RID=1168943721-32607-121843131809.BLASTQ1, Contig272

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168943721-32607-121843131809.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig272
Length=512

Distribution of 20 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|92885701|gb|ABE87889.1|  RNA-binding region RNP-1 (RNA reco...   199    4e-51
gi|15231193|ref|NP_190149.1|  RNA binding / nucleic acid bindi...   138    1e-32 
gi|110737331|dbj|BAF00611.1|  hypothetical protein [Arabidopsis t   135    1e-31
gi|15238634|ref|NP_200825.1|  RNA binding / nucleic acid binding    135    1e-31 
gi|8885568|dbj|BAA97498.1|  general negative transcription reg...   135    1e-31
gi|115486860|ref|NP_001065236.1|  Os12g0102400 [Oryza sativa (...   100    4e-21 
gi|108862067|gb|ABG21844.1|  RNA recognition motif family prot...   100    4e-21
gi|115483715|ref|NP_001065519.1|  Os11g0102800 [Oryza sativa (...  99.8    5e-21 
gi|77548311|gb|ABA91108.1|  expressed protein [Oryza sativa (japo  99.8    5e-21
gi|67633552|gb|AAY78700.1|  hypothetical protein At2g28540 [Arabi  58.2    2e-08 
gi|110737440|dbj|BAF00664.1|  hypothetical protein [Arabidopsis t  57.8    2e-08
gi|79323374|ref|NP_001031437.1|  unknown protein [Arabidopsis ...  57.8    2e-08 
gi|4510407|gb|AAD21494.1|  unknown protein [Arabidopsis thaliana]  57.8    2e-08
gi|82749742|gb|ABB89755.1|  putative dehydration-responsive el...  32.3    0.95 
gi|115464347|ref|NP_001055773.1|  Os05g0463700 [Oryza sativa (...  28.1    2.4   
gi|15231865|ref|NP_190939.1|  DNA binding [Arabidopsis thalian...  30.0    4.7   
gi|10441356|gb|AAG17006.1|AF184146_1  ARF GAP-like zinc finger...  30.0    4.7   
gi|108707871|gb|ABF95666.1|  retrotransposon protein, putative...  29.6    6.1  
gi|7767675|gb|AAF69172.1|AC007915_24  F27F5.11 [Arabidopsis thali  29.3    8.0

Alignments

 

>gi|92885701|gb|ABE87889.1|  RNA-binding region RNP-1 (RNA recognition motif); Aldehyde dehydrogenase 
[Medicago truncatula]
Length=1200

 Score =  199 bits (506),  Expect = 4e-51
 Identities = 95/137 (69%), Positives = 117/137 (85%), Gaps = 2/137 (1%)
 Frame = +3

Query  9     DMRSNFPPQLGPYENEARFQLLMQRSLSPHQNLRY-DVGDSFSSLSDSYGISSRLIDQSQ  185
             D+RSNF PQL  ++NEAR QLLMQRSL+  QNLR+ ++G++FS L DSYG+SSRL DQSQ
Sbjct  908   DVRSNFMPQLNYFDNEARLQLLMQRSLAQQQNLRFSEIGNTFSQLGDSYGVSSRL-DQSQ  966

Query  186   VNNMSPFAQLSLQQSRNAHMSNGHWDGWNEVQGGNSLGVAELLRNDRLGYNKFYSSYEGS  365
             V+N++P+ QLS+QQS NA +SNG W+GWNEVQ GN LGVAELLRN+RLG+NKFY  Y+ S
Sbjct  967   VSNLAPYPQLSMQQSTNAILSNGQWNGWNEVQSGNGLGVAELLRNERLGFNKFYPGYDDS  1026

Query  366   KYRMPTSGDLYNRTFGM  416
             KYRMP SGD+YNRTFG+
Sbjct  1027  KYRMPNSGDIYNRTFGI  1043


>gi|15231193|ref|NP_190149.1|  RNA binding / nucleic acid binding / ubiquitin-protein ligase/ 
zinc ion binding [Arabidopsis thaliana]
 gi|6996266|emb|CAB75492.1|  putative protein [Arabidopsis thaliana]
Length=989

 Score =  138 bits (347),  Expect = 1e-32
 Identities = 73/142 (51%), Positives = 94/142 (66%), Gaps = 6/142 (4%)
 Frame = +3

