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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168943409-9111-170128251099.BLASTQ4


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,458,890 sequences; 1,532,996,420 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig255
Length=540

Distribution of 36 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|81074563|gb|ABB55369.1|  histone deacetylase 2a-like [Solanum   93.2    5e-19
gi|73919938|sp|Q6V9I6|HD2A_SOLCH  Histone deacetylase 2a (HD2a...  93.2    5e-19
gi|84468402|dbj|BAE71284.1|  putative histone deacetylase [Trifol  80.9    3e-15
gi|2392769|gb|AAB70032.1|  putative histone deacetylase [Arabidop  79.7    6e-15
gi|18407844|ref|NP_566872.1|  HD2A (HISTONE DEACETYLASE 2A); n...  79.7    6e-15 UniGene infoGene info
gi|81074911|gb|ABB55378.1|  histone deacetylase-like protein-like  79.0    1e-14
gi|78191430|gb|ABB29936.1|  deacetylase-like protein [Solanum tub  78.2    2e-14
gi|76160994|gb|ABA40460.1|  histone deacetylase-like protein [Sol  78.2    2e-14
gi|76573369|gb|ABA46789.1|  unknown [Solanum tuberosum]            77.4    3e-14 UniGene info
gi|109716218|gb|ABG43091.1|  histone deacetylase HDAC2 [Triticum   77.0    4e-14 Gene info
gi|11066137|gb|AAG28473.1|AF195546_1  putative histone deacety...  75.1    1e-13 UniGene info
gi|30688577|ref|NP_851056.1|  HD2B (HISTONE DEACETYLASE 2B) [A...  75.1    1e-13 UniGene infoGene info
gi|115465847|ref|NP_001056523.1|  Os05g0597100 [Oryza sativa (...  72.8    7e-13 Gene info
gi|51854334|gb|AAU10714.1|  putative histone deacetylase HD2 [...  72.8    7e-13 Gene info
gi|7804960|gb|AAF70196.1|AF255711_1  putative histone deacetylase  72.8    7e-13 UniGene info
gi|7340659|emb|CAB82939.1|  histone deacetylase-like protein [Ara  71.2    2e-12
gi|30680179|ref|NP_195994.2|  HD2C (HISTONE DEACETYLASE 2C); n...  71.2    2e-12 UniGene infoGene info
gi|73919942|sp|Q9LZR5|HD2C_ARATH  Histone deacetylase 2c (HD-t...  71.2    2e-12
gi|14550106|gb|AAK67143.1|AF384033_1  HD2 type histone deacetylas  70.9    3e-12 UniGene infoGene info
gi|73919941|sp|Q9M4U5|HD2B_MAIZE  Histone deacetylase 2b (HD2b...  66.2    7e-11 Gene info
gi|73919937|sp|O24591|HD2A_MAIZE  Histone deacetylase 2a (HD2a...  63.9    3e-10 Gene info
gi|73919943|sp|Q9M4U4|HD2C_MAIZE  Histone deacetylase 2c (HD2c...  63.9    3e-10
gi|57900677|gb|AAW57802.1|  putative histone deacetylase HD2 [...  60.5    4e-09
gi|84453192|dbj|BAE71193.1|  putative Nucleolar histone deacetyla  60.5    4e-09
gi|73919939|sp|Q8LJS2|HD2A_SOYBN  Histone deacetylase 2a (HD2a...  60.1    5e-09 Gene info
gi|92880867|gb|ABE85891.1|  Histone deacetylase 2a , related [Med  57.8    2e-08
gi|30683668|ref|NP_850109.1|  HDT4 [Arabidopsis thaliana] >gi|...  48.9    1e-05 UniGene infoGene info
gi|30683663|ref|NP_565661.2|  HDT4 [Arabidopsis thaliana] >gi|...  48.9    1e-05 UniGene infoGene info
gi|92880869|gb|ABE85893.1|  Histone deacetylase 2a , related [Med  39.7    0.007
gi|115441743|ref|NP_001045151.1|  Os01g0909500 [Oryza sativa (...  37.4    0.033 Gene info
gi|56785368|dbj|BAD82326.1|  putative histone deacetylase 2 is...  33.5    0.48 
gi|115434520|ref|NP_001042018.1|  Os01g0148100 [Oryza sativa (...  30.4    4.1   Gene info
gi|18395197|ref|NP_564188.1|  unknown protein [Arabidopsis tha...  29.3    9.1   UniGene infoGene info
gi|18379242|ref|NP_563701.1|  SDD1 (STOMATAL DENSITY AND DISTR...  29.3    9.1   UniGene infoGene info
gi|42571601|ref|NP_973891.1|  unknown protein [Arabidopsis tha...  29.3    9.1   UniGene infoGene info
Alignments

