>gi|110377772|gb|ABG73416.1|  chloroplast pigment-binding protein CP24 [Nicotiana tabacum]
Length=257

 Score = 68.9 bits (167),  Expect(2) = 7e-20
 Identities = 28/33 (84%), Positives = 31/33 (93%), Gaps = 0/33 (0%)
 Frame = +3

Query  267  AAAPKKSWIPGVRGGGNFINPEWLDGSLPGDYG  365
            AAAPKKSWIP V+GGGN ++PEWLDGSLPGDYG
Sbjct  49   AAAPKKSWIPAVKGGGNLLDPEWLDGSLPGDYG  81


 Score = 46.6 bits (109),  Expect(2) = 7e-20
 Identities = 24/37 (64%), Positives = 25/37 (67%), Gaps = 0/37 (0%)
 Frame = +2

Query  131  MAATSGTVINGLGSPFLCGGKRSQALLGARVATPASG  241
            MA TS  V+NGL S FL GGK SQALLGA VA    G
Sbjct  1    MATTSAAVLNGLSSSFLTGGKNSQALLGAPVAARIGG  37


>gi|115833|sp|P27524|CB4A_LYCES  Chlorophyll a-b binding protein CP24 10A, chloroplast precursor 
(CAB-10A) (LHCP)
 gi|170394|gb|AAA34143.1|  a-binding protein
Length=256

 Score = 67.4 bits (163),  Expect(2) = 4e-18
 Identities = 28/33 (84%), Positives = 30/33 (90%), Gaps = 0/33 (0%)
 Frame = +3

Query  267  AAAPKKSWIPGVRGGGNFINPEWLDGSLPGDYG  365
            AAA KKSWIP VRGGGN ++PEWLDGSLPGDYG
Sbjct  48   AAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYG  80


 Score = 42.4 bits (98),  Expect(2) = 4e-18
 Identities = 21/37 (56%), Positives = 24/37 (64%), Gaps = 0/37 (0%)
 Frame = +2

Query  131  MAATSGTVINGLGSPFLCGGKRSQALLGARVATPASG  241
            MA TS  V+NGL S FL GG +SQALL A +A    G
Sbjct  1    MATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGG  37


>gi|115834|sp|P27525|CB4B_LYCES  Chlorophyll a-b binding protein CP24 10B, chloroplast precursor 
(CAB-10B) (LHCP)
 gi|170400|gb|AAA34146.1|  chlorophyll b-binding protein
Length=256

 Score = 63.9 bits (154),  Expect(2) = 2e-17
 Identities = 25/33 (75%), Positives = 29/33 (87%), Gaps = 0/33 (0%)
 Frame = +3

Query  267  AAAPKKSWIPGVRGGGNFINPEWLDGSLPGDYG  365
            A APKKSWIP V+ GGN ++PEWLDGSLPGD+G
Sbjct  48   AVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFG  80


 Score = 43.1 bits (100),  Expect(2) = 2e-17
 Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = +2

Query  131  MAATSGT-VINGLGSPFLCGGKRSQALLGARVATPASGTRKLVV  259
            M  TS T V+NGL S FL GGK++QALLGA V    +  ++ VV
Sbjct  1    MTTTSATAVLNGLSSSFLTGGKKTQALLGAHVTARVTTPKRFVV  44


>gi|543939|sp|P36494|CB4_SPIOL  Chlorophyll a-b binding protein CP24, chloroplast precursor
 gi|437991|emb|CAA81105.1|  20 kDa protein of CP24 precursor protein [Spinacia oleracea]
Length=261

 Score = 69.7 bits (169),  Expect(2) = 3e-17
 Identities = 28/33 (84%), Positives = 32/33 (96%), Gaps = 0/33 (0%)
 Frame = +3

Query  267  AAAPKKSWIPGVRGGGNFINPEWLDGSLPGDYG  365
            AAAPKKSWIP V+GGGNF++PEWLDGSLPGD+G
Sbjct  53   AAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFG  85


 Score = 37.0 bits (84),  Expect(2) = 3e-17
 Identities = 28/51 (54%), Positives = 34/51 (66%), Gaps = 11/51 (21%)
 Frame = +2

Query  134  AATSGT-VINGLGSPFLCGGKR-SQALL------GARVATPASGTRKLVVV  262
            AATS T ++NG  SPFL GGK+ SQ+LL      GA V+T    +RKLVVV
Sbjct  3    AATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTT---SRKLVVV  50


