Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168941896-5290-51125188322.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig230 Length=533
Score E Sequences producing significant alignments: (Bits) Value gi|47174868|gb|AAT12424.1| male-specific transcription factor... 150 3e-36 gi|30686115|ref|NP_850618.1| ZML1 (ZIM-LIKE 1); transcription... 145 6e-35 gi|21537322|gb|AAM61663.1| flowering protein CONSTANS, putative 140 2e-33 gi|18402914|ref|NP_566676.1| ZML1 (ZIM-LIKE 1); transcription... 140 2e-33 gi|18403600|ref|NP_564593.1| ZML2 (ZIM-LIKE 2); transcription... 139 5e-33 gi|15028099|gb|AAK76580.1| putative flowering protein CONSTANS [ 137 3e-32 gi|115469738|ref|NP_001058468.1| Os06g0698900 [Oryza sativa (... 133 3e-31 gi|12321671|gb|AAG50873.1|AC025294_11 hypothetical protein [A... 133 3e-31 gi|53791868|dbj|BAD53990.1| putative zinc-finger protein [Ory... 133 3e-31 gi|115444225|ref|NP_001045892.1| Os02g0148500 [Oryza sativa (... 130 4e-30 gi|108710446|gb|ABF98241.1| GATA transcription factor 27, put... 118 1e-26 gi|115454631|ref|NP_001050916.1| Os03g0684000 [Oryza sativa (... 118 1e-26 gi|8918531|dbj|BAA97678.1| ZIM [Arabidopsis thaliana] 115 7e-26 gi|15233844|ref|NP_194178.1| ZIM; transcription factor [Arabi... 115 7e-26 gi|115455165|ref|NP_001051183.1| Os03g0734900 [Oryza sativa (... 102 6e-22 gi|110738549|dbj|BAF01200.1| hypothetical protein [Arabidopsis t 97.1 3e-20 gi|108710935|gb|ABF98730.1| CCT motif family protein, express... 90.9 2e-18 gi|50582726|gb|AAT78796.1| putative zinc finger protein [Oryz... 73.2 5e-13 gi|77551602|gb|ABA94399.1| Ubiquitin carboxyl-terminal hydrol... 72.0 1e-12 gi|28193631|gb|AAO27295.1| timing of CAB expression 1-like pr... 55.8 9e-08 gi|61611704|gb|AAX47178.1| TIMING OF CAB 1 [Pisum sativum] 55.5 1e-07 gi|92879353|gb|ABE85490.1| Response regulator receiver; CCT [Med 55.1 1e-07 gi|7413556|emb|CAB86035.1| putative protein [Arabidopsis thalian 53.5 4e-07 gi|34499879|gb|AAQ73525.1| timing of CAB expression 1 [Mesembrya 53.5 4e-07 gi|18414032|ref|NP_568107.1| APRR7 (PSEUDO-RESPONSE REGULATOR... 53.5 4e-07 gi|51980216|gb|AAU20772.1| timing of CAB expression 1 protein [C 53.1 6e-07 gi|51571875|dbj|BAD38854.1| pseudo-response regulator 1 [Oryz... 53.1 6e-07 gi|115447337|ref|NP_001047448.1| Os02g0618200 [Oryza sativa (... 53.1 6e-07 gi|116010474|emb|CAL29796.1| CONSTANS-like1 protein [Brassica... 52.8 7e-07 gi|115484281|ref|NP_001065802.1| Os11g0157600 [Oryza sativa (... 52.8 7e-07 gi|108864017|gb|ABG22374.1| CCT motif family protein, express... 52.8 7e-07 gi|20466420|gb|AAM20527.1| unknown protein [Arabidopsis thali... 52.8 7e-07 gi|77548762|gb|ABA91559.1| CCT motif family protein, expresse... 