Query  9    DMRSNFPPQLGPYENEARFQLLMQRSLSPHQNLRY----DVGDSFSSLSDSYGISSRLID  176
            D+RS F  QL  ++N+AR QLL QRSL+  Q   +    +V +  SS SD YGISSR  D
Sbjct  848  DLRSGFSSQLNSFDNDARLQLLAQRSLAAQQVNGFHDPRNVNNFSSSFSDPYGISSRPTD  907

Query  177  QSQVNNMSPFAQLSLQQSRNAHMSNGHWDG-WNEVQGGNSLGVAELLRNDRLGYN-KFYS  350
            Q+Q   +SPF QL  Q S N  +SNGHWD  WNE Q GN+LG+ +LLRN+R+G+N   YS
Sbjct  908  QTQGTGLSPFTQLPRQASANPLLSNGHWDNKWNEPQSGNNLGITQLLRNERMGFNDNVYS  967

Query  351  SYEGSKYRMPTSGDLYNRTFGM  416
             +E  K+R P  GD YNRT+G+
Sbjct  968  GFEEPKFRRPGPGDPYNRTYGI  989


>gi|110737331|dbj|BAF00611.1|  hypothetical protein [Arabidopsis thaliana]
Length=1025

 Score =  135 bits (339),  Expect = 1e-31
 Identities = 72/143 (50%), Positives = 101/143 (70%), Gaps = 7/143 (4%)
 Frame = +3

Query  9     DMRSNFPPQLGPYENEARFQLLMQRSLSPHQNLR---YDVGDSFSSLSDSYGISSRLIDQ  179
             DMRS F  QL  +ENE    +L Q+SLS  Q +    +D+ +   SL+D YG SSRL+DQ
Sbjct  883   DMRSGFSSQLNSFENETGLHMLRQQSLSSAQQVNGFHHDLRNLSPSLNDPYGFSSRLMDQ  942

Query  180   SQVNNMSPFAQLSLQQ-SRNAHMSNGH-WDGWNEVQGGNSLGVAELLRNDRLGYN--KFY  347
             +Q +++SPF+QL  QQ S N+ +SNGH WD WNE Q  N++G+AELLRN+RLG+N   + 
Sbjct  943   TQGSSLSPFSQLPRQQPSANSILSNGHHWDKWNEGQSVNNIGMAELLRNERLGFNGSLYN  1002

Query  348   SSYEGSKYRMPTSGDLYNRTFGM  416
             + YE  K+R+P+ GD+YNRT+G+
Sbjct  1003  NGYEEPKFRIPSPGDVYNRTYGI  1025


>gi|15238634|ref|NP_200825.1|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
Length=944

 Score =  135 bits (339),  Expect = 1e-31
 Identities = 72/143 (50%), Positives = 101/143 (70%), Gaps = 7/143 (4%)
 Frame = +3

Query  9    DMRSNFPPQLGPYENEARFQLLMQRSLSPHQNLR---YDVGDSFSSLSDSYGISSRLIDQ  179
            DMRS F  QL  +ENE    +L Q+SLS  Q +    +D+ +   SL+D YG SSRL+DQ
Sbjct  802  DMRSGFSSQLNSFENETGLHMLRQQSLSSAQQVNGFHHDLRNLSPSLNDPYGFSSRLMDQ  861

Query  180  SQVNNMSPFAQLSLQQ-SRNAHMSNGH-WDGWNEVQGGNSLGVAELLRNDRLGYN--KFY  347
            +Q +++SPF+QL  QQ S N+ +SNGH WD WNE Q  N++G+AELLRN+RLG+N   + 
Sbjct  862  TQGSSLSPFSQLPRQQPSANSILSNGHHWDKWNEGQSVNNIGMAELLRNERLGFNGSLYN  921

Query  348  SSYEGSKYRMPTSGDLYNRTFGM  416
            + YE  K+R+P+ GD+YNRT+G+
Sbjct  922  NGYEEPKFRIPSPGDVYNRTYGI  944


>gi|8885568|dbj|BAA97498.1|  general negative transcription regulator-like [Arabidopsis thaliana]
Length=989

 Score =  135 bits (339),  Expect = 1e-31
 Identities = 72/143 (50%), Positives = 101/143 (70%), Gaps = 7/143 (4%)
 Frame = +3