>gi|15218330|ref|NP_173034.1|  LHCB6; chlorophyll binding [Arabidopsis thaliana]
 gi|8927661|gb|AAF82152.1|AC034256_16  Identical to Lhcb6 protein from Arabidopsis thaliana gb|AF134130 
and is a member of the Chlorophyll A-B binding proteins 
PF|00504.  ESTs gb|AI100562, gb|AI999227, gb|AA067457, gb|BE037598, 
gb|BE039058, gb|BE038945, gb|BE038657, gb|BE038604, 
gb|H76294, gb|H77256, gb|N65776, gb|N38000, gb|R90377, gb|R90578, 
gb|R90082, gb|T44923, gb|T76598, gb|T04144, gb|T43786, 
gb|T76834, gb|T04153, gb|T45475, gb|T76179, gb|T46781, gb|T45938, 
gb|T45430, gb|W43165, gb|Z18774 come from this gene
 gi|12083258|gb|AAG48788.1|AF332425_1  putative chlorophyll binding protein [Arabidopsis thaliana]
 gi|17473665|gb|AAL38289.1|  Lhcb6 protein [Arabidopsis thaliana]
 gi|20148631|gb|AAM10206.1|  chlorophyll A-B binding protein [Arabidopsis thaliana]
Length=258

 Score = 67.8 bits (164),  Expect(2) = 5e-17
 Identities = 27/33 (81%), Positives = 31/33 (93%), Gaps = 0/33 (0%)
 Frame = +3

Query  267  AAAPKKSWIPGVRGGGNFINPEWLDGSLPGDYG  365
            AA PKKSWIP V+GGGNF++PEWLDGSLPGD+G
Sbjct  50   AAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFG  82


 Score = 38.1 bits (87),  Expect(2) = 5e-17
 Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +2

Query  137  ATSGTVINGLGSPFLCGGKRSQALLGARVATPAS--GTRKLVV  259
            A SG V++GLGS FL GGKR    L + V T A   G + L+V
Sbjct  4    AVSGAVLSGLGSSFLTGGKRGATALASGVGTGAQRVGRKTLIV  46


>gi|4741960|gb|AAD28777.1|AF134130_1  Lhcb6 protein [Arabidopsis thaliana]
Length=258

 Score = 67.8 bits (164),  Expect(2) = 9e-17
 Identities = 27/33 (81%), Positives = 31/33 (93%), Gaps = 0/33 (0%)
 Frame = +3

Query  267  AAAPKKSWIPGVRGGGNFINPEWLDGSLPGDYG  365
            AA PKKSWIP V+GGGNF++PEWLDGSLPGD+G
Sbjct  50   AAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFG  82


 Score = 37.4 bits (85),  Expect(2) = 9e-17
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +2

Query  137  ATSGTVINGLGSPFLCGGKRSQALLGARVATPAS--GTRKLVV  259
            A SG V++G+GS FL GGKR    L + V T A   G + L+V
Sbjct  4    AVSGAVLSGIGSSFLTGGKRGATALASGVGTGAQRVGRKTLIV  46


>gi|50313237|gb|AAT74560.1|  Lhcb6 protein [Brassica rapa subsp. pekinensis]
Length=254

 Score = 67.8 bits (164),  Expect(2) = 3e-16
 Identities = 27/33 (81%), Positives = 31/33 (93%), Gaps = 0/33 (0%)
 Frame = +3

Query  267  AAAPKKSWIPGVRGGGNFINPEWLDGSLPGDYG  365
            AA PKKSWIP V+GGGNF++PEWLDGSLPGD+G
Sbjct  46   AAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFG  78


 Score = 35.4 bits (80),  Expect(2) = 3e-16
 Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
 Frame = +2

Query  152  VINGLGSPFLCGGKRSQALLGARVATPAS--GTRKLVV  259
            V++GLGS FL GGKRS   LG+ V T A+  G + L+V
Sbjct  5    VLSGLGSSFLPGGKRSITALGSGVGTGAARFGRKTLIV  42


>gi|8954298|gb|AAD27882.2|AF139470_1  chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
Length=258

 Score = 71.2 bits (173),  Expect = 1e-12
 Identities = 29/33 (87%), Positives = 32/33 (96%), Gaps = 0/33 (0%)
 Frame = +3

Query  267  AAAPKKSWIPGVRGGGNFINPEWLDGSLPGDYG  365
            AAAPKKSWIPGVRGGGN ++PEWLDGSLPGD+G
Sbjct  50   AAAPKKSWIPGVRGGGNLVDPEWLDGSLPGDFG  82


 Score = 47.0 bits (110),  Expect = 2e-05
 Identities = 30/59 (50%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
 Frame = +2

