RID=1168943582-2596-38169063179.BLASTQ4, Contig266

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168943582-2596-38169063179.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig266
Length=484

Distribution of 18 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|62131147|gb|AAX68525.1|  putative ethylene responsive eleme...   104    2e-22 
gi|55419648|gb|AAV51937.1|  AP2/EREBP transcription factor ERF-2   98.6    9e-21 
gi|56384257|gb|AAV85777.1|  EREB1 transcription factor [Gossypium  88.6    1e-17 
gi|59800345|gb|AAX07460.1|  ethylene-responsive element bindin...  68.9    8e-12 
gi|62131149|gb|AAX68526.1|  putative ethylene responsive eleme...  65.5    9e-11 
gi|119943475|dbj|BAF43419.1|  ethylene response factor [Malus x d  41.6    0.001
gi|15228312|ref|NP_188299.1|  ATEBP/RAP2.3; DNA binding / tran...  38.1    0.015 
gi|2467088|emb|CAA05084.1|  putative Ckc2 [Arabidopsis thaliana]   35.4    0.098 
gi|10798644|emb|CAC12822.1|  AP2 domain-containing transcription   32.7    0.64  
gi|108862922|gb|ABA99784.2|  retrotransposon protein, putative...  30.0    4.1  
gi|115469314|ref|NP_001058256.1|  Os06g0657500 [Oryza sativa (...  30.0    4.1   
gi|110288556|gb|AAP51910.2|  retrotransposon protein, putative...  29.6    5.4  
gi|115485915|ref|NP_001068101.1|  Os11g0559600 [Oryza sativa (...  29.6    5.4   
gi|38346466|emb|CAD39571.2|  OSJNBa0019G23.14 [Oryza sativa (j...  29.6    5.4   
gi|115486403|ref|NP_001068345.1|  Os11g0639600 [Oryza sativa (...  29.6    5.4   
gi|20042893|gb|AAM08721.1|AC116601_14  Putative copia-type pol...  29.6    5.4  
gi|51038174|gb|AAT93977.1|  hypothetical protein [Oryza sativa (j  29.3    7.0  
gi|41469537|gb|AAS07303.1|  putative GRAS family transcription...  28.9    9.2

Alignments

 

>gi|62131147|gb|AAX68525.1|  putative ethylene responsive element binding protein 2 [Gossypium 
hirsutum]
Length=256

 Score =  104 bits (259),  Expect = 2e-22
 Identities = 70/113 (61%), Positives = 79/113 (69%), Gaps = 7/113 (6%)
 Frame = +1

Query  4    TPAPIQPPAKKRRIDAPELSHASFETIGApxppxtpqpYMGFGYGNEVYRPSeaxettel  183
            TP   QPPAKKR + APEL+  S ET      P TPQ +MGFGY N VYRPSEA E+   
Sbjct  149  TPHLTQPPAKKRCMMAPELTPPSSET----KSPPTPQLFMGFGYENGVYRPSEAMESEME  204

Query  184  elkeQILSLESFPGLEPE--TPQPSGNGEPDSLDLWMLDDLVTHHQQQRQLVY  336
              + QI SLESF GLEP+  T + SG+ EPDS+DLWMLDDLVTHHQQQ QL Y
Sbjct  205  LKE-QISSLESFLGLEPDETTTELSGSAEPDSVDLWMLDDLVTHHQQQPQLFY  256


>gi|55419648|gb|AAV51937.1|  AP2/EREBP transcription factor ERF-2 [Gossypium hirsutum]
Length=255

 Score = 98.6 bits (244),  Expect = 9e-21
 Identities = 68/113 (60%), Positives = 79/113 (69%), Gaps = 7/113 (6%)
 Frame = +1

Query  4    TPAPIQPPAKKRRIDAPELSHASFETIGApxppxtpqpYMGFGYGNEVYRPSeaxettel  183
            TP   QPPAKKR + APEL+  S ET      P TPQP+MGFGY N VYRPSEA E+   
Sbjct  148  TPRLTQPPAKKRCMMAPELTPPSSET----KSPPTPQPFMGFGYENGVYRPSEAMESEME  203

Query  184  elkeQILSLESFPGLEPE--TPQPSGNGEPDSLDLWMLDDLVTHHQQQRQLVY  336
              + QI SLESF GLEP+  T + SG+ EP+S++LWMLD LVTHHQQQ QL Y
Sbjct  204  LKE-QISSLESFLGLEPDEMTTELSGSAEPESVNLWMLDHLVTHHQQQPQLFY  255


>gi|56384257|gb|AAV85777.1|  EREB1 transcription factor [Gossypium hirsutum]
Length=214