Query  9    DMRSNFPPQLGPYENEARFQLLMQRSLSPHQNLR---YDVGDSFSSLSDSYGISSRLIDQ  179
            DMRS F  QL  +ENE    +L Q+SLS  Q +    +D+ +   SL+D YG SSRL+DQ
Sbjct  847  DMRSGFSSQLNSFENETGLHMLRQQSLSSAQQVNGFHHDLRNLSPSLNDPYGFSSRLMDQ  906

Query  180  SQVNNMSPFAQLSLQQ-SRNAHMSNGH-WDGWNEVQGGNSLGVAELLRNDRLGYN--KFY  347
            +Q +++SPF+QL  QQ S N+ +SNGH WD WNE Q  N++G+AELLRN+RLG+N   + 
Sbjct  907  TQGSSLSPFSQLPRQQPSANSILSNGHHWDKWNEGQSVNNIGMAELLRNERLGFNGSLYN  966

Query  348  SSYEGSKYRMPTSGDLYNRTFGM  416
            + YE  K+R+P+ GD+YNRT+G+
Sbjct  967  NGYEEPKFRIPSPGDVYNRTYGI  989


>gi|115486860|ref|NP_001065236.1|  Os12g0102400 [Oryza sativa (japonica cultivar-group)]
 gi|108862066|gb|ABA95577.2|  RNA recognition motif family protein, expressed [Oryza sativa 
(japonica cultivar-group)]
 gi|113648424|dbj|BAF28936.1|  Os12g0102400 [Oryza sativa (japonica cultivar-group)]
Length=1097

 Score =  100 bits (248),  Expect = 4e-21
 Identities = 54/133 (40%), Positives = 88/133 (66%), Gaps = 13/133 (9%)
 Frame = +3

Query  24    FPPQLGPYENEARFQLLMQRSLSPHQNLRY--DVGDSFSSLSDSYGISSRLIDQSQVNNM  197
             FP QL    N+ RFQLLMQ+++  HQN+ +   V D+F+ ++D+Y ++SRLI Q+   ++
Sbjct  976   FPSQLQT-SNDPRFQLLMQQNMPSHQNVGFAEHVQDAFNPMNDNY-LASRLIPQNH-GSL  1032

Query  198   SPFAQLSLQQSRNAHMSNGHWDGWNEVQGGNSLGVAELLRNDRLGYNKFYSSYEGSKYRM  377
             S + Q+SLQQ R++H++NGHWDGW +++ GN++ + ++ R         Y + E + + M
Sbjct  1033  SSYTQMSLQQPRSSHLTNGHWDGWGDLRQGNNVSMPDMSR-------MLYPT-EANNFHM  1084

Query  378   PTSGDLYNRTFGM  416
               S DLYNR FG+
Sbjct  1085  LGSNDLYNRAFGL  1097


>gi|108862067|gb|ABG21844.1|  RNA recognition motif family protein, expressed [Oryza sativa 
(japonica cultivar-group)]
Length=1096

 Score =  100 bits (248),  Expect = 4e-21
 Identities = 54/133 (40%), Positives = 88/133 (66%), Gaps = 13/133 (9%)
 Frame = +3

Query  24    FPPQLGPYENEARFQLLMQRSLSPHQNLRY--DVGDSFSSLSDSYGISSRLIDQSQVNNM  197
             FP QL    N+ RFQLLMQ+++  HQN+ +   V D+F+ ++D+Y ++SRLI Q+   ++
Sbjct  975   FPSQLQT-SNDPRFQLLMQQNMPSHQNVGFAEHVQDAFNPMNDNY-LASRLIPQNH-GSL  1031

Query  198   SPFAQLSLQQSRNAHMSNGHWDGWNEVQGGNSLGVAELLRNDRLGYNKFYSSYEGSKYRM  377
             S + Q+SLQQ R++H++NGHWDGW +++ GN++ + ++ R         Y + E + + M
Sbjct  1032  SSYTQMSLQQPRSSHLTNGHWDGWGDLRQGNNVSMPDMSR-------MLYPT-EANNFHM  1083

Query  378   PTSGDLYNRTFGM  416
               S DLYNR FG+
Sbjct  1084  LGSNDLYNRAFGL  1096


>gi|115483715|ref|NP_001065519.1|  Os11g0102800 [Oryza sativa (japonica cultivar-group)]
 gi|32352146|dbj|BAC78566.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
 gi|113644223|dbj|BAF27364.1|  Os11g0102800 [Oryza sativa (japonica cultivar-group)]
Length=270