Query  134  AATSGTVINGLGSPFLCGGKRSQALL----GARVATPASGTRKLVVVDCCCT*KVLDPG  298
            AATSG V+NGLGS FL GG RSQ LL    G +V    S  R+L+VV      K   PG
Sbjct  3    AATSGAVLNGLGSSFLSGGSRSQTLLATSIGGKVGVAVS-PRRLIVVAAAAPKKSWIPG  60


>gi|733458|gb|AAA64416.1|  chlorophyll a/b-binding apoprotein CP24 precursor
Length=247

 Score = 54.3 bits (129),  Expect = 1e-07
 Identities = 21/33 (63%), Positives = 25/33 (75%), Gaps = 0/33 (0%)
 Frame = +3

Query  267  AAAPKKSWIPGVRGGGNFINPEWLDGSLPGDYG  365
            AAA KKSWIP ++     +NP WLDGSLPGD+G
Sbjct  39   AAAAKKSWIPAIKSDAEIVNPPWLDGSLPGDFG  71


>gi|116309995|emb|CAH67022.1|  H0523F07.10 [Oryza sativa (indica cultivar-group)]
Length=252

 Score = 51.2 bits (121),  Expect = 1e-06
 Identities = 20/29 (68%), Positives = 22/29 (75%), Gaps = 0/29 (0%)
 Frame = +3

Query  279  KKSWIPGVRGGGNFINPEWLDGSLPGDYG  365
            KKSWIP  +    FINP WLDGSLPGD+G
Sbjct  48   KKSWIPAFKSDAEFINPPWLDGSLPGDFG  76


>gi|115458738|ref|NP_001052969.1|  Os04g0457000 [Oryza sativa (japonica cultivar-group)]
 gi|21740892|emb|CAD40888.1|  OSJNBa0036B21.6 [Oryza sativa (japonica cultivar-group)]
 gi|113564540|dbj|BAF14883.1|  Os04g0457000 [Oryza sativa (japonica cultivar-group)]
Length=252

 Score = 51.2 bits (121),  Expect = 1e-06
 Identities = 20/29 (68%), Positives = 22/29 (75%), Gaps = 0/29 (0%)
 Frame = +3

Query  279  KKSWIPGVRGGGNFINPEWLDGSLPGDYG  365
            KKSWIP  +    FINP WLDGSLPGD+G
Sbjct  48   KKSWIPAFKSDAEFINPPWLDGSLPGDFG  76


>gi|81472|pir||S03275  photosystem II 22K protein - spinach (fragment)
Length=25

 Score = 51.2 bits (121),  Expect = 1e-06
 Identities = 20/24 (83%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = +3

Query  267  AAAPKKSWIPGVRGGGNFINPEWL  338
            AAAPKKSWIP V+GGGNF++PEWL
Sbjct  2    AAAPKKSWIPAVKGGGNFLDPEWL  25


>gi|110739364|dbj|BAF01594.1|  hypothetical protein [Arabidopsis thaliana]
Length=94

 Score = 39.3 bits (90),  Expect = 0.004
 Identities = 17/22 (77%), Positives = 18/22 (81%), Gaps = 0/22 (0%)
 Frame = -2

Query  364  P*SPGRDPSSHSGLMKLPPPLT  299
            P SPG +PSSHSG  KLPPPLT
Sbjct  72   PKSPGSEPSSHSGSRKLPPPLT  93


>gi|13877547|gb|AAK43851.1|AF370474_1  chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
 gi|23198310|gb|AAN15682.1|  chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length=290

 Score = 37.4 bits (85),  Expect = 0.016
 Identities = 21/43 (48%), Positives = 23/43 (53%), Gaps = 17/43 (39%)
 Frame = +3

Query  270  AAPKKS-----------WIPGVRGGGNFINPEWLDGSLPGDYG  365
            AAPKKS           W PG       I+P+WLDGSL GDYG
Sbjct  41   AAPKKSAKKTVTTDRPLWYPGA------ISPDWLDGSLVGDYG  77


>gi|20260162|gb|AAM12979.1|  chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length=290

 Score = 37.4 bits (85),  Expect = 0.016
 Identities = 21/43 (48%), Positives = 23/43 (53%), Gaps = 17/43 (39%)
 Frame = +3

Query  270  AAPKKS-----------WIPGVRGGGNFINPEWLDGSLPGDYG  365
            AAPKKS           W PG       I+P+WLDGSL GDYG
Sbjct  41   AAPKKSAKKTVTTDRPVWYPGA------ISPDWLDGSLVGDYG  77


