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BLASTX 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168942836-24572-153013041200.BLASTQ1


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig240
Length=510


Distribution of 5 Blast Hits on the Query Sequence



                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|116058291|emb|CAL53480.1|  unnamed protein product [Ostreococc  32.7    0.72 
gi|70568819|dbj|BAE06271.1|  cyclin A [Scutellaria baicalensis]    30.8    2.8  
gi|76262492|gb|ABA41396.1|  pherophorin-V2 protein precursor [...  30.4    3.6  
gi|108796878|ref|YP_636177.1|  beta'' subunit of RNA polymeras...  29.6    6.1   Gene info
gi|115438817|ref|NP_001043688.1|  Os01g0642000 [Oryza sativa (...  29.3    8.0   Gene info
Alignments
>gi|116058291|emb|CAL53480.1| unnamed protein product [Ostreococcus tauri] Length=306 Score = 32.7 bits (73), Expect = 0.72 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 4/92 (4%) Frame = +2 Query 47 EDGLMVQITPETMDGLRLALREQKDFKITCGKVDAVDLREYVDICWVDSEEKGNKGVISS 226 E G V +TPE + L AL + K+ +VDA +L+ + +EE + Sbjct 176 ERGADVMVTPEMCEFLSTALTSVRTVKVEAREVDASELK----VPEPKTEEMQTSESSTR 231 Query 227 VDGISLQGFPSEKIKLEADFETDEKTVKCTEV 322 +D I GF + K A ++ + V EV Sbjct 232 LDAIGSAGFRMSRSKFMAHVDSGDVKVNWKEV 263 >gi|70568819|dbj|BAE06271.1| cyclin A [Scutellaria baicalensis] Length=496 Score = 30.8 bits (68), Expect = 2.8 Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 13/110 (11%) Frame = +2 Query 17 SGFLAKSSIVEDGLM-------VQITPETMDGLRLALREQKDFKITCGKVDAVDLR--EY 169 S F+ KS +V + + ++P+ D L +++ E TC + + D+ +Y Sbjct 112 STFIPKSDVVLPKTLAAPVSCSMDVSPDKSDSLSVSMDESMS---TCDSLKSPDVEHVDY 168 Query 170 VDICWVDSEEKGNKGVISSVDGISLQGFPSEKIKLEADFETDEKTVKCTE 319 +D+ VDS E+ ++ D + + G ++ L A E+ +K V E Sbjct 169 IDVAAVDSIERKASNMLCISDHMEIAGNLCKRDAL-ASLESGDKIVDVDE 217 >gi|76262492|gb|ABA41396.1| pherophorin-V2 protein precursor [Volvox carteri f. nagariensis] Length=342 Score = 30.4 bits (67), Expect = 3.6 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Frame = -1 Query 207 FPFSSESTQQISTYSLRSTASTFPHVILKSFCSRRASRKPSMVSGVICT 61 FP+SS QQ + YS+ ST P+ ++C + A P+ +G C+ Sbjct 24 FPYSSVCAQQPAVYSVESTIIERPN---NTYCFKIAVNVPANCAGYCCS 69 >gi|108796878|ref|YP_636177.1| Gene info beta'' subunit of RNA polymerase [Pseudendoclonium akinetum] gi|90111013|sp|Q3ZJ90|RPOC2_PSEAK Gene info DNA-directed RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) gi|56159576|gb|AAV80600.1| Gene info beta'' subunit of RNA polymerase [Pseudendoclonium akinetum] Length=3462 Score = 29.6 bits (65), Expect = 6.1 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Frame = +2 Query 242 LQGFPSEKIKLEADFETDEKTVKCTEVFYFLKDQDLSISATRYQFAKEIAMACSAALCPH 421 L GF + K L++ T EK V+ F+K +L S YQ K S + Sbjct 1360 LIGFSTLKSPLDSGQTTTEKAGLQKPVYRFIKKSELFFSIFDYQILKNYRRLASNLI--- 1416 Query 422 LKTLKSNGMN 451 LK NG+N Sbjct 1417 ---LKQNGLN 1423 >gi|115438817|ref|NP_001043688.1| Gene info Os01g0642000 [Oryza sativa (japonica cultivar-group)] gi|55297099|dbj|BAD68743.1| Gene info carboxylesterase-like [Oryza sativa (japonica cultivar-group)] gi|55297181|dbj|BAD68856.1| Gene info carboxylesterase-like [Oryza sativa (japonica cultivar-group)] gi|113533219|dbj|BAF05602.1| Gene info Os01g0642000 [Oryza sativa (japonica cultivar-group)] Length=338 Score = 29.3 bits (64), Expect = 8.0 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = -2 Query 446 SHYSSEFSGEDTVQHYKPWLFLLQTDNELLK*INPGPLESRTPQYTLQSSHQFQNLLPVL 267 S + S GE+++ Y P + + Q+ ++ + + P L T Y++ SS +F L+P Sbjct 275 SIFFSIMEGEESLSRYSPEIVVKQSSSQTIALLPPIVLMHGTEDYSIPSSARFL-LMPSA 333 Query 266 FFHL 255 HL Sbjct 334 DVHL 337
  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 327
Number of extensions: 5
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 510
Length of database: 101054579
Length adjustment: 105
Effective length of query: 405
Effective length of database: 71302934
Effective search space: 4634690710
Effective search space used: 4634690710
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 63 (28.9 bits)