52.8 7e-07 gi|42569980|ref|NP_182190.2| unknown protein [Arabidopsis thalia 52.8 7e-07 gi|42571259|ref|NP_973703.1| APRR9 (PSEUDO-RESPONSE REGULATOR 9) 52.8 7e-07 gi|84570631|dbj|BAE72700.1| pseudo-response regulator 37 homolog 52.8 7e-07 gi|51968564|dbj|BAD42974.1| hypothetical protein [Arabidopsis... 52.8 7e-07 gi|115480333|ref|NP_001063760.1| Os09g0532400 [Oryza sativa (... 52.8 7e-07 gi|18407171|ref|NP_566085.1| APRR9 (PSEUDO-RESPONSE REGULATOR... 52.8 7e-07 gi|84570633|dbj|BAE72701.1| pseudo-response regulator 59 homolog 52.4 1e-06 gi|84570625|dbj|BAE72697.1| pseudo-response regulator 37 homolog 52.0 1e-06 gi|22854966|gb|AAN09838.1| COL1 protein [Brassica nigra] 51.6 2e-06 gi|12324881|gb|AAG52391.1|AC011915_5 putative B-box zinc fing... 51.2 2e-06 gi|18409053|ref|NP_564932.1| transcription factor/ zinc ion b... 51.2 2e-06 gi|21536669|gb|AAM61001.1| putative B-box zinc finger protein [A 50.8 3e-06 gi|84570635|dbj|BAE72702.1| pseudo-response regulator 95 homolog 50.8 3e-06 gi|84570629|dbj|BAE72699.1| pseudo-response regulator 95 homolog 50.8 3e-06 gi|18420797|ref|NP_568446.1| APRR5 (PSEUDO-RESPONSE REGULATOR... 50.8 3e-06 gi|52783225|sp|Q6LA42|APRR5_ARATH Two-component response regu... 50.8 3e-06 gi|87240854|gb|ABD32712.1| Response regulator receiver; CCT [Med 50.4 4e-06 gi|67005935|gb|AAY62604.1| pseudo response regulator 3 [Arabidop 50.1 5e-06 gi|67005937|gb|AAY62605.1| pseudo response regulator 3 [Arabidop 50.1 5e-06 gi|22854946|gb|AAN09828.1| COL1 protein [Brassica nigra] 50.1 5e-06 gi|22854942|gb|AAN09826.1| COL1 protein [Brassica nigra] 50.1 5e-06 gi|22854920|gb|AAN09815.1| COL1 protein [Brassica nigra] >gi|... 50.1 5e-06 gi|22854934|gb|AAN09822.1| COL1 protein [Brassica nigra] 50.1 5e-06 gi|22854930|gb|AAN09820.1| COL1 protein [Brassica nigra] >gi|... 50.1 5e-06 gi|22854972|gb|AAN09841.1| COL1 protein [Brassica nigra] 50.1 5e-06 gi|22854952|gb|AAN09831.1| COL1 protein [Brassica nigra] 50.1 5e-06 gi|22854924|gb|AAN09817.1| COL1 protein [Brassica nigra] 50.1 5e-06 gi|22854928|gb|AAN09819.1| COL1 protein [Brassica nigra] 50.1 5e-06 gi|22854950|gb|AAN09830.1| COL1 protein [Brassica nigra] 50.1 5e-06 gi|22854982|gb|AAN09846.1| COL1 protein [Brassica nigra] 50.1 5e-06 gi|22854986|gb|AAN09848.1| COL1 protein [Brassica nigra] 50.1 5e-06 gi|11037311|gb|AAG27547.1| constans-like protein [Brassica ni... 50.1 5e-06 gi|18424319|ref|NP_568919.1| APRR3 (PSEUDO-RESPONSE REGULATOR... 50.1 5e-06 gi|22854940|gb|AAN09825.1| COL1 protein [Brassica nigra] 49.7 6e-06 gi|84570627|dbj|BAE72698.1| pseudo-response regulator 59 homolog 49.7 6e-06 gi|106636023|gb|ABF82229.1| constans-like 1 protein [Brassica ju 48.9 1e-05 gi|65329050|gb|AAY42109.1| pseudo-response regulator PPD-H1 [... 