>gi|15081739|gb|AAK82524.1|  AT5g01530/F7A7_50 [Arabidopsis thaliana]
Length=290

 Score = 37.4 bits (85),  Expect = 0.016
 Identities = 21/43 (48%), Positives = 23/43 (53%), Gaps = 17/43 (39%)
 Frame = +3

Query  270  AAPKKS-----------WIPGVRGGGNFINPEWLDGSLPGDYG  365
            AAPKKS           W PG       I+P+WLDGSL GDYG
Sbjct  41   AAPKKSAKKTVTTDRPLWYPGA------ISPDWLDGSLVGDYG  77


>gi|15241005|ref|NP_195773.1|  chlorophyll binding [Arabidopsis thaliana]
 gi|38502901|sp|Q07473|CB4A_ARATH  Chlorophyll a-b binding protein CP29.1, chloroplast precursor 
(LHCII protein 4.1) (LHCB4.1)
 gi|298036|emb|CAA50712.1|  CP29 [Arabidopsis thaliana]
 gi|7327812|emb|CAB82269.1|  chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
 gi|15081815|gb|AAK82562.1|  AT5g01530/F7A7_50 [Arabidopsis thaliana]
 gi|16323075|gb|AAL15272.1|  AT5g01530/F7A7_50 [Arabidopsis thaliana]
 gi|16648983|gb|AAL24343.1|  chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
 gi|20148703|gb|AAM10242.1|  chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
 gi|22137102|gb|AAM91396.1|  At5g01530/F7A7_50 [Arabidopsis thaliana]
 gi|110741014|dbj|BAE98601.1|  Lhcb4- protein [Arabidopsis thaliana]
Length=290

 Score = 37.4 bits (85),  Expect = 0.016
 Identities = 21/43 (48%), Positives = 23/43 (53%), Gaps = 17/43 (39%)
 Frame = +3

Query  270  AAPKKS-----------WIPGVRGGGNFINPEWLDGSLPGDYG  365
            AAPKKS           W PG       I+P+WLDGSL GDYG
Sbjct  41   AAPKKSAKKTVTTDRPLWYPGA------ISPDWLDGSLVGDYG  77


>gi|92871882|gb|ABE80774.1|  Chlorophyll A-B binding protein [Medicago truncatula]
Length=289

 Score = 36.2 bits (82),  Expect = 0.035
 Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 17/43 (39%)
 Frame = +3

Query  270  AAPKKS-----------WIPGVRGGGNFINPEWLDGSLPGDYG  365
            AAPKK            W PG +      +PEWLDGSL GDYG
Sbjct  40   AAPKKPSRSSPSTDRPLWFPGAK------SPEWLDGSLVGDYG  76


>gi|551047|emb|CAA55864.1|  type II LHCI [Lolium temulentum]
Length=253

 Score = 35.8 bits (81),  Expect = 0.046
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
 Frame = +3

Query  264  TAAAPKKSWIPGVRGGGNFINPEWLDGSLPGDYG  365
            TAA  +  W PG         P WLDGSLPGD+G
Sbjct  43   TAAPERPIWFPGSTP------PPWLDGSLPGDFG  70


>gi|4689382|gb|AAD27878.1|AF139466_1  chlorophyll a/b binding protein CP29 [Vigna radiata]
Length=290

 Score = 35.4 bits (80),  Expect = 0.061
 Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 16/42 (38%)
 Frame = +3

Query  270  AAPKKS----------WIPGVRGGGNFINPEWLDGSLPGDYG  365
            AAPKK           W PG +       PEWLDGSL GDYG
Sbjct  41   AAPKKVSKGPSTDRPLWYPGAKA------PEWLDGSLVGDYG  76


>gi|666054|emb|CAA59049.1|  LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp. 
vulgare]
Length=255

 Score = 35.4 bits (80),  Expect = 0.061
 Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 7/34 (20%)
 Frame = +3

Query  267  AAAPKKS-WIPGVRGGGNFINPEWLDGSLPGDYG  365
            AAAP++  W PG         P WLDGSLPGD+G
Sbjct  45   AAAPERPIWFPGSTP------PPWLDGSLPGDFG  72


>gi|15233120|ref|NP_191706.1|  LHCA2; chlorophyll binding [Arabidopsis thaliana]
 gi|6850838|emb|CAB71077.1|  Lhca2 protein [Arabidopsis thaliana]
Length=257

 Score = 34.7 bits (78),  Expect = 0.10
 Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
 Frame = +3

Query  267  AAAPKKS-WIPGVRGGGNFINPEWLDGSLPGDYG  365
            AA P +  W PG         PEWLDGSLPGD+G
Sbjct  47   AADPDRPIWFPGSTP------PEWLDGSLPGDFG  74