 Score = 99.8 bits (247),  Expect = 5e-21
 Identities = 54/133 (40%), Positives = 88/133 (66%), Gaps = 13/133 (9%)
 Frame = +3

Query  24   FPPQLGPYENEARFQLLMQRSLSPHQNLRY--DVGDSFSSLSDSYGISSRLIDQSQVNNM  197
            FP QL    N+ RFQLLMQ+++  HQN+ +   V D+F+ ++D+Y ++SRLI Q+   ++
Sbjct  149  FPSQLQT-SNDPRFQLLMQQNVPSHQNVGFAEHVQDAFNPMNDNY-LASRLIPQNH-GSL  205

Query  198  SPFAQLSLQQSRNAHMSNGHWDGWNEVQGGNSLGVAELLRNDRLGYNKFYSSYEGSKYRM  377
            S + Q+SLQQ R++H++NGHWDGW +++ GN++ + ++ R         Y + E + + M
Sbjct  206  SSYTQMSLQQPRSSHLTNGHWDGWGDLRQGNNVSMPDMSR-------MLYPT-EANNFHM  257

Query  378  PTSGDLYNRTFGM  416
              S DLYNR FG+
Sbjct  258  LGSNDLYNRAFGL  270


>gi|77548311|gb|ABA91108.1|  expressed protein [Oryza sativa (japonica cultivar-group)]
Length=1166

 Score = 99.8 bits (247),  Expect = 5e-21
 Identities = 54/133 (40%), Positives = 88/133 (66%), Gaps = 13/133 (9%)
 Frame = +3

Query  24    FPPQLGPYENEARFQLLMQRSLSPHQNLRY--DVGDSFSSLSDSYGISSRLIDQSQVNNM  197
             FP QL    N+ RFQLLMQ+++  HQN+ +   V D+F+ ++D+Y ++SRLI Q+   ++
Sbjct  1045  FPSQLQT-SNDPRFQLLMQQNVPSHQNVGFAEHVQDAFNPMNDNY-LASRLIPQNH-GSL  1101

Query  198   SPFAQLSLQQSRNAHMSNGHWDGWNEVQGGNSLGVAELLRNDRLGYNKFYSSYEGSKYRM  377
             S + Q+SLQQ R++H++NGHWDGW +++ GN++ + ++ R         Y + E + + M
Sbjct  1102  SSYTQMSLQQPRSSHLTNGHWDGWGDLRQGNNVSMPDMSR-------MLYPT-EANNFHM  1153

Query  378   PTSGDLYNRTFGM  416
               S DLYNR FG+
Sbjct  1154  LGSNDLYNRAFGL  1166


>gi|67633552|gb|AAY78700.1|  hypothetical protein At2g28540 [Arabidopsis thaliana]
Length=539

 Score = 58.2 bits (139),  Expect = 2e-08
 Identities = 48/137 (35%), Positives = 64/137 (46%), Gaps = 39/137 (28%)
 Frame = +3

Query  9    DMRSNFPPQLGPYENEARFQ-----------LLMQRSLSPHQNLRYDVGDSFSSLSDSYG  155
            D RSNF      Y + A+ Q           L MQ  LS HQN R+         +DS G
Sbjct  428  DFRSNFQGNTNMYGSAAKLQQQQQQAVMQNPLSMQNPLSSHQNFRF---------TDSLG  478

Query  156  ISSRLIDQSQVNNMSPFAQLSLQQSRNAHMSNGHWDGW--NEVQGGNSLGVAELLRNDRL  329
            ++ R IDQSQ NN+          +RN  + NGHW+G   NE+Q  N       L+N+RL
Sbjct  479  MAPRFIDQSQGNNL---------LTRNMALPNGHWNGLMSNEIQTRNR------LQNERL  523

Query  330  -GYNKFYSSYEGSKYRM  377
             G   +   Y G+ +RM
Sbjct  524  VGSTNWIPGYNGT-FRM  539


>gi|110737440|dbj|BAF00664.1|  hypothetical protein [Arabidopsis thaliana]
Length=960

 Score = 57.8 bits (138),  Expect = 2e-08
 Identities = 48/137 (35%), Positives = 64/137 (46%), Gaps = 39/137 (28%)
 Frame = +3

