RID=1168943083-24521-22132112568.BLASTQ1, Contig249

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168943083-24521-22132112568.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

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Score E Sequences producing significant alignments: (Bits) Value gi|108707974|gb|ABF95769.1| retrotransposon protein, putative... 29.3 9.2 gi|115472619|ref|NP_001059908.1| Os07g0543500 [Oryza sativa (... 29.3 9.2

Alignments

 

>gi|108707974|gb|ABF95769.1|  retrotransposon protein, putative, Ty1-copia subclass [Oryza 
sativa (japonica cultivar-group)]
Length=991

 Score = 29.3 bits (64),  Expect = 9.2
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 16/77 (20%)
 Frame = +3

Query  213  NQLERGKEALLPCRGGSWRSSPVFQFI-FAFRYGVVRYNLHQQKTMTKTKQAAVFSPSKT  389
            NQLER  + L   RGG + S+   +FI F   YG++             ++ A +SP   
Sbjct  328  NQLERKIKQLRSDRGGEYFSN---EFISFCEEYGIIH------------ERTAPYSPQSN  372

Query  390  ALKNKALRTFTARLNKM  440
             +  +  RT T  +N M
Sbjct  373  GVAERKNRTLTEMVNAM  389


>gi|115472619|ref|NP_001059908.1|  Os07g0543500 [Oryza sativa (japonica cultivar-group)]
 gi|34395246|dbj|BAC83775.1|  putative BLE2 protein [Oryza sativa (japonica cultivar-group)]
 gi|113611444|dbj|BAF21822.1|  Os07g0543500 [Oryza sativa (japonica cultivar-group)]
Length=996

 Score = 29.3 bits (64),  Expect = 9.2
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 0/39 (0%)
 Frame = +3

Query  294  FAFRYGVVRYNLHQQKTMTKTKQAAVFSPSKTALKNKAL  410
            F  + GV   NL+    + K  + AVF+P KT+L N A+
Sbjct  393  FRGQLGVEYVNLYYAYALEKCMEKAVFAPKKTSLGNFAM  431

Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 366 Number of extensions: 10 Number of successful extensions: 3 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 3 Number of HSP's successfully gapped: 0 Length of query: 543 Length of database: 101054579 Length adjustment: 106 Effective length of query: 437 Effective length of database: 71019585 Effective search space: 5326468875 Effective search space used: 5326468875 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)

Distribution of 2 Blast Hits on the Query Sequence