>gi|2306981|gb|AAB65793.1|  photosystem I antenna protein [Oryza sativa]
Length=265

 Score = 34.7 bits (78),  Expect = 0.10
 Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
 Frame = +3

Query  267  AAAPKKS-WIPGVRGGGNFINPEWLDGSLPGDYG  365
            AAAP +  W PG         P WLDGSLPGD+G
Sbjct  54   AAAPDRPIWFPGSTP------PPWLDGSLPGDFG  81


>gi|4741940|gb|AAD28767.1|AF134120_1  Lhca2 protein [Arabidopsis thaliana]
 gi|15451180|gb|AAK96861.1|  Lhca2 protein [Arabidopsis thaliana]
 gi|17529286|gb|AAL38870.1|  putative Lhca2 protein [Arabidopsis thaliana]
 gi|18377464|gb|AAL66898.1|  Lhca2 protein [Arabidopsis thaliana]
 gi|25083456|gb|AAN72081.1|  Lhca2 protein [Arabidopsis thaliana]
Length=257

 Score = 34.7 bits (78),  Expect = 0.10
 Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
 Frame = +3

Query  267  AAAPKKS-WIPGVRGGGNFINPEWLDGSLPGDYG  365
            AA P +  W PG         PEWLDGSLPGD+G
Sbjct  47   AADPDRPIWFPGSTP------PEWLDGSLPGDFG  74


>gi|40714513|dbj|BAD06920.1|  light-harvesting chlorophyll-a/b protein of photosystem I [Chlamydomonas 
reinhardtii]
Length=257

 Score = 34.7 bits (78),  Expect = 0.10
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
 Frame = +3

Query  267  AAAPKKSWIPGVRGGGNFINPEWLDGSLPGDYG  365
            AAA +K W PGV      + PE+L G L GDYG
Sbjct  28   AAADRKLWAPGV------VAPEYLKGDLAGDYG  54


>gi|115472983|ref|NP_001060090.1|  Os07g0577600 [Oryza sativa (japonica cultivar-group)]
 gi|34393511|dbj|BAC83072.1|  putative photosystem I antenna protein [Oryza sativa (japonica 
cultivar-group)]
 gi|113611626|dbj|BAF22004.1|  Os07g0577600 [Oryza sativa (japonica cultivar-group)]
Length=263

 Score = 34.7 bits (78),  Expect = 0.10
 Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
 Frame = +3

Query  267  AAAPKKS-WIPGVRGGGNFINPEWLDGSLPGDYG  365
            AAAP +  W PG         P WLDGSLPGD+G
Sbjct  53   AAAPDRPIWFPGSTP------PPWLDGSLPGDFG  80


>gi|115473603|ref|NP_001060400.1|  Os07g0637200 [Oryza sativa (japonica cultivar-group)]
 gi|33146722|dbj|BAC79527.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113611936|dbj|BAF22314.1|  Os07g0637200 [Oryza sativa (japonica cultivar-group)]
Length=652

 Score = 34.7 bits (78),  Expect = 0.10
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 0/69 (0%)
 Frame = -2

Query  352  GRDPSSHSGLMKLPPPLTPGIQDFLGAAAVYNYQLPSSRSRGCHSSTQQGLAPLSSTKKW  173
            G +P  H       P     I      + ++++ L S R+  C  S     AP +  + W
Sbjct  332  GYNPKHHKPHTSQSPRPQNSITHPHSGSEIFHHTLSSQRTNSCSPSAGHNGAPTAPLQSW  391

Query  172  RPQPVYHSP  146
               P YHSP
Sbjct  392  PSAPPYHSP  400


>gi|115766|sp|P13869|CB12_PETHY  Chlorophyll a-b binding protein, chloroplast precursor (LHCI 
type II CAB)
 gi|169214|gb|AAA33711.1|  chlorophyll binding protein precursor
 gi|226259|prf||1503272A  chlorophyll binding protein
Length=270

 Score = 34.7 bits (78),  Expect = 0.10
 Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
 Frame = +3

Query  267  AAAPKKS-WIPGVRGGGNFINPEWLDGSLPGDYG  365
            AA P +  W PG         PEWLDGSLPGD+G
Sbjct  60   AADPDRPLWFPGSTP------PEWLDGSLPGDFG  87


>gi|27754356|gb|AAO22627.1|  putative light-harvesting chlorophyll a/b binding protein [Arabidopsis 
thaliana]
Length=270

 Score = 34.3 bits (77),  Expect = 0.13
 Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 6/26 (23%)
 Frame = +3