Query  9    DMRSNFPPQLGPYENEARFQ-----------LLMQRSLSPHQNLRYDVGDSFSSLSDSYG  155
            D RSNF      Y + A+ Q           L MQ  LS HQN R+         +DS G
Sbjct  849  DFRSNFQGNTNMYGSAAKLQQQQQQAVMQNPLSMQNPLSSHQNCRF---------TDSLG  899

Query  156  ISSRLIDQSQVNNMSPFAQLSLQQSRNAHMSNGHWDGW--NEVQGGNSLGVAELLRNDRL  329
            ++ R IDQSQ NN+          +RN  + NGHW+G   NE+Q  N       L+N+RL
Sbjct  900  MAPRFIDQSQGNNL---------LTRNMALPNGHWNGLMSNEIQTRNR------LQNERL  944

Query  330  -GYNKFYSSYEGSKYRM  377
             G   +   Y G+ +RM
Sbjct  945  VGSTNWIPGYNGT-FRM  960


>gi|79323374|ref|NP_001031437.1|  unknown protein [Arabidopsis thaliana]
 gi|41059773|gb|AAR99361.1|  hypothetical protein At2g28540 [Arabidopsis thaliana]
Length=539

 Score = 57.8 bits (138),  Expect = 2e-08
 Identities = 48/137 (35%), Positives = 64/137 (46%), Gaps = 39/137 (28%)
 Frame = +3

Query  9    DMRSNFPPQLGPYENEARFQ-----------LLMQRSLSPHQNLRYDVGDSFSSLSDSYG  155
            D RSNF      Y + A+ Q           L MQ  LS HQN R+         +DS G
Sbjct  428  DFRSNFQGNTNMYGSAAKLQQQQQQAVMQNPLSMQNPLSSHQNCRF---------TDSLG  478

Query  156  ISSRLIDQSQVNNMSPFAQLSLQQSRNAHMSNGHWDGW--NEVQGGNSLGVAELLRNDRL  329
            ++ R IDQSQ NN+          +RN  + NGHW+G   NE+Q  N       L+N+RL
Sbjct  479  MAPRFIDQSQGNNL---------LTRNMALPNGHWNGLMSNEIQTRNR------LQNERL  523

Query  330  -GYNKFYSSYEGSKYRM  377
             G   +   Y G+ +RM
Sbjct  524  VGSTNWIPGYNGT-FRM  539


>gi|4510407|gb|AAD21494.1|  unknown protein [Arabidopsis thaliana]
Length=652

 Score = 57.8 bits (138),  Expect = 2e-08
 Identities = 48/137 (35%), Positives = 64/137 (46%), Gaps = 39/137 (28%)
 Frame = +3

Query  9    DMRSNFPPQLGPYENEARFQ-----------LLMQRSLSPHQNLRYDVGDSFSSLSDSYG  155
            D RSNF      Y + A+ Q           L MQ  LS HQN R+         +DS G
Sbjct  541  DFRSNFQGNTNMYGSAAKLQQQQQQAVMQNPLSMQNPLSSHQNCRF---------TDSLG  591

Query  156  ISSRLIDQSQVNNMSPFAQLSLQQSRNAHMSNGHWDGW--NEVQGGNSLGVAELLRNDRL  329
            ++ R IDQSQ NN+          +RN  + NGHW+G   NE+Q  N       L+N+RL
Sbjct  592  MAPRFIDQSQGNNL---------LTRNMALPNGHWNGLMSNEIQTRNR------LQNERL  636

Query  330  -GYNKFYSSYEGSKYRM  377
             G   +   Y G+ +RM
Sbjct  637  VGSTNWIPGYNGT-FRM  652


>gi|82749742|gb|ABB89755.1|  putative dehydration-responsive element binding protein [Broussonetia 
papyrifera]
Length=330

 Score = 32.3 bits (72),  Expect = 0.95
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = +3

Query  126  SFSSLSDSYGISSRLIDQSQVNNMSPFAQLSLQQSRNAHMSNGHWDG  266
            S SSLS S  +SS L D+S   + SP + ++L        S+ HWDG
Sbjct  270  SSSSLSLSLSLSSPLSDESSAGSSSPESDVTL-----LDFSDSHWDG  311


>gi|115464347|ref|NP_001055773.1|  Os05g0463700 [Oryza sativa (japonica cultivar-group)]
 gi|113579324|dbj|BAF17687.1|  Os05g0463700 [Oryza sativa (japonica cultivar-group)]
Length=275