>gi|81074563|gb|ABB55369.1|  histone deacetylase 2a-like [Solanum tuberosum]
Length=203

 Score = 93.2 bits (230),  Expect = 5e-19
 Identities = 59/120 (49%), Positives = 80/120 (66%), Gaps = 4/120 (3%)
 Frame = +3

Query  6    EAESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKTFVP  185
            ++ESV L VN DG+KLVLGTL+ +  PQ  FDLVFD++FELSHN K+GSVYF GYK   P
Sbjct  38   KSESVCLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDRDFELSHNLKSGSVYFFGYKATNP  97

Query  186  degdefdmssdeessedeeLPVAAAENGKAKTDVKTSKANAGKPDAV-KQAVKIEEPSNN  362
               +E +   D+    DE++P+  A +GK +   +  K+NAGK  A  KQ V+I EP+ +
Sbjct  98   --FEEEEDDEDDYDESDEDIPLTLANSGKPEPK-EAGKSNAGKDSASGKQKVRIVEPTKD  154


>gi|73919938|sp|Q6V9I6|HD2A_SOLCH  Histone deacetylase 2a (HD2a) (ScHD2a)
 gi|33667906|gb|AAQ24532.1|  histone deacetylase [Solanum chacoense]
Length=269

 Score = 93.2 bits (230),  Expect = 5e-19
 Identities = 59/120 (49%), Positives = 80/120 (66%), Gaps = 4/120 (3%)
 Frame = +3

Query  6    EAESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKTFVP  185
            ++ESV L VN DG+KLVLGTL+ +  PQ  FDLVFD++FELSHN K+GSVYF GYK   P
Sbjct  38   KSESVCLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDRDFELSHNLKSGSVYFFGYKATNP  97

Query  186  degdefdmssdeessedeeLPVAAAENGKAKTDVKTSKANAGKPDAV-KQAVKIEEPSNN  362
               +E +   D+    DE++P+  A +GK +   +  K+NAGK  A  KQ V+I EP+ +
Sbjct  98   --FEEEEDDEDDYDESDEDIPLTLANSGKPEPK-EAGKSNAGKDSASGKQKVRIVEPTKD  154


>gi|84468402|dbj|BAE71284.1|  putative histone deacetylase [Trifolium pratense]
Length=304

 Score = 80.9 bits (198),  Expect = 3e-15
 Identities = 55/120 (45%), Positives = 73/120 (60%), Gaps = 9/120 (7%)
 Frame = +3

Query  12   ESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKTFVPde  191
            E V+L+V  D QKL LGTLS +  PQ+SFDLVF++EFELSHNWK GS++F G+K    + 
Sbjct  41   EPVSLYVKIDNQKLQLGTLSSEKIPQISFDLVFEKEFELSHNWKYGSIFFTGFKM---ES  97

Query  192  gdefdmssdeessedeeLPVAAAENGKAKTDVKTSKANAGKPDAVK-QAVKIEEPSNNKK  368
                D   D + S +E+ PV AA NGK + +VK    N  KP   + Q  K  +P   +K
Sbjct  98   LLVSDDDEDSDDSIEEDNPVNAA-NGKPEVEVK----NGAKPGVNEAQQNKTSDPKKKQK  152


>gi|2392769|gb|AAB70032.1|  putative histone deacetylase [Arabidopsis thaliana]
Length=257

 Score = 79.7 bits (195),  Expect = 6e-15
 Identities = 38/57 (66%), Positives = 42/57 (73%), Gaps = 0/57 (0%)
 Frame = +3

Query  6    EAESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKT  176
            + E V LHV    Q LVLGTLS +N PQL  DLVFD+EFELSH W  GSVYF+GYKT
Sbjct  38   KGEFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYKT  94