Query  288  WIPGVRGGGNFINPEWLDGSLPGDYG  365
            W PG         PEWLDGSLPGD+G
Sbjct  68   WFPGSSP------PEWLDGSLPGDFG  87


>gi|8954053|gb|AAF82226.1|AC069143_2  Contains similarity to a chlorophyll a/b-binding protein type 
II from Arabidopsis thaliana gi|S46295 and contains a chlorophyll 
A-B binding proteins PF|00504 domain
Length=267

 Score = 34.3 bits (77),  Expect = 0.13
 Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 6/26 (23%)
 Frame = +3

Query  288  WIPGVRGGGNFINPEWLDGSLPGDYG  365
            W PG         PEWLDGSLPGD+G
Sbjct  68   WFPGSSP------PEWLDGSLPGDFG  87


>gi|15221956|ref|NP_173349.1|  LHCA2*1; chlorophyll binding [Arabidopsis thaliana]
 gi|21554357|gb|AAM63464.1|  PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis 
thaliana]
 gi|56381917|gb|AAV85677.1|  At1g19150 [Arabidopsis thaliana]
 gi|58331805|gb|AAW70400.1|  At1g19150 [Arabidopsis thaliana]
Length=270

 Score = 34.3 bits (77),  Expect = 0.13
 Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 6/26 (23%)
 Frame = +3

Query  288  WIPGVRGGGNFINPEWLDGSLPGDYG  365
            W PG         PEWLDGSLPGD+G
Sbjct  68   WFPGSSP------PEWLDGSLPGDFG  87


>gi|115473127|ref|NP_001060162.1|  Os07g0592300 [Oryza sativa (japonica cultivar-group)]
 gi|33146509|dbj|BAC79626.1|  putative ABI3-interacting protein 2; CnAIP2 [Oryza sativa (japonica 
cultivar-group)]
 gi|113611698|dbj|BAF22076.1|  Os07g0592300 [Oryza sativa (japonica cultivar-group)]
Length=608

 Score = 34.3 bits (77),  Expect = 0.13
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 0/40 (0%)
 Frame = -2

Query  358  SPGRDPSSHSGLMKLPPPLTPGIQDFLGAAAVYNYQLPSS  239
            S GR PS  +G  + PPP  P   D  G A  Y+Y  PS+
Sbjct  488  SAGRRPSGPAGTWQRPPPPMPSYPDRYGHADRYHYTAPSA  527


>gi|60391855|sp|Q93WD2|CB29_CHLRE  Chlorophyll a-b binding protein CP29
 gi|15430560|dbj|BAB64415.1|  light-harvesting chlorophyll-a/b binding protein Lhcb4 [Chlamydomonas 
reinhardtii]
 gi|15430568|dbj|BAB64419.1|  light-harvesting chlorophyll-a/b binding protein Lhcb4 [Chlamydomonas 
reinhardtii]
 gi|27542567|gb|AAO16494.1|  CP29-like protein [Chlamydomonas reinhardtii]
Length=280

 Score = 33.9 bits (76),  Expect = 0.18
 Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 6/26 (23%)
 Frame = +3

Query  288  WIPGVRGGGNFINPEWLDGSLPGDYG  365
            W+P      N   PEWLDGSLPGD G
Sbjct  53   WLP------NTTRPEWLDGSLPGDRG  72


>gi|110377766|gb|ABG73415.1|  chloroplast pigment-binding protein CP29 [Nicotiana tabacum]
Length=285

 Score = 33.1 bits (74),  Expect = 0.30
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 16/42 (38%)
 Frame = +3

Query  270  AAPKKS----------WIPGVRGGGNFINPEWLDGSLPGDYG  365
            AAPKK+          W PG +       PE+LDGSL GDYG
Sbjct  35   AAPKKAPKRQIPDRPLWYPGAKA------PEYLDGSLVGDYG  70


>gi|100801744|emb|CAK24966.1|  chlorophyll a/b binding protein [Solanum tuberosum]
Length=251

 Score = 33.1 bits (74),  Expect = 0.30
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 6/31 (19%)
 Frame = +3

Query  273  APKKSWIPGVRGGGNFINPEWLDGSLPGDYG  365
            A K  W+PG+       +P++LDGSLPGD G
Sbjct  51   AKKGQWLPGLA------SPDYLDGSLPGDNG  75


>gi|261987|gb|AAB24553.1|  photosystem I light-harvesting complex chlorophyll a/b protein, 
p15.1 {N-terminal} [Chlamydomonas reinhardtii, Peptide Partial, 
37 aa]
Length=37