 Score = 28.1 bits (61),  Expect(2) = 2.4
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 18/79 (22%)
 Frame = +1

Query  196  CPHLHSCLFNSQGMHTCQMVIGMDGMRFRVETVSVWQSSSEMIDWDITSFIPVMKVQSTG  375
            CP  HS LFN   ++    +IG            +W  +S ++ W I   + +       
Sbjct  94   CPSFHSWLFNGGFLY---RIIGFG--------FHIWLFNSHILYWIIGCGVLI-------  135

Query  376  CPLRGICITEHSGCGFCLW  432
            C  R   +    GCGF +W
Sbjct  136  CLFRDDFLYRIIGCGFLIW  154


 Score = 21.6 bits (44),  Expect(2) = 2.4
 Identities = 6/14 (42%), Positives = 9/14 (64%), Gaps = 0/14 (0%)
 Frame = +1

Query  412  GCGFCLWESSCCLI  453
            GCGF +W   C ++
Sbjct  184  GCGFLIWLFDCGIL  197


>gi|15231865|ref|NP_190939.1|  DNA binding [Arabidopsis thaliana]
 gi|79314905|ref|NP_001030854.1|  DNA binding [Arabidopsis thaliana]
 gi|7629991|emb|CAB88333.1|  putative protein [Arabidopsis thaliana]
Length=459

 Score = 30.0 bits (66),  Expect = 4.7
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
 Frame = +3

Query  183  QVNNMSPFAQLSLQQSRNAHMSNGHWDGWNEVQGGNSLGVAELLRNDRLGYNKFYSSYEG  362
            + N   P AQ     + N +  NG WD W+      S    ++ RN      +   + EG
Sbjct  128  EANKKPPLAQGGYGNNNNNN--NGGWDSWDNDDSYKS----DMRRNQSANDFRASGNREG  181

Query  363  SKYRMPTSGDLYNRT  407
            +  +  +S D+Y R+
Sbjct  182  AHVKSKSSEDIYTRS  196


>gi|10441356|gb|AAG17006.1|AF184146_1  ARF GAP-like zinc finger-containing protein ZIGA2 [Arabidopsis 
thaliana]
Length=458

 Score = 30.0 bits (66),  Expect = 4.7
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
 Frame = +3

Query  183  QVNNMSPFAQLSLQQSRNAHMSNGHWDGWNEVQGGNSLGVAELLRNDRLGYNKFYSSYEG  362
            + N   P AQ     + N +  NG WD W+      S    ++ RN      +   + EG
Sbjct  128  EANKKPPLAQGGYGNNNNNN--NGGWDSWDNDDSYKS----DMRRNQSANDFRASGNREG  181

Query  363  SKYRMPTSGDLYNRT  407
            +  +  +S D+Y R+
Sbjct  182  AHVKSKSSEDIYTRS  196


>gi|108707871|gb|ABF95666.1|  retrotransposon protein, putative, Ty1-copia subclass, expressed 
[Oryza sativa (japonica cultivar-group)]
Length=976

 Score = 29.6 bits (65),  Expect = 6.1
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +1

Query  283  VETVSVWQSSSEMIDWDITSFIPVMKVQSTGCPLR---GICITEHSGCGFCLWESSCCL  450
            V+ + +  SSS ++ W ITS      ++  G PL    GI +T HSG G  L +   CL
Sbjct  656  VDDIVLTASSSNILRWTITSLQKEFSMKDLG-PLNHFLGINVTPHSG-GLLLTQRQYCL  712


>gi|7767675|gb|AAF69172.1|AC007915_24  F27F5.11 [Arabidopsis thaliana]
Length=1313

 Score = 29.3 bits (64),  Expect = 8.0
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +3

Query  117  VGDSFSSLSDSYGISSRLIDQSQVNNMSPFAQLSLQQSRNAHMSNGHWDGWNEVQGGN  290
            +G++FSS S S GI+    DQS    +    QLS   ++N  + +  W G    + GN
Sbjct  774  IGNNFSSSSHSPGIAEETSDQSTERILD---QLSTTTTQNETLKDPGWTGAMGEEMGN  828

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 338
Number of extensions: 8
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 512
Length of database: 101054579
Length adjustment: 105
Effective length of query: 407
Effective length of database: 71302934
Effective search space: 4634690710
Effective search space used: 4634690710
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 63 (28.9 bits)