>gi|18407844|ref|NP_566872.1| UniGene infoGene info HD2A (HISTONE DEACETYLASE 2A); nucleic acid binding / zinc ion 
binding [Arabidopsis thaliana]
 gi|73919936|sp|Q9FVE6|HD2A_ARATH Gene info Histone deacetylase 2a (HD-tuins protein 1)
 gi|11066135|gb|AAG28472.1|AF195545_1 UniGene infoGene info putative histone deacetylase [Arabidopsis thaliana]
 gi|17529220|gb|AAL38837.1| UniGene infoGene info putative histone deacetylase [Arabidopsis thaliana]
 gi|20466057|gb|AAM20363.1| UniGene infoGene info putative histone deacetylase [Arabidopsis thaliana]
Length=245

 Score = 79.7 bits (195),  Expect = 6e-15
 Identities = 38/57 (66%), Positives = 42/57 (73%), Gaps = 0/57 (0%)
 Frame = +3

Query  6    EAESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKT  176
            + E V LHV    Q LVLGTLS +N PQL  DLVFD+EFELSH W  GSVYF+GYKT
Sbjct  38   KGEFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYKT  94


>gi|81074911|gb|ABB55378.1|  histone deacetylase-like protein-like [Solanum tuberosum]
Length=191

 Score = 79.0 bits (193),  Expect = 1e-14
 Identities = 49/121 (40%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
 Frame = +3

Query  6    EAESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKTFVP  185
            EA+ V L +       V+GTLS ++ PQL FDLVF++EFELSH WKNGSV+F+GY    P
Sbjct  39   EAKYVPLRLTVGENSYVIGTLSAEDRPQLMFDLVFEKEFELSHGWKNGSVHFIGYTADDP  98

Query  186  degdefdmssdeessedeeLPVAAAENGKAKTDVKTSKANAGKPDAVKQAVKIEEPSNNK  365
               +           E+    V  A NGK + DVK  K +A K   VK A   +   + K
Sbjct  99   SGDEIDSGDDVFSDEEN----VLEALNGKLEADVKDVKPDAKKSAPVKDAKNAKVAESKK  154

Query  366  K  368
            +
Sbjct  155  E  155


>gi|78191430|gb|ABB29936.1|  deacetylase-like protein [Solanum tuberosum]
Length=299

 Score = 78.2 bits (191),  Expect = 2e-14
 Identities = 51/121 (42%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
 Frame = +3

Query  6    EAESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKTFVP  185
            EA+ V L +       V+GTLS ++ PQL FDLVF++EFELSH WKNGSV+F+GY    P
Sbjct  39   EAKYVPLRLTVGENSYVIGTLSAEDRPQLMFDLVFEKEFELSHGWKNGSVHFIGYTADDP  98

Query  186  degdefdmssdeessedeeLPVAAAENGKAKTDVKTSKANAGKPDAVKQAVKIEEPSNNK  365
               +           E+    V  A NGK + DVK  K +A K   VK  VK  + + +K
Sbjct  99   SGDEIDSGDDVFSDEEN----VLEALNGKLEADVKDVKPDAKKSAPVKD-VKNAKVAESK  153

Query  366  K  368
            K
Sbjct  154  K  154


>gi|76160994|gb|ABA40460.1|  histone deacetylase-like protein [Solanum tuberosum]
Length=223

 Score = 78.2 bits (191),  Expect = 2e-14
 Identities = 51/121 (42%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
 Frame = +3

Query  6    EAESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKTFVP  185
            EA+ V L +       V+GTLS ++ PQL FDLVF++EFELSH WKNGSV+F+GY    P
Sbjct  39   EAKYVPLRLTVGENSYVIGTLSAEDRPQLMFDLVFEKEFELSHGWKNGSVHFIGYTADDP  98

Query  186  degdefdmssdeessedeeLPVAAAENGKAKTDVKTSKANAGKPDAVKQAVKIEEPSNNK  365
               +           E+    V  A NGK + DVK  K +A K   VK  VK  + + +K
Sbjct  99   SGDEIDSGDDVFSDEEN----VLEALNGKLEADVKDVKPDAKKSAPVKD-VKNAKVAESK  153

