPIYEAEP  132


 Score = 24.3 bits (51),  Expect(2) = 1e-10
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 0/24 (0%)
 Frame = +1

Query  337  GLVLPSQNELFVGRVAXAWFCCIL  408
            G+     NELFVGRVA   F   L
Sbjct  82   GIGFTKANELFVGRVAMIGFAASL  105


 Score = 47.4 bits (111),  Expect(2) = 1e-05
 Identities = 23/37 (62%), Positives = 26/37 (70%), Gaps = 0/37 (0%)
 Frame = +2

Query  380  LPMLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            L  LG A S +GE ITGKG LAQL +ETGIP  + EP
Sbjct  200  LAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEP  236


 Score = 20.4 bits (41),  Expect(2) = 1e-05
 Identities = 8/9 (88%), Positives = 9/9 (100%), Gaps = 0/9 (0%)
 Frame = +1

Query  358  NELFVGRVA  384
            NELFVGR+A
Sbjct  193  NELFVGRLA  201


>gi|42571761|ref|NP_973971.1| UniGene infoGene info NPQ4 (NONPHOTOCHEMICAL QUENCHING) [Arabidopsis thaliana]
Length=205

 Score = 60.8 bits (146),  Expect(2) = 1e-10
 Identities = 29/35 (82%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +2

Query  386  MLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            M+GFAAS LGEA+TGKG LAQL LETGIP YEAEP
Sbjct  98   MIGFAASLLGEALTGKGILAQLNLETGIPIYEAEP  132


 Score = 24.3 bits (51),  Expect(2) = 1e-10
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 0/24 (0%)
 Frame = +1

Query  337  GLVLPSQNELFVGRVAXAWFCCIL  408
            G+     NELFVGRVA   F   L
Sbjct  82   GIGFTKANELFVGRVAMIGFAASL  105


>gi|400890|sp|Q02060|PSBS_SPIOL  Photosystem II 22 kDa protein, chloroplast precursor (CP22)
 gi|21307|emb|CAA48557.1|  22kD-protein of PSII [Spinacia oleracea]
 gi|260917|gb|AAB24338.1|  photosystem II 22 kda polypeptide [Spinacia oleracea]
Length=274

 Score = 58.9 bits (141),  Expect(2) = 2e-10
 Identities = 28/35 (80%), Positives = 30/35 (85%), Gaps = 0/35 (0%)
 Frame = +2

Query  386  MLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            M+GFAAS LGE ITGKG L+QL LETGIP YEAEP
Sbjct  107  MIGFAASLLGEGITGKGILSQLNLETGIPIYEAEP  141


 Score = 25.4 bits (54),  Expect(2) = 2e-10
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 0/24 (0%)
 Frame = +1

Query  337  GLVLPSQNELFVGRVAXAWFCCIL  408
            G+    +NELFVGRVA   F   L
Sbjct  91   GIGFTKENELFVGRVAMIGFAASL  114


 Score = 50.1 bits (118),  Expect(2) = 8e-07
 Identities = 24/37 (64%), Positives = 27/37 (72%), Gaps = 0/37 (0%)
 Frame = +2

Query  380  LPMLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            L  LGFA S +GE ITGKG LAQL +ETG+P  E EP
Sbjct  209  LAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEP  245


 Score = 21.9 bits (45),  Expect(2) = 8e-07
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query  307  LKMVSLAPLEGLVLPSQNELFVGRVAXAWF  396
            L + +  PL G      NELFVGR+A   F
Sbjct  187  LGLKTKGPLFGFT--KSNELFVGRLAQLGF  214


>gi|71063184|gb|AAZ22183.1|  PSII subunit PsbS [Xerophyta humilis]
Length=159

 Score = 61.6 bits (148),  Expect = 1e-09
 Identities = 30/35 (85%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +2

Query  386  MLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            M+GFAAS LGEAITGKG LAQL LETGIP YEAEP
Sbjct  6    MIGFAASLLGEAITGKGILAQLNLETGIPIYEAEP  40


