Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168929759-21036-132498052157.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig26 Length=501
Score E Sequences producing significant alignments: (Bits) Value gi|18423709|ref|NP_568820.1| RNA binding [Arabidopsis thalian... 37.4 0.028 gi|30696564|ref|NP_851194.1| RNA binding [Arabidopsis thaliana] 37.4 0.028 gi|9758107|dbj|BAB08579.1| unnamed protein product [Arabidopsis 37.4 0.028 gi|30681829|ref|NP_850032.1| unknown protein [Arabidopsis thalia 34.7 0.18 gi|8096269|dbj|BAA95789.1| KED [Nicotiana tabacum] 34.7 0.18 gi|6634708|gb|AAF19721.1|AF176782_1 MADS box transcription facto 33.9 0.31 gi|15235717|ref|NP_195495.1| unknown protein [Arabidopsis tha... 33.1 0.53 gi|15241487|ref|NP_196418.1| unknown protein [Arabidopsis tha... 32.7 0.69 gi|1154629|emb|CAA64428.1| pollen coat protein [Brassica olerace 32.7 0.69 gi|18411211|ref|NP_565140.1| unknown protein [Arabidopsis tha... 32.3 0.90 gi|9558597|gb|AAF88160.1|AC026234_11 Contains weak similarity... 32.3 0.90 gi|92894451|gb|ABE92235.1| hypothetical protein MtrDRAFT_AC14... 32.0 1.2 gi|403336|emb|CAA81262.1| legumin; legumin-related high molec... 32.0 1.2 gi|92871914|gb|ABE80789.1| Prefoldin [Medicago truncatula] 31.6 1.5 gi|15235325|ref|NP_193749.1| unknown protein [Arabidopsis tha... 31.2 2.0 gi|110741690|dbj|BAE98791.1| hypothetical protein [Arabidopsis t 30.8 2.6 gi|12002141|gb|AAG43200.1|AF112150_1 MADS box protein 3 [Zea may 30.8 2.6 gi|4914334|gb|AAD32882.1|AC005489_20 F14N23.20 [Arabidopsis thal 30.8 2.6 gi|15218489|ref|NP_172503.1| RNA binding / nucleic acid binding 30.8 2.6 gi|92890566|gb|ABE90421.1| hypothetical protein MtrDRAFT_AC14... 30.4 3.4 gi|42569661|ref|NP_181151.3| ATTIM44-2 [Arabidopsis thaliana]... 30.4 3.4 gi|87240431|gb|ABD32289.1| Tropomyosin; tRNA-binding arm; t-snar 30.4 3.4 gi|92893751|gb|ABE91887.1| hypothetical protein MtrDRAFT_AC14... 30.0 4.5 gi|92890422|gb|ABE90364.1| Protein kinase [Medicago truncatula] 30.0 4.5 gi|2245100|emb|CAB10522.1| DNA-binding protein homolog [Arabi... 30.0 4.5 gi|15236068|ref|NP_193471.1| unknown protein [Arabidopsis thalia 30.0 4.5 gi|15241164|ref|NP_200438.1| WRKY2; transcription factor [Ara... 30.0 4.5 gi|13676415|dbj|BAB41198.1| hypothetical protein [Glycine max] 30.0 4.5 gi|92871557|gb|ABE80504.1| Retrotransposon gag protein; Retro... 29.6 5.8 gi|15242707|ref|NP_198861.1| unknown protein [Arabidopsis tha... 29.6 5.8 gi|28393775|gb|AAO42297.1| unknown protein [Arabidopsis thaliana 29.6 5.8 gi|30699400|ref|NP_178040.2| unknown protein [Arabidopsis thalia 29.6 5.8 gi|15219083|ref|NP_173593.1| unknown protein [Arabidopsis tha... 29.6 5.8 gi|92881216|gb|ABE86107.1| Ubiquitin [Medicago truncatula] 29.3 7.6 gi|62751091|dbj|BAD95793.1| hypothetical protein [Solanum lycope 29.3 7.6 gi|18399981|ref|NP_566455.1| unknown protein [Arabidopsis tha... 29.3 7.6 gi|55741065|gb|AAV64207.1| putative paramyosin [Zea mays] >gi... 29.3 7.6 gi|1905934|gb|AAB50181.1| MADS box protein 29.3 7.6 gi|27804371|gb|AAO22987.1| MADS-box transcription factor CDM1... 29.3 7.6 gi|28381535|gb|AAF12699.2| PTM1 [Populus tremuloides] 29.3 7.6 gi|87162938|gb|ABD28733.1| conserved hypothetical protein [Me... 29.3 7.6 gi|42572369|ref|NP_974280.1| DNA binding / protein binding / ... 29.3 7.6 gi|15229696|ref|NP_187729.1| DNA binding / protein binding / ... 29.3 7.6 gi|50470538|emb|CAH04879.1| MADS domain protein [Gerbera hybrid 29.3 7.6 gi|9294542|dbj|BAB02805.1| unnamed protein product [Arabidopsis 29.3 7.6 gi|37905913|gb|AAO38853.1| dehydrin-like protein [Capsicum annuu 28.9 10.0 gi|18401896|ref|NP_565678.1| CXIP4 (CAX INTERACTING PROTEIN 4... 28.9 10.0 gi|3152582|gb|AAC17063.1| YUP8H12R.20 [Arabidopsis thaliana] 28.9 10.0 gi|27651999|gb|AAO17572.1| CAX-interacting protein 4 [Arabidopsi 28.9 10.0 gi|3395938|gb|AAC62015.1| polypyrimidine tract-binding protei... 28.9 10.0 gi|115470767|ref|NP_001058982.1| Os07g0168000 [Oryza sativa (... 28.9 10.0 gi|18399977|ref|NP_566454.1| transcription factor [Arabidopsi... 28.9 10.0
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 314 Number of extensions: 4 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 501 Length of database: 101054579 Length adjustment: 105 Effective length of query: 396 Effective length of database: 71302934 Effective search space: 4420781908 Effective search space used: 4420781908 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 63 (28.9 bits)