 Score = 88.6 bits (218),  Expect = 1e-17
 Identities = 65/115 (56%), Positives = 76/115 (66%), Gaps = 11/115 (9%)
 Frame = +1

Query  1    ATPAPIQPPAKKRRIDAPELSHASFETIGApxppxtpqpYMGFGYG-NEVYRPSeaxett  177
            A+PA IQ P  K+R   PEL+  SF+T   P P       MG G G +E Y+P      +
Sbjct  108  ASPALIQLPPAKKRCIVPELTQPSFQTDSPPYP-------MGLGSGRSEDYKP-IEVVES  159

Query  178  elelkeQILSLESFPGLEPE--TPQPSGNGEPDSLDLWMLDDLVTHHQQQRQLVY  336
            ELELKEQI SLESF GLEP+  T + SG+ EPDS+DLWMLDDLVTHHQQQ QL Y
Sbjct  160  ELELKEQIWSLESFLGLEPDETTTELSGSAEPDSVDLWMLDDLVTHHQQQPQLFY  214


>gi|59800345|gb|AAX07460.1|  ethylene-responsive element binding protein ERF6 [Gossypium hirsutum]
Length=262

 Score = 68.9 bits (167),  Expect = 8e-12
 Identities = 57/112 (50%), Positives = 68/112 (60%), Gaps = 12/112 (10%)
 Frame = +1

Query  1    ATPAPIQPPAKKRRIDAPELSHASFETIGApxppxtpqpYMGFGYG-NEVYRPSeaxett  177
            A+PA  Q P  K+R   PEL+  SF+T   P P       MG GYG +E Y+P      +
Sbjct  159  ASPALTQLPPAKKRCIVPELTQPSFQTDSPPYP-------MGLGYGRSEDYKP-IEVVES  210

Query  178  elelkeQILSLESFPGLEPE---TPQPSGNGEPDSLDLWMLDDLVTHHQQQR  324
            ELELKEQI SLESF GLE       Q SGNG  DSL+LW LDDLVT ++Q+R
Sbjct  211  ELELKEQIWSLESFLGLETNHETMTQLSGNGGTDSLELWTLDDLVTQYKQRR  262


>gi|62131149|gb|AAX68526.1|  putative ethylene responsive element binding protein 3 [Gossypium 
hirsutum]
Length=261

 Score = 65.5 bits (158),  Expect = 9e-11
 Identities = 56/112 (50%), Positives = 67/112 (59%), Gaps = 12/112 (10%)
 Frame = +1

Query  1    ATPAPIQPPAKKRRIDAPELSHASFETIGApxppxtpqpYMGFGYG-NEVYRPSeaxett  177
            A+PA  Q P  K+R   PEL+  SF+T   P P       MG G G +E Y+P      +
Sbjct  158  ASPALTQLPPAKKRCIVPELTQPSFQTDSPPYP-------MGLGSGRSEDYKP-IEVVES  209

Query  178  elelkeQILSLESFPGLEPE---TPQPSGNGEPDSLDLWMLDDLVTHHQQQR  324
            ELELKEQI SLESF GLE       Q SGNG  DSL+LW LDDLVT ++Q+R
Sbjct  210  ELELKEQIWSLESFLGLETNHETMTQLSGNGGTDSLELWTLDDLVTQYKQRR  261


>gi|119943475|dbj|BAF43419.1|  ethylene response factor [Malus x domestica]
Length=252

 Score = 41.6 bits (96),  Expect = 0.001
 Identities = 21/29 (72%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
 Frame = +1

Query  250  SGNGEPDSLDLWMLDDLVTHHQQQRQLVY  336
            SG+GE DSL LWMLDDLV  +QQQ QL+Y
Sbjct  225  SGSGESDSLYLWMLDDLVA-YQQQGQLLY  252


>gi|15228312|ref|NP_188299.1|  ATEBP/RAP2.3; DNA binding / transcription factor [Arabidopsis 
thaliana]
 gi|27735162|sp|P42736|AP23_ARATH  AP2 domain transcription factor RAP2.3 (Related to AP2 protein 
3) (Cadmium-induced protein AS30)
 gi|2281631|gb|AAC49769.1|  AP2 domain containing protein RAP2.3 [Arabidopsis thaliana]
 gi|11994632|dbj|BAB02769.1|  AP2 domain transcription factor RAP2.3 [Arabidopsis thaliana]
 gi|14334854|gb|AAK59605.1|  putative AP2 domain containing protein RAP2.3 [Arabidopsis thaliana]
 gi|16649095|gb|AAL24399.1|  AP2 domain transcription factor RAP2.3 [Arabidopsis thaliana]
 gi|21593082|gb|AAM65031.1|  AP2 domain containing protein RAP2.3 [Arabidopsis thaliana]
 gi|23296611|gb|AAN13131.1|  putative AP2 domain containing protein RAP2.3 [Arabidopsis thaliana]
Length=248