Query  366  K  368
            K
Sbjct  154  K  154


>gi|76573369|gb|ABA46789.1| UniGene info unknown [Solanum tuberosum]
Length=313

 Score = 77.4 bits (189),  Expect = 3e-14
 Identities = 48/121 (39%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
 Frame = +3

Query  6    EAESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKTFVP  185
            EA+ V L +       V+GTLS ++ PQL FDLVF++EFELSH WKNGSV+F+GY    P
Sbjct  6    EAKYVPLRLTVGDNSYVIGTLSAEDRPQLMFDLVFEKEFELSHGWKNGSVHFIGYTADDP  65

Query  186  degdefdmssdeessedeeLPVAAAENGKAKTDVKTSKANAGKPDAVKQAVKIEEPSNNK  365
               +           E+    V  A NGK + DVK  K +A K   VK     +  ++ K
Sbjct  66   SGDEIDSGDDVFSDEEN----VLEALNGKLEADVKDVKPDAKKSAPVKDEKNAKIAASKK  121

Query  366  K  368
            +
Sbjct  122  E  122


>gi|109716218|gb|ABG43091.1| Gene info histone deacetylase HDAC2 [Triticum aestivum]
Length=310

 Score = 77.0 bits (188),  Expect = 4e-14
 Identities = 52/114 (45%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
 Frame = +3

Query  12   ESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKTFVP--  185
            +  T+ V    QKL +GTLS   FPQ+ FDLVF++EFELSHN K  SV+F GYK F P  
Sbjct  38   DKATMFVKIGDQKLAIGTLSTDKFPQIQFDLVFEKEFELSHNSKTSSVFFSGYKVFQPAE  97

Query  186  degdefdmssdeessedeeLPVAAAENGK--AKTDVKTSKANAGKPDAVKQAVK  341
             +  +FD   D E  ED+ +P    ENGK  AK   K  K +   P   K A K
Sbjct  98   GDEMDFDSEDDSEEEEDKIIPALTKENGKPEAKEQKKQVKIDTAAPSKSKAAAK  151


>gi|11066137|gb|AAG28473.1|AF195546_1 UniGene info putative histone deacetylase [Arabidopsis thaliana]
 gi|2854070|gb|AAC02539.1| UniGene info putative histone deacetylase [Arabidopsis thaliana]
Length=305

 Score = 75.1 bits (183),  Expect = 1e-13
 Identities = 49/121 (40%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
 Frame = +3

Query  12   ESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKT-FVPd  188
            ESV L V   G KLV+GTLS   FPQ+SFDLVFD+EFELSH+    +V+F+GYK+  +  
Sbjct  39   ESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYKSPNIEQ  98

Query  189  egdefdmssdeessedeeLPVAAAENGKA-KTDVKTSKANAGKPDAVKQAVKIEEPSNNK  365
            +        D   +     P A   NG A    VK       KP  VK A   E+P +++
Sbjct  99   DDFTSSDDEDVPEAVPAPAPTAVTANGNAGAAVVKADTKPKAKPAEVKPAE--EKPESDE  156

Query  366  K  368
            +
Sbjct  157  E  157


>gi|30688577|ref|NP_851056.1| UniGene infoGene info HD2B (HISTONE DEACETYLASE 2B) [Arabidopsis thaliana]
 gi|73919940|sp|Q56WH4|HD2B_ARATH Gene info Histone deacetylase 2b (HD-tuins protein 2)
 gi|10178239|dbj|BAB11671.1| Gene info histone deacetylase-like protein [Arabidopsis thaliana]
 gi|16649047|gb|AAL24375.1| UniGene infoGene info histone deacetylase-like protein [Arabidopsis thaliana]
 gi|19310471|gb|AAL84970.1| UniGene infoGene info AT5g22650/MDJ22_7 [Arabidopsis thaliana]
 gi|21689603|gb|AAM67423.1| UniGene infoGene info AT5g22650/MDJ22_7 [Arabidopsis thaliana]
Length=306

 Score = 75.1 bits (183),  Expect = 1e-13
 Identities = 49/121 (40%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
 Frame = +3

Query  12   ESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKT-FVPd  188
            ESV L V   G KLV+GTLS   FPQ+SFDLVFD+EFELSH+    +V+F+GYK+  +  
Sbjct  39   ESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYKSPNIEQ  98