 Score = 33.1 bits (74),  Expect = 0.30
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 6/32 (18%)
 Frame = +3

Query  270  AAPKKSWIPGVRGGGNFINPEWLDGSLPGDYG  365
            AA +K W PGV      + PE+L G L GDYG
Sbjct  1    AADRKLWAPGV------VAPEYLKGDLAGDYG  26


>gi|30680697|ref|NP_850545.1|  LHCB4.2; chlorophyll binding [Arabidopsis thaliana]
Length=227

 Score = 33.1 bits (74),  Expect = 0.30
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 15/41 (36%)
 Frame = +3

Query  270  AAPKKS---------WIPGVRGGGNFINPEWLDGSLPGDYG  365
            A+PKK+         W PG +      +PE+LDGSL GDYG
Sbjct  40   ASPKKAKTVISDRPLWFPGAK------SPEYLDGSLVGDYG  74


>gi|15231990|ref|NP_187506.1|  LHCB4.2 [Arabidopsis thaliana]
 gi|38503262|sp|Q9XF88|CB4B_ARATH  Chlorophyll a-b binding protein CP29.2, chloroplast precursor 
(LHCII protein 4.2) (LHCB4.2)
 gi|4741954|gb|AAD28774.1|AF134127_1  Lhcb4.2 protein [Arabidopsis thaliana]
 gi|6403491|gb|AAF07831.1|AC010871_7  putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
 gi|17473745|gb|AAL38316.1|  putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
 gi|20148559|gb|AAM10170.1|  putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length=287

 Score = 33.1 bits (74),  Expect = 0.30
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 15/41 (36%)
 Frame = +3

Query  270  AAPKKS---------WIPGVRGGGNFINPEWLDGSLPGDYG  365
            A+PKK+         W PG +      +PE+LDGSL GDYG
Sbjct  40   ASPKKAKTVISDRPLWFPGAK------SPEYLDGSLVGDYG  74


>gi|602359|emb|CAA57492.1|  Type II chlorophyll a/b binding protein from photosystem I [Pisum 
sativum]
Length=269

 Score = 33.1 bits (74),  Expect = 0.30
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 7/35 (20%)
 Frame = +3

Query  264  TAAAPKKS-WIPGVRGGGNFINPEWLDGSLPGDYG  365
            T A P +  W PG         P WLDGSLPGD+G
Sbjct  58   TVAEPDRPLWFPGSTP------PPWLDGSLPGDFG  86


>gi|115765|sp|P10708|CB12_LYCES  Chlorophyll a-b binding protein 7, chloroplast precursor (LHCI 
type II CAB-7)
 gi|19180|emb|CAA32197.1|  chlorophyll a/b-binding protein [Solanum lycopersicum]
 gi|170431|gb|AAA34159.1|  chlorophyll a/b-binding protein
 gi|226546|prf||1601518A  chlorophyll a/b binding protein II
Length=270

 Score = 32.3 bits (72),  Expect = 0.51
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
 Frame = +3

Query  267  AAAPKKS-WIPGVRGGGNFINPEWLDGSLPGDYG  365
            AA P +  W PG         P WLDGSLPGD+G
Sbjct  60   AADPDRPLWFPGSTP------PPWLDGSLPGDFG  87


>gi|21593722|gb|AAM65689.1|  light-harvesting complex protein [Arabidopsis thaliana]
Length=256

 Score = 32.0 bits (71),  Expect = 0.67
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
 Frame = +3

Query  264  TAAAPKKSWIPGVRGGGNFINPEWLDGSLPGDYG  365
            T A  + +W+PG+        P +LDG+L GDYG
Sbjct  41   TVAVERATWLPGLNP------PPYLDGNLAGDYG  68


>gi|4741942|gb|AAD28768.1|AF134121_1  Lhca5 protein [Arabidopsis thaliana]
Length=256

 Score = 32.0 bits (71),  Expect = 0.67
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
 Frame = +3

Query  264  TAAAPKKSWIPGVRGGGNFINPEWLDGSLPGDYG  365
            T A  + +W+PG+        P +LDG+L GDYG
Sbjct  41   TVAVERATWLPGLNP------PPYLDGNLAGDYG  68


>gi|63029289|gb|AAY27543.1|  chloroplast chlorophyll a/b-binding protein CP29 precursor Lhcb4 
[Ostreococcus tauri]
 gi|116055585|emb|CAL58253.1|  CP29-like light-harvesting chlorophyll a/b binding protein chlor 
(IC) [Ostreococcus tauri]
Length=257

 Score = 32.0 bits (71),  Expect = 0.67
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 6/26 (23%)
 Frame = +3