 Score = 38.1 bits (87),  Expect = 0.015
 Identities = 38/104 (36%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
 Frame = +1

Query  19   QPPAKKRRI---DAPELSHASFETIGApxppxtpqpYMGFGYGNEVYRPSeaxettelel  189
            QPPAKK  +      ELS  SF               +GFG G+E    S   E      
Sbjct  157  QPPAKKVCVVSQSESELSQPSFPV-----------ECIGFGNGDEFQNLSYGFEPDYDLK  205

Query  190  keQILSLESFPGLEPETP-QPSGNGEPDS-LDLWMLDDLVTHHQ  315
            + QI SLESF  L+  T  QPS   E  S +D+WMLDD++  ++
Sbjct  206  Q-QISSLESFLELDGNTAEQPSQLDESVSEVDMWMLDDVIASYE  248


>gi|2467088|emb|CAA05084.1|  putative Ckc2 [Arabidopsis thaliana]
Length=246

 Score = 35.4 bits (80),  Expect = 0.098
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
 Frame = +1

Query  19   QPPAKKRRI-DAPELSHASFETIGApxppxtpqpYMGFGYGNEVYRPSeaxettelelke  195
            QPPAKK  +    EL+  SF               +GFG G E ++        + +LK+
Sbjct  157  QPPAKKVCVVSQSELAQPSFPV-----------ECVGFGKGEE-FQNLMYGFEPDYDLKQ  204

Query  196  QILSLESFPGLEPETP-QPSGNGEPD-SLDLWMLDDLVTHHQ  315
            QI SLESF  L+  T  QPS   E    +D+WMLDD++  ++
Sbjct  205  QISSLESFLELDGTTAEQPSQLDESVCDVDMWMLDDVIASYE  246


>gi|10798644|emb|CAC12822.1|  AP2 domain-containing transcription factor [Nicotiana tabacum]
Length=226

 Score = 32.7 bits (73),  Expect = 0.64
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
 Frame = +1

Query  196  QILSLESFPGLEPETPQPSGNGEPDSLDLWMLDDLVTHHQQQ  321
            QI +LESF  LEP+    SG  + D L+++++DD     QQQ
Sbjct  186  QISNLESFLDLEPD----SGIVDSDPLNIFLMDDFAATQQQQ  223


>gi|108862922|gb|ABA99784.2|  retrotransposon protein, putative, unclassified [Oryza sativa 
(japonica cultivar-group)]
Length=969

 Score = 30.0 bits (66),  Expect = 4.1
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
 Frame = -1

Query  334  KQAGAVADDESRGHQASRGPVSQAPRFHSAEGSQAPT----------QGTIPGSRFALSA  185
            +QA   A +E+R HQA     S+A R  +A  S  PT           G IP S  ++  
Sbjct  438  RQAEEAAREEARLHQAEATTTSEATRGEAAGASLGPTPSCDAQDKPGPGDIPESGTSIGG  497

Query  184  PTQSS  170
            P++++
Sbjct  498  PSRAA  502


>gi|115469314|ref|NP_001058256.1|  Os06g0657500 [Oryza sativa (japonica cultivar-group)]
 gi|51535133|dbj|BAD37823.1|  aintegumenta-like protein [Oryza sativa (japonica cultivar-group)]
 gi|113596296|dbj|BAF20170.1|  Os06g0657500 [Oryza sativa (japonica cultivar-group)]
Length=469

 Score = 30.0 bits (66),  Expect = 4.1
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query  217  FPGLEPETPQPSGNGEPDSLDLWMLDDLVTHHQQQRQ  327
            FP  +P  P PS    P   D W L  L  HH QQ+Q
Sbjct  317  FPS-DPSLPLPSPAMPPSEKDYWSLLALHYHHHQQQQ  352


>gi|110288556|gb|AAP51910.2|  retrotransposon protein, putative, Ty1-copia subclass [Oryza 
sativa (japonica cultivar-group)]
Length=1012

 Score = 29.6 bits (65),  Expect = 5.4
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 0/27 (0%)
 Frame = +1

Query  256  NGEPDSLDLWMLDDLVTHHQQQRQLVY  336
            +G+PD  DLW LD  VT+H    + V+
Sbjct  386  DGDPDPADLWYLDTGVTNHMTGARSVF  412


>gi|115485915|ref|NP_001068101.1|  Os11g0559600 [Oryza sativa (japonica cultivar-group)]
 gi|108864505|gb|ABA94308.2|  expressed protein [Oryza sativa (japonica cultivar-group)]
 gi|113645323|dbj|BAF28464.1|  Os11g0559600 [Oryza sativa (japonica cultivar-group)]
Length=144