Query  189  egdefdmssdeessedeeLPVAAAENGKA-KTDVKTSKANAGKPDAVKQAVKIEEPSNNK  365
            +        D   +     P A   NG A    VK       KP  VK A   E+P +++
Sbjct  99   DDFTSSDDEDVPEAVPAPAPTAVTANGNAGAAVVKADTKPKAKPAEVKPAE--EKPESDE  156

Query  366  K  368
            +
Sbjct  157  E  157


>gi|115465847|ref|NP_001056523.1| Gene info Os05g0597100 [Oryza sativa (japonica cultivar-group)]
 gi|113580074|dbj|BAF18437.1| Gene info Os05g0597100 [Oryza sativa (japonica cultivar-group)]
Length=297

 Score = 72.8 bits (177),  Expect = 7e-13
 Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 0/59 (0%)
 Frame = +3

Query  9    AESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKTFVP  185
            +++  ++V  D QKLV+GTLS   FPQ+ FDLVFD+EFELSH  K  SV+F GYK   P
Sbjct  38   SDNAVMYVKTDDQKLVIGTLSADKFPQIQFDLVFDKEFELSHTSKTASVFFSGYKVSQP  96


>gi|51854334|gb|AAU10714.1| Gene info putative histone deacetylase HD2 [Oryza sativa (japonica cultivar-group)]
Length=297

 Score = 72.8 bits (177),  Expect = 7e-13
 Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 0/59 (0%)
 Frame = +3

Query  9    AESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKTFVP  185
            +++  ++V  D QKLV+GTLS   FPQ+ FDLVFD+EFELSH  K  SV+F GYK   P
Sbjct  38   SDNAVMYVKTDDQKLVIGTLSADKFPQIQFDLVFDKEFELSHTSKTASVFFSGYKVSQP  96


>gi|7804960|gb|AAF70196.1|AF255711_1 UniGene info putative histone deacetylase HD2 [Oryza sativa]
Length=297

 Score = 72.8 bits (177),  Expect = 7e-13
 Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 0/59 (0%)
 Frame = +3

Query  9    AESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKTFVP  185
            +++  ++V  D QKLV+GTLS   FPQ+ FDLVFD+EFELSH  K  SV+F GYK   P
Sbjct  38   SDNAVMYVKTDDQKLVIGTLSADKFPQIQFDLVFDKEFELSHTSKTASVFFSGYKVSQP  96


>gi|7340659|emb|CAB82939.1|  histone deacetylase-like protein [Arabidopsis thaliana]
Length=296

 Score = 71.2 bits (173),  Expect = 2e-12
 Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 0/54 (0%)
 Frame = +3

Query  12   ESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYK  173
            E + L+V     KL++GTLSH+ FPQLS ++V ++ F LSH WKNGSV+F GYK
Sbjct  40   EPIQLYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYK  93


>gi|30680179|ref|NP_195994.2| UniGene infoGene info HD2C (HISTONE DEACETYLASE 2C); nucleic acid binding / zinc ion 
binding [Arabidopsis thaliana]
Length=287

 Score = 71.2 bits (173),  Expect = 2e-12
 Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 0/54 (0%)
 Frame = +3

Query  12   ESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYK  173
            E + L+V     KL++GTLSH+ FPQLS ++V ++ F LSH WKNGSV+F GYK
Sbjct  40   EPIQLYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYK  93


>gi|73919942|sp|Q9LZR5|HD2C_ARATH  Histone deacetylase 2c (HD-tuins protein 3)
 gi|7804963|gb|AAF70197.1|AF255712_1 UniGene info putative histone deacetylase HD2c [Arabidopsis thaliana]
 gi|13926268|gb|AAK49605.1|AF372889_1 UniGene info AT5g03740/F17C15_160 [Arabidopsis thaliana]
 gi|9758002|dbj|BAB08599.1|  histone deacetylase HD2c [Arabidopsis thaliana]
 gi|21360990|gb|AAM49770.1| UniGene info HDT3 [Arabidopsis thaliana]
 gi|22655422|gb|AAM98303.1| UniGene info At5g03740/F17C15_160 [Arabidopsis thaliana]
Length=294

