Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168942904-30453-21996968917.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig244 Length=496
Score E Sequences producing significant alignments: (Bits) Value gi|18401869|ref|NP_564513.1| unknown protein [Arabidopsis tha... 100 3e-21 gi|9802596|gb|AAF99798.1|AC012463_15 T2E6.19 [Arabidopsis thalia 100 3e-21 gi|21593644|gb|AAM65611.1| unknown [Arabidopsis thaliana] 99.4 6e-21 gi|108706681|gb|ABF94476.1| UPF0326 protein hag1, putative, e... 85.5 9e-17 gi|115451357|ref|NP_001049279.1| Os03g0198500 [Oryza sativa (... 85.5 9e-17 gi|18420889|ref|NP_568467.1| unknown protein [Arabidopsis tha... 63.9 3e-10 gi|18412886|ref|NP_565243.1| unknown protein [Arabidopsis tha... 61.2 2e-09 gi|6503281|gb|AAF14657.1|AC011713_5 Contains similarity to gb... 61.2 2e-09 gi|18400749|ref|NP_565588.1| unknown protein [Arabidopsis tha... 60.8 2e-09 gi|2245108|emb|CAB10530.1| EREBP-4 like protein [Arabidopsis ... 60.5 3e-09 gi|30684058|ref|NP_567528.2| unknown protein [Arabidopsis tha... 59.3 7e-09 gi|89257462|gb|ABD64953.1| hypothetical protein 25.t00041 [Brass 58.2 1e-08 gi|17529024|gb|AAL38722.1| unknown protein [Arabidopsis thali... 57.0 3e-08 gi|89257656|gb|ABD65143.1| hypothetical protein 40.t00020 [Brass 57.0 3e-08 gi|55771365|dbj|BAD72532.1| apoptosis-related protein PNAS-4 ... 57.0 3e-08 gi|15236618|ref|NP_194926.1| unknown protein [Arabidopsis tha... 57.0 3e-08 gi|15238059|ref|NP_199542.1| unknown protein [Arabidopsis tha... 56.6 4e-08 gi|115450095|ref|NP_001048648.1| Os03g0100900 [Oryza sativa (... 55.8 7e-08 gi|116310824|emb|CAH67612.1| OSIGBa0106P14.2 [Oryza sativa (indi 55.1 1e-07 gi|61656670|emb|CAI64488.1| OSJNBa0065H10.7 [Oryza sativa (japon 55.1 1e-07 gi|115459754|ref|NP_001053477.1| Os04g0548000 [Oryza sativa (... 55.1 1e-07 gi|32483094|emb|CAE02020.1| OSJNBa0079A21.22 [Oryza sativa (japo 55.1 1e-07 gi|115447677|ref|NP_001047618.1| Os02g0655500 [Oryza sativa (... 51.2 2e-06 gi|14140145|emb|CAC39062.1| putative protein [Oryza sativa] 51.2 2e-06 gi|92895182|gb|ABE92614.1| Protein of unknown function DUF862... 50.4 3e-06 gi|115468540|ref|NP_001057869.1| Os06g0560400 [Oryza sativa (... 49.3 7e-06 gi|92875892|gb|ABE83692.1| AT4g17486/AT4g17486 [Medicago truncat 48.9 9e-06 gi|89257591|gb|ABD65080.1| hypothetical protein 27.t00087 [Brass 40.4 0.003 gi|15224453|ref|NP_181350.1| transferase/ transferase, transf... 34.3 0.23 gi|110289448|gb|AAP54692.2| retrotransposon protein, putative... 32.0 1.1 gi|18403955|ref|NP_565823.1| unknown protein [Arabidopsis tha... 29.3 7.4 gi|16902296|dbj|BAB71853.1| phosphoenolpyruvate carboxylase kina 28.9 9.7
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 342 Number of extensions: 12 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 496 Length of database: 101054579 Length adjustment: 105 Effective length of query: 391 Effective length of database: 71302934 Effective search space: 4278176040 Effective search space used: 4278176040 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 63 (28.9 bits)