 Score = 29.6 bits (65),  Expect = 5.4
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 0/36 (0%)
 Frame = -1

Query  259  RFHSAEGSQAPTQGTIPGSRFALSAPTQSSPLLHSA  152
            R HS+   ++P    +PG+R   S  + ++PLLH A
Sbjct  92   RPHSSRSRRSPVGAPLPGARTPSSCRSATTPLLHRA  127


>gi|38346466|emb|CAD39571.2|  OSJNBa0019G23.14 [Oryza sativa (japonica cultivar-group)]
 gi|38567958|emb|CAE75911.1|  OSJNBb0115I21.14 [Oryza sativa (japonica cultivar-group)]
Length=1041

 Score = 29.6 bits (65),  Expect = 5.4
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
 Frame = -1

Query  334  KQAGAVADDESRGHQASRGPVSQAPRFHSAEGSQAPT----------QGTIPGSRFALSA  185
            +QA   A +E+R HQA     S+A R  +A  S  PT           G +P S  ++  
Sbjct  500  RQAEEAAREEARLHQAEATTTSEAARDEAAGASLGPTPSGDAQDKPGPGDVPESGTSIGG  559

Query  184  PTQSS  170
            P++++
Sbjct  560  PSRAA  564


>gi|115486403|ref|NP_001068345.1|  Os11g0639600 [Oryza sativa (japonica cultivar-group)]
 gi|77552178|gb|ABA94975.1|  NB-ARC domain containing protein, expressed [Oryza sativa (japonica 
cultivar-group)]
 gi|113645567|dbj|BAF28708.1|  Os11g0639600 [Oryza sativa (japonica cultivar-group)]
Length=935

 Score = 29.6 bits (65),  Expect = 5.4
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -2

Query  171  LXCFTRPVNFVPVPETHVRLWRXRGXWCANGFKTRMTQLRGVDAPFLSRRLDWG  10
            L C T P  F+ +PE+ VRLW   G     G      Q+  +   ++   + WG
Sbjct  474  LYCSTFPAGFLLLPESLVRLWAAEGFIENQG----SLQVEEIGERYIKELIHWG  523


>gi|20042893|gb|AAM08721.1|AC116601_14  Putative copia-type pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length=1018

 Score = 29.6 bits (65),  Expect = 5.4
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 0/27 (0%)
 Frame = +1

Query  256  NGEPDSLDLWMLDDLVTHHQQQRQLVY  336
            +G+PD  DLW LD  VT+H    + V+
Sbjct  392  DGDPDPADLWYLDTGVTNHMTGARSVF  418


>gi|51038174|gb|AAT93977.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=372

 Score = 29.3 bits (64),  Expect = 7.0
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 0/73 (0%)
 Frame = -1

Query  250  SAEGSQAPTQGTIPGSRFALSAPTQSSPLLHSACKLRSRTRNPCTVVALXGVXVRQWFQN  71
            S  GS AP +GT+   RF  +AP +   +  +     +R+R   T         R+   +
Sbjct  39   SPNGSAAPKRGTVAVPRFQYAAPGRERAVPRNREARSARSRALATRDRHGPAQRRRGTVS  98

Query  70   SHDSAQGRRCAFS  32
                A+GRRC  S
Sbjct  99   GRVGARGRRCRTS  111


>gi|41469537|gb|AAS07303.1|  putative GRAS family transcription factor [Oryza sativa (japonica 
cultivar-group)]
 gi|108708985|gb|ABF96780.1|  GRAS family transcription factor containing protein, expressed 
[Oryza sativa (japonica cultivar-group)]
Length=603

 Score = 28.9 bits (63),  Expect = 9.2
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 15/111 (13%)
 Frame = -1

Query  469  HSMSMYHNSHGTPIENPNEHINMMINANYFY*SVFLGLFKFV*SNKQAGAVADDE-SRGH  293
            H+ + YH+SH         H N   N NY+Y     G   +  + +Q  A   +E   GH
Sbjct  48   HNHTYYHHSHS--------HYNNNSNTNYYYQGGGGGGGGYYYAEEQQPAAYLEECGNGH  99

Query  292  Q----ASRGPVSQAPRFHSAEGSQAPTQGTIPGSRFALSAPTQSSPLLHSA  152
            Q          S + +FHS  G+ AP+   +P    A ++      L  +A
Sbjct  100  QFYMDEDFSSSSSSRQFHS--GTGAPSSAPVPPPPSATTSSAGGHGLFEAA  148

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 255
Number of extensions: 3
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 484
Length of database: 101054579
Length adjustment: 104
Effective length of query: 380
Effective length of database: 71586283
Effective search space: 4080418131
Effective search space used: 4080418131
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 63 (28.9 bits)