Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168944168-1628-3865483358.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig209 Length=303
Score E Sequences producing significant alignments: (Bits) Value gi|15228912|ref|NP_188935.1| ATARFC1; GTP binding [Arabidopsi... 165 5e-41 gi|115486053|ref|NP_001068170.1| Os11g0586900 [Oryza sativa (... 150 1e-36 gi|29028256|gb|AAO62347.1| ARF1-like GTP-binding protein [Gossyp 99.0 4e-21 gi|116060895|emb|CAL57373.1| unnamed protein product [Ostreococc 98.6 6e-21 gi|89475524|gb|ABD73294.1| ADP-ribosylation factor-like protein 98.6 6e-21 gi|20161472|dbj|BAB90396.1| ADP-ribosylation factor [Oryza sa... 98.6 6e-21 gi|115440639|ref|NP_001044599.1| Os01g0813400 [Oryza sativa (... 98.6 6e-21 gi|115464585|ref|NP_001055892.1| Os05g0489600 [Oryza sativa (... 98.6 6e-21 gi|1703374|sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1 >gi... 98.6 6e-21 gi|115501471|dbj|BAF34209.1| ADP ribosylation factor [Nicotiana 98.2 8e-21 gi|108711707|gb|ABF99502.1| ADP-ribosylation factor, putative... 98.2 8e-21 gi|92885316|gb|ABE87751.1| Ras GTPase; ARF/SAR superfamily [Medi 98.2 8e-21 gi|52548250|gb|AAU82112.1| ADP-ribosylation factor [Triticum aes 98.2 8e-21 gi|47026845|gb|AAT08648.1| ADP-ribosylation factor [Hyacinthus o 98.2 8e-21 gi|47026876|gb|AAT08663.1| ADP-ribosylation factor [Hyacinthus o 98.2 8e-21 gi|39653273|gb|AAR29293.1| ADP-ribosylation factor [Medicago ... 98.2 8e-21 gi|38353642|gb|AAR18698.1| ADP-ribosylation factor 1 [Populus to 98.2 8e-21 gi|115456151|ref|NP_001051676.1| Os03g0811900 [Oryza sativa (... 98.2 8e-21 gi|30681825|ref|NP_172533.2| GTP binding [Arabidopsis thalian... 98.2 8e-21 gi|115435820|ref|NP_001042668.1| Os01g0265100 [Oryza sativa (... 98.2 8e-21 gi|15228723|ref|NP_191788.1| GTP binding [Arabidopsis thalian... 98.2 8e-21 gi|15241463|ref|NP_196971.1| ATARFA1B; GTP binding [Arabidops... 98.2 8e-21 gi|4324967|gb|AAD17207.1| ADP-ribosylation factor [Glycine max] 98.2 8e-21 gi|8778579|gb|AAF79587.1|AC007945_7 F28C11.12 [Arabidopsis thali 98.2 8e-21 gi|6573751|gb|AAF17671.1|AC009398_20 F20B24.7 [Arabidopsis thali 98.2 8e-21 gi|7643794|gb|AAF65512.1| ADP-ribosylation factor [Capsicum a... 98.2 8e-21 gi|77999251|gb|ABB16972.1| ADP-ribosylation factor 1-like pro... 98.2 8e-21 gi|77812440|gb|ABB03801.1| ADP ribosylation factor 002 [Daucu... 98.2 8e-21 gi|76160966|gb|ABA40446.1| unknown [Solanum tuberosum] 98.2 8e-21 gi|76160984|gb|ABA40455.1| ARF-like small GTPase-like protein... 98.2 8e-21 gi|1703375|sp|P51822|ARF1_DAUCA ADP-ribosylation factor 1 >gi... 98.2 8e-21 gi|115471217|ref|NP_001059207.1| Os07g0223400 [Oryza sativa (... 