48.9 1e-05 gi|65329125|gb|AAY42113.1| pseudo-response regulator PPD-H1 [... 48.9 1e-05 gi|30984027|gb|AAP42647.1| constans-like protein [Brassica napus 48.9 1e-05 gi|15242403|ref|NP_197089.1| COL1 (CONSTANS-LIKE 1); transcri... 48.9 1e-05 gi|22854910|gb|AAN09810.1| COL1 protein [Brassica nigra] 48.5 1e-05 gi|22854916|gb|AAN09813.1| COL1 protein [Brassica nigra] 48.5 1e-05 gi|22854906|gb|AAN09808.1| COL1 protein [Brassica nigra] >gi|... 48.5 1e-05 gi|15240235|ref|NP_200946.1| TOC1 (TIMING OF CAB1 1); transcr... 48.5 1e-05 gi|25453510|pir||T52076 ABI3-interacting protein aip1 [import... 48.5 1e-05 gi|22854908|gb|AAN09809.1| COL1 protein [Brassica nigra] 48.1 2e-05 gi|60547735|gb|AAX23831.1| hypothetical protein At2g33350 [Arabi 48.1 2e-05 gi|116061129|emb|CAL56517.1| GATA-4/5/6 transcription factors (I 47.8 2e-05 gi|21667485|gb|AAM74069.1|AF490474_1 CONSTANS-like protein [H... 47.8 2e-05 gi|51948340|gb|AAU14274.1| APRR-like protein [Ostreococcus tauri 47.8 2e-05 gi|51571877|dbj|BAD38855.1| pseudo-response regulator 37 [Ory... 47.8 2e-05 gi|115469296|ref|NP_001058247.1| Os06g0654900 [Oryza sativa (... 47.0 4e-05 gi|115473951|ref|NP_001060574.1| Os07g0667300 [Oryza sativa (... 46.6 5e-05 gi|79567612|ref|NP_180893.2| unknown protein [Arabidopsis tha... 46.6 5e-05 gi|2459418|gb|AAB80653.1| hypothetical protein [Arabidopsis thal 46.6 5e-05 gi|24796813|gb|AAN64489.1| putative pseudo-response regulator... 46.6 5e-05 gi|115452319|ref|NP_001049760.1| Os03g0284100 [Oryza sativa (... 46.6 5e-05 gi|51571885|dbj|BAD38859.1| pseudo-response regulator 73 [Ory... 46.6 5e-05 gi|115467468|ref|NP_001057333.1| Os06g0264200 [Oryza sativa (... 46.2 7e-05 gi|108710715|gb|ABF98510.1| CCT motif family protein, express... 46.2 7e-05 gi|115454905|ref|NP_001051053.1| Os03g0711100 [Oryza sativa (... 46.2 7e-05 gi|79319580|ref|NP_001031160.1| zinc ion binding [Arabidopsis th 46.2 7e-05 gi|30694486|ref|NP_175339.2| transcription factor/ zinc ion bind 46.2 7e-05 gi|53793155|dbj|BAD54363.1| zinc finger protein-like [Oryza s... 46.2 7e-05 gi|46390476|dbj|BAD15937.1| zinc finger protein-like [Oryza s... 46.2 7e-05 gi|115448485|ref|NP_001048022.1| Os02g0731700 [Oryza sativa (... 46.2 7e-05 gi|17433068|sp|Q9M9B3|COL8_ARATH Putative zinc finger protein... 46.2 7e-05
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 417 Number of extensions: 1 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 533 Length of database: 101054579 Length adjustment: 106 Effective length of query: 427 Effective length of database: 71019585 Effective search space: 5042390535 Effective search space used: 5042390535 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)