Query  288  WIPGVRGGGNFINPEWLDGSLPGDYG  365
            W PG       + P WLDGSLPGD G
Sbjct  43   WRPGA------VRPAWLDGSLPGDRG  62


>gi|115479363|ref|NP_001063275.1|  Os09g0439500 [Oryza sativa (japonica cultivar-group)]
 gi|51091350|dbj|BAD36085.1|  putative chlorophyll a/b-binding protein type II [Oryza sativa 
(japonica cultivar-group)]
 gi|51091400|dbj|BAD36143.1|  putative chlorophyll a/b-binding protein type II [Oryza sativa 
(japonica cultivar-group)]
 gi|113631508|dbj|BAF25189.1|  Os09g0439500 [Oryza sativa (japonica cultivar-group)]
Length=264

 Score = 32.0 bits (71),  Expect = 0.67
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 6/26 (23%)
 Frame = +3

Query  288  WIPGVRGGGNFINPEWLDGSLPGDYG  365
            W PG         P WLDGSLPGD+G
Sbjct  62   WFPGSSP------PPWLDGSLPGDFG  81


>gi|15220077|ref|NP_175137.1|  LHCA5 [Arabidopsis thaliana]
 gi|30693978|ref|NP_849778.1|  LHCA5 [Arabidopsis thaliana]
 gi|12321000|gb|AAG50618.1|AC083835_3  light-harvesting complex protein [Arabidopsis thaliana]
 gi|17063199|gb|AAL32974.1|  At1g45474/F2G19.4 [Arabidopsis thaliana]
 gi|19699116|gb|AAL90924.1|  At1g45474/F2G19.4 [Arabidopsis thaliana]
 gi|62320735|dbj|BAD95402.1|  light-harvesting complex protein [Arabidopsis thaliana]
Length=256

 Score = 32.0 bits (71),  Expect = 0.67
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
 Frame = +3

Query  264  TAAAPKKSWIPGVRGGGNFINPEWLDGSLPGDYG  365
            T A  + +W+PG+        P +LDG+L GDYG
Sbjct  41   TVAVERATWLPGLNP------PPYLDGNLAGDYG  68


>gi|18539429|gb|AAL74385.1|AF359117_1  LHC I type II chlorophyll binding protein [Pinus sylvestris]
 gi|18539431|gb|AAL74386.1|AF359118_1  LHC I type II chlorophyll binding protein [Pinus sylvestris]
Length=137

 Score = 31.6 bits (70),  Expect = 0.87
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 6/26 (23%)
 Frame = +3

Query  288  WIPGVRGGGNFINPEWLDGSLPGDYG  365
            W PG         P WLDGSLPGD+G
Sbjct  23   WFPGNTP------PPWLDGSLPGDFG  42


>gi|20279462|gb|AAM18742.1|AC092548_20  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=250

 Score = 31.6 bits (70),  Expect = 0.87
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query  313  PPPLTPGIQDFLGAAAVYNYQLPSSRSRGCHSST-QQGLAPLSSTKKWRPQPVYH  152
            PPPL PG +  LG       +L SSR+   H +  + G A     + WR +P  H
Sbjct  95   PPPLKPGGRRRLGCPVTRCRRLRSSRAASAHEARGEAGCARRVGLEGWRGRPRAH  149


>gi|20792|emb|CAA41406.1|  Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length=278

 Score = 31.6 bits (70),  Expect = 0.87
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 6/26 (23%)
 Frame = +3

Query  288  WIPGVRGGGNFINPEWLDGSLPGDYG  365
            W PG         P WLDGSLPGD+G
Sbjct  76   WFPGNTP------PPWLDGSLPGDFG  95


>gi|575349|emb|CAA57877.1|  light-harvesting chlorophyll a /b binding protein [Nicotiana 
tabacum]
Length=200

 Score = 31.2 bits (69),  Expect = 1.1
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 6/29 (20%)
 Frame = +3

Query  279  KKSWIPGVRGGGNFINPEWLDGSLPGDYG  365
            K  W+PG+       +P +LDGSLPGD G
Sbjct  2    KGQWLPGLA------SPTYLDGSLPGDXG  24


>gi|544702|gb|AAB29486.1|  light-harvesting complex I; LHC I [Hordeum vulgare]
Length=231

 Score = 30.8 bits (68),  Expect = 1.5
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
 Frame = +3

Query  267  AAAPKKSWIPGVRGGGNFINPEWLDGSLPGDYG  365
            A   K SW+PG++      +P +LDGSL GD G
Sbjct  29   AVQAKGSWLPGLQ------SPAYLDGSLEGDNG  55