Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168941862-23553-172368771685.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig228 Length=482
Score E Sequences producing significant alignments: (Bits) Value gi|83284001|gb|ABC01908.1| putative 24 kDa seed maturation pr... 90.1 3e-18 gi|115465005|ref|NP_001056102.1| Os05g0526400 [Oryza sativa (... 87.0 3e-17 gi|115435410|ref|NP_001042463.1| Os01g0226300 [Oryza sativa (... 86.7 4e-17 gi|13027362|dbj|BAB32723.1| unknown protein [Oryza sativa (ja... 86.7 4e-17 gi|15236556|ref|NP_194094.1| unknown protein [Arabidopsis tha... 85.5 8e-17 gi|115439795|ref|NP_001044177.1| Os01g0736900 [Oryza sativa (... 83.2 4e-16 gi|15237093|ref|NP_192861.1| unknown protein [Arabidopsis tha... 82.0 9e-16 gi|18406991|ref|NP_566065.1| unknown protein [Arabidopsis tha... 81.3 2e-15 gi|115445443|ref|NP_001046501.1| Os02g0265900 [Oryza sativa (... 78.2 1e-14 gi|42566117|ref|NP_191715.2| unknown protein [Arabidopsis tha... 77.0 3e-14 gi|15234108|ref|NP_192032.1| unknown protein [Arabidopsis tha... 75.9 6e-14 gi|15238125|ref|NP_198975.1| unknown protein [Arabidopsis tha... 73.9 2e-13 gi|79316001|ref|NP_001030913.1| unknown protein [Arabidopsis ... 73.2 4e-13 gi|78714222|gb|ABB51093.1| reticulon [Hordeum vulgare] 71.2 2e-12 gi|115468228|ref|NP_001057713.1| Os06g0503400 [Oryza sativa (... 70.5 3e-12 gi|92874883|gb|ABE83072.1| Reticulon [Medicago truncatula] 69.3 6e-12 gi|15222616|ref|NP_176592.1| unknown protein [Arabidopsis tha... 68.9 8e-12 gi|115463129|ref|NP_001055164.1| Os05g0312500 [Oryza sativa (... 64.7 1e-10 gi|21592845|gb|AAM64795.1| unknown [Arabidopsis thaliana] 60.5 3e-09 gi|18401821|ref|NP_566604.1| unknown protein [Arabidopsis tha... 58.9 8e-09 gi|115455721|ref|NP_001051461.1| Os03g0781700 [Oryza sativa (... 57.8 2e-08 gi|56784958|dbj|BAD82488.1| 24 kDa seed maturation protein-li... 57.4 2e-08 gi|115470537|ref|NP_001058867.1| Os07g0142000 [Oryza sativa (... 52.0 1e-06 gi|18398810|ref|NP_566371.1| unknown protein [Arabidopsis tha... 49.3 6e-06 gi|30681227|ref|NP_850552.1| unknown protein [Arabidopsis thalia 49.3 6e-06 gi|62319159|dbj|BAD94328.1| hypothetical protein [Arabidopsis th 48.5 1e-05 gi|110743729|dbj|BAE99701.1| hypothetical protein [Arabidopsis t 36.6 0.043 gi|79607888|ref|NP_974276.2| unknown protein [Arabidopsis thalia 36.6 0.043 gi|42572359|ref|NP_974275.1| unknown protein [Arabidopsis tha... 36.6 0.043 gi|115434434|ref|NP_001041975.1| Os01g0139000 [Oryza sativa (... 34.3 0.22 gi|115451567|ref|NP_001049384.1| Os03g0216500 [Oryza sativa (... 33.5 0.37 gi|30679374|ref|NP_179130.2| unknown protein [Arabidopsis tha... 33.5 0.37 gi|4662633|gb|AAD26905.1| hypothetical protein [Arabidopsis thal 33.5 0.37 gi|41179058|ref|NP_958415.1| hypothetical protein ChreCp059 [... 31.6 1.4 gi|440399|emb|CAA54257.1| unnamed protein product [Chlamydomonas 31.6 1.4 gi|76262508|gb|ABA41404.1| pherophorin-C6 protein precursor [Chl 30.0 4.1 gi|15223965|ref|NP_177870.1| unknown protein [Arabidopsis tha... 30.0 4.1 gi|26451199|dbj|BAC42703.1| unknown protein [Arabidopsis thalian 30.0 4.1 gi|4699927|gb|AAD28048.1|AC007125_1 putative transposon prote... 28.9 9.0
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 315 Number of extensions: 11 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 482 Length of database: 101054579 Length adjustment: 104 Effective length of query: 378 Effective length of database: 71586283 Effective search space: 4008831848 Effective search space used: 4008831848 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 63 (28.9 bits)