 Score = 71.2 bits (173),  Expect = 2e-12
 Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 0/54 (0%)
 Frame = +3

Query  12   ESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYK  173
            E + L+V     KL++GTLSH+ FPQLS ++V ++ F LSH WKNGSV+F GYK
Sbjct  40   EPIQLYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYK  93


>gi|14550106|gb|AAK67143.1|AF384033_1 UniGene infoGene info HD2 type histone deacetylase HDA106 [Zea mays]
Length=286

 Score = 70.9 bits (172),  Expect = 3e-12
 Identities = 35/59 (59%), Positives = 44/59 (74%), Gaps = 0/59 (0%)
 Frame = +3

Query  9    AESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKTFVP  185
            +E+  L VN D +KLVLGTLS +  PQ+S DLVFD++FEL HN K  SV+F GYK+ VP
Sbjct  38   SENAILSVNIDDKKLVLGTLSVEKHPQISCDLVFDKDFELPHNSKTRSVFFRGYKSPVP  96


>gi|73919941|sp|Q9M4U5|HD2B_MAIZE Gene info Histone deacetylase 2b (HD2b) (Zm-HD2b)
 gi|7716948|gb|AAF68624.1|AF254072_1 UniGene infoGene info histone deacetylase 2 isoform b [Zea mays]
Length=303

 Score = 66.2 bits (160),  Expect = 7e-11
 Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 0/60 (0%)
 Frame = +3

Query  6    EAESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKTFVP  185
            +++S  ++V  D +KL +GTLS   +PQ+ FDLVF++EFELSH  K  SV+F GYK   P
Sbjct  36   KSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP  95


>gi|73919937|sp|O24591|HD2A_MAIZE Gene info Histone deacetylase 2a (HD2a) (Zm-HD2a) (Nucleolar histone deacetylase 
HD2-p39)
 gi|2257756|gb|AAB63262.1| UniGene infoGene info nucleolar histone deacetylase HD2-p39 [Zea mays]
 gi|3650466|gb|AAC61674.1| Gene info histone deacetylase HD2-p39 [Zea mays]
Length=307

 Score = 63.9 bits (154),  Expect = 3e-10
 Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 0/60 (0%)
 Frame = +3

Query  6    EAESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKTFVP  185
            ++++  ++V  D QKL +GTLS    P + FDL+FD+EFELSH  K  SV+F GYK   P
Sbjct  36   KSDNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKVEQP  95


>gi|73919943|sp|Q9M4U4|HD2C_MAIZE  Histone deacetylase 2c (HD2c) (Zm-HD2c)
 gi|7716950|gb|AAF68625.1|AF254073_1 UniGene info histone deacetylase 2 isoform c [Zea mays]
Length=300

 Score = 63.9 bits (154),  Expect = 3e-10
 Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 0/60 (0%)
 Frame = +3

Query  6    EAESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKTFVP  185
            ++++  ++V  D QKL +GTLS    P + FDL+FD+EFELSH  K  SV+F GYK   P
Sbjct  36   KSDNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKVEQP  95


>gi|57900677|gb|AAW57802.1|  putative histone deacetylase HD2 [Oryza sativa (japonica cultivar-group)]
Length=274

 Score = 60.5 bits (145),  Expect = 4e-09
 Identities = 27/49 (55%), Positives = 35/49 (71%), Gaps = 0/49 (0%)
 Frame = +3

Query  9    AESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSV  155
            +++  ++V  D QKLV+GTLS   FPQ+ FDLVFD+EFELSH  K   V
Sbjct  38   SDNAVMYVKTDDQKLVIGTLSADKFPQIQFDLVFDKEFELSHTSKTAKV  86


>gi|84453192|dbj|BAE71193.1|  putative Nucleolar histone deacetylase [Trifolium pratense]
Length=316

 Score = 60.5 bits (145),  Expect = 4e-09
 Identities = 29/54 (53%), Positives = 36/54 (66%), Gaps = 0/54 (0%)
 Frame = +3

Query  12   ESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYK  173
            E V ++V  DGQKLVLGTL     P  + ++V D+  ELSHN KN +VYF GYK
Sbjct  44   EPVVVYVKVDGQKLVLGTLIKDAIPHTTLNIVLDRVAELSHNSKNAAVYFSGYK  97


