RID=1168943556-32676-72940433877.BLASTQ4, Contig264

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168943556-32676-72940433877.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig264
Length=407

Distribution of 11 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|42362268|gb|AAS13367.1|  cyclin-dependent kinases regulatory s  74.7    9e-14 
gi|117165994|dbj|BAF36296.1|  hypothetical protein [Ipomoea trifi  74.3    1e-13
gi|45935118|gb|AAS79576.1|  putative CDK regulatory subunit [Ipom  74.3    1e-13
gi|15226297|ref|NP_180364.1|  CKS2; cyclin-dependent protein k...  73.6    2e-13 
gi|27435806|gb|AAO13226.1|AF149014_1  CKS1 protein [Populus tremu  73.6    2e-13 
gi|15226294|ref|NP_180363.1|  CKS1; cyclin-dependent protein k...  73.2    3e-13 
gi|40641585|emb|CAE54272.1|  putative cyclin-dependent kinase ...  72.4    5e-13 
gi|115450713|ref|NP_001048957.1|  Os03g0146300 [Oryza sativa (...  72.0    6e-13 
gi|55978016|gb|AAV68608.1|  cyclin-dependent kinases regulator...  65.1    7e-11
gi|116058759|emb|CAL54466.1|  cyclin-dependent kinases regulat...  58.9    5e-09
gi|9757723|dbj|BAB08248.1|  unnamed protein product [Arabidopsis   28.5    7.5

Alignments

 

>gi|42362268|gb|AAS13367.1|  cyclin-dependent kinases regulatory subunit [Glycine max]
Length=88

 Score = 74.7 bits (182),  Expect = 9e-14
 Identities = 45/47 (95%), Positives = 46/47 (97%), Gaps = 0/47 (0%)
 Frame = +2

Query  11   RAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYqqqqenqaqqaMLAK  151
            RAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQ+ML K
Sbjct  42   RAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQSMLVK  88


>gi|117165994|dbj|BAF36296.1|  hypothetical protein [Ipomoea trifida]
Length=1291

 Score = 74.3 bits (181),  Expect = 1e-13
 Identities = 42/47 (89%), Positives = 45/47 (95%), Gaps = 0/47 (0%)
 Frame = +2

Query  11    RAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYqqqqenqaqqaMLAK  151
             RAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQE+QAQ  ++AK
Sbjct  1245  RAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQESQAQLNLIAK  1291


>gi|45935118|gb|AAS79576.1|  putative CDK regulatory subunit [Ipomoea trifida]
Length=88

 Score = 74.3 bits (181),  Expect = 1e-13
 Identities = 42/47 (89%), Positives = 45/47 (95%), Gaps = 0/47 (0%)
 Frame = +2

Query  11   RAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYqqqqenqaqqaMLAK  151
            RAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQE+QAQ  ++AK
Sbjct  42   RAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQESQAQLNLIAK  88


>gi|15226297|ref|NP_180364.1|  CKS2; cyclin-dependent protein kinase [Arabidopsis thaliana]
 gi|4510419|gb|AAD21505.1|  putative cyclin-dependent kinase regulatory subunit [Arabidopsis 
thaliana]
 gi|38566522|gb|AAR24151.1|  At2g27970 [Arabidopsis thaliana]
 gi|40823612|gb|AAR92293.1|  At2g27970 [Arabidopsis thaliana]
Length=83

 Score = 73.6 bits (179),  Expect = 2e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%), Gaps = 0/32 (0%)
 Frame = +2

Query  11   RAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNY  106
            RAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNY
Sbjct  42   RAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNY  73


>gi|27435806|gb|AAO13226.1|AF149014_1  CKS1 protein [Populus tremula x Populus tremuloides]
Length=83

 Score = 73.6 bits (179),  Expect = 2e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%), Gaps = 0/32 (0%)
 Frame = +2

Query  11   RAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNY  106
            RAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNY
Sbjct  42   RAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNY  73


>gi|15226294|ref|NP_180363.1|  CKS1; cyclin-dependent protein kinase [Arabidopsis thaliana]
 gi|2274859|emb|CAA03859.1|  Cks1 protein [Arabidopsis thaliana]
 gi|4510420|gb|AAD21506.1|  putative cyclin-dependent kinase regulatory subunit [Arabidopsis 
thaliana]
 gi|21593913|gb|AAM65878.1|  putative cyclin-dependent kinase regulatory subunit [Arabidopsis 
thaliana]
 gi|51969580|dbj|BAD43482.1|  putative cyclin-dependent kinase regulatory subunit [Arabidopsis 
thaliana]
 gi|51969798|dbj|BAD43591.1|  putative cyclin-dependent kinase regulatory subunit [Arabidopsis 
thaliana]
 gi|51970380|dbj|BAD43882.1|  putative cyclin-dependent kinase regulatory subunit [Arabidopsis 
thaliana]
 gi|88010880|gb|ABD38867.1|  At2g27960 [Arabidopsis thaliana]
Length=87