98.2 8e-21 gi|15223164|ref|NP_177206.1| unknown protein [Arabidopsis tha... 98.2 8e-21 gi|1351974|sp|P49076|ARF_MAIZE ADP-ribosylation factor >gi|55... 98.2 8e-21 gi|25294174|pir||E86368 F5O8.5 protein - Arabidopsis thaliana... 98.2 8e-21 gi|15226521|ref|NP_182239.1| ARF1 (ADP-RIBOSYLATION FACTOR 1)... 98.2 8e-21 gi|17154685|emb|CAD12855.1| ADP-ribosylation factor [Gossypiu... 98.2 8e-21 gi|11131026|sp|O48920|ARF_VIGUN ADP-ribosylation factor >gi|2... 98.2 8e-21 gi|11131023|sp|O48649|ARF1_SALBA ADP-ribosylation factor 1 >g... 97.4 1e-20 gi|1703376|sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1 >gi... 97.1 2e-20 gi|29124979|gb|AAO63779.1| ADP-ribosylation factor 1 [Populus tr 95.9 4e-20 gi|82621126|gb|ABB86251.1| ADP-ribosylation factor 1-like [Solan 95.1 6e-20 gi|37932258|gb|AAP69821.1| ARF [Oryza sativa (japonica cultivar- 92.8 3e-19 gi|3182922|sp|Q96361|ARF1_BRARP ADP-ribosylation factor 1 >gi... 92.8 3e-19 gi|3182919|sp|O23778|ARF1_CATRO ADP-ribosylation factor 1 >gi... 92.0 5e-19 gi|92893756|gb|ABE91892.1| Ras GTPase [Medicago truncatula] 91.7 7e-19 gi|92875403|gb|ABE83396.1| Guanine nucleotide binding protein... 91.7 7e-19 gi|30682545|ref|NP_850057.1| GTP binding / guanyl nucleotide ... 91.7 7e-19 gi|7248402|dbj|BAA92725.1| putative ADP-ribosylation factor [... 91.3 9e-19 gi|92890621|gb|ABE90431.1| Ras GTPase [Medicago truncatula] 90.5 2e-18 gi|15237901|ref|NP_197208.1| GTP binding [Arabidopsis thalian... 90.5 2e-18 gi|82621154|gb|ABB86265.1| ADP-ribosylation factor-like [Solanum 89.7 3e-18 gi|115475543|ref|NP_001061368.1| Os08g0248900 [Oryza sativa (... 89.7 3e-18 gi|15226086|ref|NP_179133.1| ATARFB1A; GTP binding [Arabidops... 89.7 3e-18 gi|47026953|gb|AAT08696.1| ADP-ribosylation factor [Hyacinthus o 89.4 4e-18 gi|110289664|gb|AAP55187.2| ADP-ribosylation factor, putative... 89.4 4e-18 gi|78709066|gb|ABB48041.1| ADP-ribosylation factor, putative,... 89.4 4e-18 gi|115483682|ref|NP_001065511.1| Os10g0580200 [Oryza sativa (... 89.4 4e-18 gi|15228464|ref|NP_186962.1| ATARFB1C; GTP binding [Arabidops... 89.4 4e-18 gi|41052966|dbj|BAD07876.1| putative ADP-ribosylation factor ... 89.4 4e-18 gi|58220034|gb|AAW67545.1| ADP-ribosylation factor [Daucus carot 88.6 6e-18 gi|116055791|emb|CAL57876.1| GTP-binding ADP-ribosylation fac... 88.2 8e-18 gi|115443985|ref|NP_001045772.1| Os02g0128600 [Oryza sativa (... 87.4 1e-17 gi|89257442|gb|ABD64934.1| ADP-ribosylation factor, putative [Br 82.0 6e-16 gi|92890620|gb|ABE90430.1| Ras GTPase [Medicago truncatula] 76.6 2e-14 gi|115448099|ref|NP_001047829.1| Os02g0699300 [Oryza sativa (... 75.5 5e-14 gi|1184987|gb|AAA87885.1| NTGB1 [Nicotiana tabacum] 71.6 8e-13 gi|115448495|ref|NP_001048027.1| Os02g0732500 [Oryza sativa (... 69.7 3e-12 gi|18421676|ref|NP_568553.1| ATARLA1A; GTP binding [Arabidops... 