 Score = 47.0 bits (110),  Expect(2) = 1e-05
 Identities = 22/37 (59%), Positives = 26/37 (70%), Gaps = 0/37 (0%)
 Frame = +2

Query  380  LPMLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            L  LG A S +GE ITGKG LAQL +ETG+P  + EP
Sbjct  110  LAQLGIAFSLIGEVITGKGALAQLNIETGVPISDIEP  146


 Score = 20.8 bits (42),  Expect(2) = 1e-05
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +1

Query  307  LKMVSLAPLEGLVLPSQNELFVGRVA  384
            L + S  PL G      NELFVGR+A
Sbjct  88   LGLNSDGPLFGFT--KANELFVGRLA  111


>gi|93004415|gb|ABE97120.1|  chloroplast PSII associated light-harvesting complex II protein 
[Solanum chmielewskii]
 gi|93004416|gb|ABE97121.1|  chloroplast PSII associated light-harvesting complex II protein 
[Solanum pimpinellifolium]
 gi|93004418|gb|ABE97123.1|  chloroplast PSII associated light-harvesting complex II protein 
[Solanum habrochaites]
 gi|93004422|gb|ABE97127.1|  chloroplast PSII associated light-harvesting complex II protein 
[Solanum pennellii]
Length=47

 Score = 52.8 bits (125),  Expect = 6e-07
 Identities = 26/30 (86%), Positives = 26/30 (86%), Gaps = 0/30 (0%)
 Frame = +2

Query  401  ASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            AS LGEAITGKG LAQL LETGIP YEAEP
Sbjct  1    ASLLGEAITGKGILAQLNLETGIPIYEAEP  30


>gi|93004420|gb|ABE97125.1|  chloroplast PSII associated light-harvesting complex II protein 
[Solanum chilense]
Length=49

 Score = 52.8 bits (125),  Expect = 6e-07
 Identities = 26/30 (86%), Positives = 26/30 (86%), Gaps = 0/30 (0%)
 Frame = +2

Query  401  ASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            AS LGEAITGKG LAQL LETGIP YEAEP
Sbjct  1    ASLLGEAITGKGILAQLNLETGIPIYEAEP  30


>gi|93004421|gb|ABE97126.1|  chloroplast PSII associated light-harvesting complex II protein 
[Solanum cheesmaniae]
Length=51

 Score = 52.8 bits (125),  Expect = 6e-07
 Identities = 26/30 (86%), Positives = 26/30 (86%), Gaps = 0/30 (0%)
 Frame = +2

Query  401  ASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            AS LGEAITGKG LAQL LETGIP YEAEP
Sbjct  1    ASLLGEAITGKGILAQLNLETGIPIYEAEP  30


>gi|93004419|gb|ABE97124.1|  chloroplast PSII associated light-harvesting complex II protein 
[Solanum lycopersicum]
Length=52

 Score = 52.8 bits (125),  Expect = 6e-07
 Identities = 26/30 (86%), Positives = 26/30 (86%), Gaps = 0/30 (0%)
 Frame = +2

Query  401  ASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            AS LGEAITGKG LAQL LETGIP YEAEP
Sbjct  1    ASLLGEAITGKGILAQLNLETGIPIYEAEP  30


>gi|93004423|gb|ABE97128.1|  chloroplast PSII associated light-harvesting complex II protein 
[Solanum lycopersicoides]
Length=48

 Score = 52.8 bits (125),  Expect = 6e-07
 Identities = 26/30 (86%), Positives = 26/30 (86%), Gaps = 0/30 (0%)
 Frame = +2

Query  401  ASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            AS LGEAITGKG LAQL LETGIP YEAEP
Sbjct  1    ASLLGEAITGKGILAQLNLETGIPIYEAEP  30


>gi|93004417|gb|ABE97122.1|  chloroplast PSII associated light-harvesting complex II protein 
[Solanum arcanum]
Length=46