>gi|73919939|sp|Q8LJS2|HD2A_SOYBN Gene info Histone deacetylase 2a (HD2a) (Nucleolar histone deacetylase 
HD2-p39)
 gi|22597156|gb|AAN03465.1| UniGene infoGene info nucleolar histone deacetylase HD2-P39 [Glycine max]
Length=295

 Score = 60.1 bits (144),  Expect = 5e-09
 Identities = 29/54 (53%), Positives = 35/54 (64%), Gaps = 0/54 (0%)
 Frame = +3

Query  12   ESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYK  173
            E V L++    QK+VLGTLS    P LS DLV D + ELSH  K+ SV+F GYK
Sbjct  43   EPVVLYLKVGEQKIVLGTLSRDGIPHLSLDLVLDSDSELSHTSKSASVFFCGYK  96


>gi|92880867|gb|ABE85891.1|  Histone deacetylase 2a , related [Medicago truncatula]
Length=267

 Score = 57.8 bits (138),  Expect = 2e-08
 Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 0/55 (0%)
 Frame = +3

Query  9    AESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYK  173
            +ESV L++     K V+GTL+  +FPQ + ++V D E ELSHN K  SV+F GYK
Sbjct  46   SESVVLYLKVADMKFVIGTLTKDSFPQTTLNIVLDGESELSHNSKGASVHFSGYK  100


>gi|30683668|ref|NP_850109.1| UniGene infoGene info HDT4 [Arabidopsis thaliana]
 gi|20197450|gb|AAC73016.2| Gene info unknown protein [Arabidopsis thaliana]
Length=181

 Score = 48.9 bits (115),  Expect = 1e-05
 Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +3

Query  6    EAESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKTF  179
            E  +V + +  D    ++G LS Q FPQ S DL    EFE+SHN    SVY +GY+TF
Sbjct  19   ETFAVYVKIGDDENGFMIGNLS-QKFPQFSIDLYLGHEFEISHN-STSSVYLIGYRTF  74


>gi|30683663|ref|NP_565661.2| UniGene infoGene info HDT4 [Arabidopsis thaliana]
 gi|73919944|sp|Q9M4T3|HD2D_ARATH Gene info Histone deacetylase 2d (HD-tuins protein 4)
 gi|7804965|gb|AAF70198.1|AF255713_1 UniGene infoGene info putative histone deacetylase HD2d [Arabidopsis thaliana]
 gi|29824372|gb|AAP04146.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
 gi|30793819|gb|AAP40362.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
 gi|110739095|dbj|BAF01464.1| Gene info putative histone deacetylase HD2d [Arabidopsis thaliana]
Length=203

 Score = 48.9 bits (115),  Expect = 1e-05
 Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +3

Query  6    EAESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKTF  179
            E  +V + +  D    ++G LS Q FPQ S DL    EFE+SHN    SVY +GY+TF
Sbjct  41   ETFAVYVKIGDDENGFMIGNLS-QKFPQFSIDLYLGHEFEISHN-STSSVYLIGYRTF  96


>gi|92880869|gb|ABE85893.1|  Histone deacetylase 2a , related [Medicago truncatula]
Length=298

 Score = 39.7 bits (91),  Expect = 0.007
 Identities = 17/27 (62%), Positives = 19/27 (70%), Gaps = 0/27 (0%)
 Frame = +3

Query  99   DLVFDQEFELSHNWKNGSVYFLGYKTF  179
            D+  D E ELSHN KN +VYF GYK F
Sbjct  2    DIFLDDESELSHNSKNATVYFSGYKAF  28


>gi|115441743|ref|NP_001045151.1| Gene info Os01g0909500 [Oryza sativa (japonica cultivar-group)]
 gi|56785371|dbj|BAD82329.1| Gene info putative histone deacetylase 2 isoform b [Oryza sativa (japonica 
cultivar-group)]
 gi|113534682|dbj|BAF07065.1| Gene info Os01g0909500 [Oryza sativa (japonica cultivar-group)]
Length=320

 Score = 37.4 bits (85),  Expect = 0.033
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 0/53 (0%)
 Frame = +3