 Score = 73.2 bits (178),  Expect = 3e-13
 Identities = 31/32 (96%), Positives = 32/32 (100%), Gaps = 0/32 (0%)
 Frame = +2

Query  11   RAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNY  106
            RAIGVQQSRGWVHYA+HRPEPHIMLFRRPLNY
Sbjct  42   RAIGVQQSRGWVHYAVHRPEPHIMLFRRPLNY  73


>gi|40641585|emb|CAE54272.1|  putative cyclin-dependent kinase regulatory subunit [Triticum 
aestivum]
Length=90

 Score = 72.4 bits (176),  Expect = 5e-13
 Identities = 30/32 (93%), Positives = 32/32 (100%), Gaps = 0/32 (0%)
 Frame = +2

Query  11   RAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNY  106
            RA+GVQQSRGWVHYA+HRPEPHIMLFRRPLNY
Sbjct  42   RALGVQQSRGWVHYAVHRPEPHIMLFRRPLNY  73


>gi|115450713|ref|NP_001048957.1|  Os03g0146300 [Oryza sativa (japonica cultivar-group)]
 gi|15451612|gb|AAK98736.1|AC090485_15  Putative cyclin-dependent kinase regulatory subunit [Oryza sativa]
 gi|46487749|gb|AAS99236.1|  cyclin-dependent kinase subunit [Oryza sativa (japonica cultivar-group)]
 gi|108706167|gb|ABF93962.1|  cyclin-dependent kinases regulatory subunit, putative, expressed 
[Oryza sativa (japonica cultivar-group)]
 gi|113547428|dbj|BAF10871.1|  Os03g0146300 [Oryza sativa (japonica cultivar-group)]
Length=90

 Score = 72.0 bits (175),  Expect = 6e-13
 Identities = 31/32 (96%), Positives = 32/32 (100%), Gaps = 0/32 (0%)
 Frame = +2

Query  11   RAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNY  106
            RAIGVQQSRGWVHYAIHRPEPHIMLFRRPLN+
Sbjct  42   RAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNF  73


>gi|55978016|gb|AAV68608.1|  cyclin-dependent kinases regulatory subunit [Ostreococcus tauri]
Length=77

 Score = 65.1 bits (157),  Expect = 7e-11
 Identities = 27/30 (90%), Positives = 29/30 (96%), Gaps = 0/30 (0%)
 Frame = +2

Query  11  RAIGVQQSRGWVHYAIHRPEPHIMLFRRPL  100
           R +GVQQSRGWVHYAIHRPEPHIML+RRPL
Sbjct  42  RGLGVQQSRGWVHYAIHRPEPHIMLYRRPL  71


>gi|116058759|emb|CAL54466.1|  cyclin-dependent kinases regulatory subunit (IC) [Ostreococcus 
tauri]
Length=167

 Score = 58.9 bits (141),  Expect = 5e-09
 Identities = 24/27 (88%), Positives = 26/27 (96%), Gaps = 0/27 (0%)
 Frame = +2

Query  11   RAIGVQQSRGWVHYAIHRPEPHIMLFR  91
            R +GVQQSRGWVHYAIHRPEPHIML+R
Sbjct  95   RGLGVQQSRGWVHYAIHRPEPHIMLYR  121


>gi|9757723|dbj|BAB08248.1|  unnamed protein product [Arabidopsis thaliana]
Length=238

 Score = 28.5 bits (62),  Expect = 7.5
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 0/30 (0%)
 Frame = -2

Query  103  VERPPEEHDVWFRAMNGIMDPTATLLYSNC  14
            VER  EE  +WFR   G  D    LL S C
Sbjct  51   VERENEEKALWFRGQFGNFDLVKCLLLSKC  80

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 216
Number of extensions: 5
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 407
Length of database: 101054579
Length adjustment: 100
Effective length of query: 307
Effective length of database: 72719679
Effective search space: 2545188765
Effective search space used: 2545188765
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)