 Score = 52.8 bits (125),  Expect = 6e-07
 Identities = 26/30 (86%), Positives = 26/30 (86%), Gaps = 0/30 (0%)
 Frame = +2

Query  401  ASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            AS LGEAITGKG LAQL LETGIP YEAEP
Sbjct  1    ASLLGEAITGKGILAQLNLETGIPIYEAEP  30


>gi|6006279|dbj|BAA84769.1| UniGene info photosystem II 22 kDa protein [Arabidopsis thaliana]
Length=155

 Score = 47.4 bits (111),  Expect(2) = 1e-05
 Identities = 23/37 (62%), Positives = 26/37 (70%), Gaps = 0/37 (0%)
 Frame = +2

Query  380  LPMLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            L  LG A S +GE ITGKG LAQL +ETGIP  + EP
Sbjct  90   LAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEP  126


 Score = 20.4 bits (41),  Expect(2) = 1e-05
 Identities = 8/9 (88%), Positives = 9/9 (100%), Gaps = 0/9 (0%)
 Frame = +1

Query  358  NELFVGRVA  384
            NELFVGR+A
Sbjct  83   NELFVGRLA  91


 Score = 41.2 bits (95),  Expect = 0.002
 Identities = 19/22 (86%), Positives = 19/22 (86%), Gaps = 0/22 (0%)
 Frame = +2

Query  425  TGKGXLAQLXLETGIPXYEAEP  490
            TGKG LAQL LETGIP YEAEP
Sbjct  1    TGKGILAQLNLETGIPIYEAEP  22


>gi|62319374|dbj|BAD94678.1| UniGene info Photosystem II chlorophyll-binding protein PsbS [Arabidopsis 
thaliana]
Length=66

 Score = 47.4 bits (111),  Expect = 3e-05
 Identities = 23/37 (62%), Positives = 26/37 (70%), Gaps = 0/37 (0%)
 Frame = +2

Query  380  LPMLGFAASXLGEAITGKGXLAQLXLETGIPXYEAEP  490
            L  LG A S +GE ITGKG LAQL +ETGIP  + EP
Sbjct  1    LAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEP  37


>gi|115476914|ref|NP_001062053.1| Gene info Os08g0478800 [Oryza sativa (japonica cultivar-group)]
 gi|42408569|dbj|BAD09746.1| Gene info putative glucose-6-phosphate isomerase precursor [Oryza sativa 
(japonica cultivar-group)]
 gi|113624022|dbj|BAF23967.1| Gene info Os08g0478800 [Oryza sativa (japonica cultivar-group)]
Length=615

 Score = 29.3 bits (64),  Expect = 7.4
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query  320  LWHLWRDWFYQAKMSSLLDALPMLGFAASXLG--EAITGKGXLAQLXLETG  466
            LW+ + +W YQ K   L   +  +GF    L   EA  G+   A   LE G
Sbjct  83   LWNRYVEWLYQHKQLGLFVDVSRIGFTEEFLRRMEAPMGRAFAAMRELEKG  133


>gi|54649972|dbj|BAD67137.1| UniGene info Lhc-like protein Lhl4 [Chlamydomonas reinhardtii]
 gi|54649974|dbj|BAD67138.1|  Lhc-like protein Lhl4 [Chlamydomonas reinhardtii]
Length=285

 Score = 28.9 bits (63),  Expect = 9.7
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 0/25 (0%)
 Frame = +2

Query  386  MLGFAASXLGEAITGKGXLAQLXLE  460
            M+GF +S + E  TGKG LAQ+ L+
Sbjct  68   MMGFVSSIVVEFATGKGTLAQVGLD  92







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 289
Number of extensions: 5
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 492
Length of database: 101054579
Length adjustment: 104
Effective length of query: 388
Effective length of database: 71586283
Effective search space: 4295176980
Effective search space used: 4295176980
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 63 (28.9 bits)