67.8 1e-11 gi|9757978|dbj|BAB08314.1| ADP-ribosylation factor-like protein 67.8 1e-11 gi|115473403|ref|NP_001060300.1| Os07g0620400 [Oryza sativa (... 66.6 2e-11 gi|2961178|gb|AAC05675.1| GTP-binding protein [Oryza sativa] 65.9 4e-11 gi|115451383|ref|NP_001049292.1| Os03g0200800 [Oryza sativa (... 65.5 5e-11 gi|115453365|ref|NP_001050283.1| Os03g0392300 [Oryza sativa (... 63.5 2e-10 gi|15224165|ref|NP_179430.1| TTN5 (TITAN 5); GTP binding [Ara... 63.2 3e-10 gi|22331720|ref|NP_190556.2| ATARLA1C; GTP binding [Arabidops... 62.8 4e-10 gi|21553780|gb|AAM62873.1| GTP-binding protein-like [Arabidopsis 61.6 8e-10 gi|15242939|ref|NP_200034.1| ATGB1 [Arabidopsis thaliana] >gi... 61.6 8e-10 gi|15229626|ref|NP_190555.1| ATARLA1B; GTP binding [Arabidops... 61.2 1e-09 gi|18425204|ref|NP_569051.1| ATARLA1D; GTP binding [Arabidops... 60.8 1e-09 gi|9757877|dbj|BAB08464.1| ADP-ribosylation factor-like protein 60.8 1e-09 gi|84796043|gb|ABC66109.1| putative ADP ribosylation factor 1 [Z 60.5 2e-09 gi|115445861|ref|NP_001046710.1| Os02g0327100 [Oryza sativa (... 60.1 2e-09 gi|116057640|emb|CAL53843.1| GTP-binding ADP-ribosylation fac... 58.2 9e-09 gi|6723432|emb|CAB66925.1| ADP-RIBOSYLATION FACTOR-like protein 58.2 9e-09 gi|78191446|gb|ABB29944.1| GTPase-like [Solanum tuberosum] 55.1 7e-08 gi|77999253|gb|ABB16973.1| GTPase-like protein [Solanum tuberosu 55.1 7e-08 gi|1710851|sp|P52884|SAR2_LYCES GTP-binding protein SAR2 >gi|473 55.1 7e-08 gi|116054948|emb|CAL57025.1| Vesicle coat complex COPII, GTPa... 54.3 1e-07 gi|47499876|gb|AAT28676.1| small GTP-binding protein [Oryza s... 54.3 1e-07 gi|115467188|ref|NP_001057193.1| Os06g0225000 [Oryza sativa (... 54.3 1e-07 gi|116058638|emb|CAL54345.1| GTP-binding protein SEC4, small ... 53.9 2e-07 gi|303748|dbj|BAA02115.1| GTP-binding protein [Pisum sativum]... 53.5 2e-07 gi|78522573|gb|ABB46196.1| YptC1 [Chlamydomonas incerta] 53.1 3e-07 gi|115437604|ref|NP_001043336.1| Os01g0558600 [Oryza sativa (... 53.1 3e-07 gi|1370166|emb|CAA98160.1| RAB1C [Lotus japonicus] 53.1 3e-07 gi|311907|emb|CAA51011.1| ras-related GTP-binding protein [Nicot 53.1 3e-07 gi|1616614|emb|CAA69701.1| small GTP-binding protein [Nicotiana 53.1 3e-07 gi|1053063|gb|AAA80678.1| small GTP-binding protein 53.1 3e-07 gi|303750|dbj|BAA02116.1| GTP-binding protein [Pisum sativum]... 53.1 3e-07
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 176 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 303 Length of database: 101054579 Length adjustment: 70 Effective length of query: 233 Effective length of database: 81220149 Effective search space: 2517824619 Effective search space used: 2517824619 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)