Query  15   SVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYK  173
            +V + V  + +K  +GTLS +  P +  D  F + F+L H      V F GY+
Sbjct  43   NVKVFVEVNDEKFAIGTLSSKRHPHIKVDFCFKKNFQLFHTSLISKVAFCGYQ  95


>gi|56785368|dbj|BAD82326.1|  putative histone deacetylase 2 isoform b [Oryza sativa (japonica 
cultivar-group)]
Length=538

 Score = 33.5 bits (75),  Expect = 0.48
 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 0/33 (0%)
 Frame = +3

Query  12   ESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVF  110
            E+V +    DG++++LGTLS ++ PQLS DL +
Sbjct  285  ENVQVFGEVDGKRILLGTLSVEHRPQLSIDLEY  317


>gi|115434520|ref|NP_001042018.1| Gene info Os01g0148100 [Oryza sativa (japonica cultivar-group)]
 gi|54290325|dbj|BAD61129.1| Gene info unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113531549|dbj|BAF03932.1| Gene info Os01g0148100 [Oryza sativa (japonica cultivar-group)]
Length=382

 Score = 30.4 bits (67),  Expect = 4.1
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query  12   ESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGY  170
            E + +HV ++ +   LG +S  +    S  L F+ +F LSH  +   V F GY
Sbjct  299  EEIDVHVRSNKEVKRLGVISSYD-TSFSCKLDFEDQFTLSHTSQEEDVVFYGY  350


 Score = 29.3 bits (64),  Expect = 9.1
 Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query  12   ESVTLHVNADGQKLVLGTLSHQNFPQLSFDLVFDQEFELSHNWKNGSVYFLGYKTF  179
            + + +++    + + +G+++    P+    L+  +E +L HN +  SVYF GY+ +
Sbjct  195  DPIGIYLKDKNETMCIGSITKAQ-PRARLWLMLSEEMKLFHNSERRSVYFNGYEFY  249


>gi|18395197|ref|NP_564188.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
 gi|15982901|gb|AAL09797.1| UniGene infoGene info At1g23060/T26J12_16 [Arabidopsis thaliana]
 gi|19699224|gb|AAL90978.1| UniGene infoGene info At1g23060/T26J12_16 [Arabidopsis thaliana]
Length=367

 Score = 29.3 bits (64),  Expect = 9.1
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 0/43 (0%)
 Frame = +3

Query  243  LPVAAAENGKAKTDVKTSKANAGKPDAVKQAVKIEEPSNNKKT  371
            +P   + +  AKT V T +    KP  + + V  + P+ +KKT
Sbjct  185  IPKGYSPSSNAKTSVDTKRQKELKPKRIVETVACQAPATSKKT  227


>gi|18379242|ref|NP_563701.1| UniGene infoGene info SDD1 (STOMATAL DENSITY AND DISTRIBUTION); subtilase [Arabidopsis 
thaliana]
 gi|3142298|gb|AAC16749.1| Gene info Strong similarity to protein SBT1 gb|X98929 from Lycopersicum 
esculentum. [Arabidopsis thaliana]
Length=775

 Score = 29.3 bits (64),  Expect = 9.1
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 0/28 (0%)
 Frame = -2

Query  290  FYICLSFSIFCSSHRKLLILATFFITRH  207
            F++C+ F +FCSS  ++L   T+ +  H
Sbjct  6    FFLCIIFLLFCSSSSEILQKQTYIVQLH  33


>gi|42571601|ref|NP_973891.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
 gi|2829905|gb|AAC00613.1| Gene info Unknown protein [Arabidopsis thaliana]
Length=306

 Score = 29.3 bits (64),  Expect = 9.1
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 0/43 (0%)
 Frame = +3

Query  243  LPVAAAENGKAKTDVKTSKANAGKPDAVKQAVKIEEPSNNKKT  371
            +P   + +  AKT V T +    KP  + + V  + P+ +KKT
Sbjct  124  IPKGYSPSSNAKTSVDTKRQKELKPKRIVETVACQAPATSKKT  166







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 267
Number of extensions: 8
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 540
Length of database: 101054579
Length adjustment: 106
Effective length of query: 434
Effective length of database: 71019585
Effective search space: 5255449290
Effective search space used: 5255449290
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 64 (29.3 bits)