RID=1168943781-16920-81869445275.BLASTQ4, Contig275

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168943781-16920-81869445275.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig275
Length=511

Distribution of 14 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|15242926|ref|NP_200611.1|  unknown protein [Arabidopsis tha...   226    9e-66 
gi|115439497|ref|NP_001044028.1|  Os01g0708600 [Oryza sativa (...   227    3e-65 
gi|4959712|gb|AAD34459.1|AF136010_1  SPP30 [Solanum chacoense]      226    6e-65
gi|116059274|emb|CAL54981.1|  Transport protein particle (TRAP...  97.1    2e-24
gi|116309580|emb|CAH66639.1|  OSIGBa0140A01.7 [Oryza sativa (indi  30.8    2.8  
gi|115457942|ref|NP_001052571.1|  Os04g0372800 [Oryza sativa (...  30.8    2.8   
gi|8778784|gb|AAF79792.1|AC020646_15  T32E20.31 [Arabidopsis thal  29.6    6.1  
gi|15221231|ref|NP_174889.1|  unknown protein [Arabidopsis thalia  29.6    6.1   
gi|110288900|gb|ABB47192.2|  retrotransposon protein, putative...  29.3    8.0  
gi|92877081|gb|ABE84301.1|  DIRP; Cytochrome c region [Medicago t  29.3    8.0

Alignments

 

>gi|15242926|ref|NP_200611.1|  unknown protein [Arabidopsis thaliana]
 gi|9759528|dbj|BAB10994.1|  unnamed protein product [Arabidopsis thaliana]
 gi|21555061|gb|AAM63766.1|  SPP30-like protein [Arabidopsis thaliana]
 gi|28466921|gb|AAO44069.1|  At5g58030 [Arabidopsis thaliana]
 gi|110735663|dbj|BAE99812.1|  SPP30 - like protein [Arabidopsis thaliana]
Length=195

 Score =  226 bits (577),  Expect(2) = 9e-66
 Identities = 113/118 (95%), Positives = 118/118 (100%), Gaps = 0/118 (0%)
 Frame = +1

Query  88   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY  267
            MIGVGK+KQYSNVLDKPLSKGKQEVSL+AFAFLFSELVQYNQTQVDNIAELERRLEDAGY
Sbjct  1    MIGVGKMKQYSNVLDKPLSKGKQEVSLTAFAFLFSELVQYNQTQVDNIAELERRLEDAGY  60

Query  268  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMI  441
            AVG+RVLELLC+R+KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMI
Sbjct  61   AVGSRVLELLCNREKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMI  118


 Score = 43.5 bits (101),  Expect(2) = 9e-66
 Identities = 20/23 (86%), Positives = 21/23 (91%), Gaps = 0/23 (0%)
 Frame = +2

Query  443  SEKELLVNKVISIPKDMGTFNXG  511
            SEKELLVN+ ISIPKDMGTFN G
Sbjct  119  SEKELLVNRFISIPKDMGTFNCG  141


>gi|115439497|ref|NP_001044028.1|  Os01g0708600 [Oryza sativa (japonica cultivar-group)]
 gi|56784129|dbj|BAD81514.1|  SPP30-like [Oryza sativa (japonica cultivar-group)]
 gi|56784761|dbj|BAD81934.1|  SPP30-like [Oryza sativa (japonica cultivar-group)]
 gi|113533559|dbj|BAF05942.1|  Os01g0708600 [Oryza sativa (japonica cultivar-group)]
Length=194

 Score =  227 bits (578),  Expect(2) = 3e-65
 Identities = 112/118 (94%), Positives = 117/118 (99%), Gaps = 0/118 (0%)
 Frame = +1

Query  88   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY  267
            MIGVGK KQY+NVLDKPLS+G+QEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY
Sbjct  1    MIGVGKAKQYANVLDKPLSRGRQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY  60

Query  268  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMI  441
            AVGARVLELLCHR+KGNRRETRLLGILSF+HSTVWKVLFGKVADSLEKGTEHEDEYMI
Sbjct  61   AVGARVLELLCHREKGNRRETRLLGILSFIHSTVWKVLFGKVADSLEKGTEHEDEYMI  118


 Score = 41.2 bits (95),  Expect(2) = 3e-65
 Identities = 18/23 (78%), Positives = 20/23 (86%), Gaps = 0/23 (0%)
 Frame = +2

Query  443  SEKELLVNKVISIPKDMGTFNXG  511
            SEKELLVN+ IS+PKDMG FN G
Sbjct  119  SEKELLVNRFISVPKDMGAFNCG  141


>gi|4959712|gb|AAD34459.1|AF136010_1  SPP30 [Solanum chacoense]
Length=194

 Score =  226 bits (575),  Expect(2) = 6e-65
 Identities = 112/118 (94%), Positives = 116/118 (98%), Gaps = 0/118 (0%)
 Frame = +1

Query  88   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY  267
            MI VGKIKQYSNVL++PLSKGKQEVSLSAFAFLFSELVQYNQTQVDNI ELERRLEDAGY
Sbjct  1    MINVGKIKQYSNVLERPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNITELERRLEDAGY  60

Query  268  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMI  441
            AVGAR+LELLCHR+KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMI
Sbjct  61   AVGARILELLCHREKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMI  118


 Score = 41.6 bits (96),  Expect(2) = 6e-65
 Identities = 19/23 (82%), Positives = 20/23 (86%), Gaps = 0/23 (0%)
 Frame = +2

Query  443  SEKELLVNKVISIPKDMGTFNXG  511
            SEKELLVN+ ISIPKDMG FN G
Sbjct  119  SEKELLVNRFISIPKDMGAFNCG  141


>gi|116059274|emb|CAL54981.1|  Transport protein particle (TRAPP) complex subunit (ISS) [Ostreococcus 
tauri]
Length=194

 Score = 97.1 bits (240),  Expect(2) = 2e-24
 Identities = 51/102 (50%), Positives = 71/102 (69%), Gaps = 3/102 (2%)
 Frame = +1

Query  139  LSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGN  318
            L KGK EV+ SAFA +FSELVQY++ +V ++ ELER L++AG  VG R  E    R++G+
Sbjct  15   LGKGKSEVASSAFALVFSELVQYHRARVRDVGELERALDEAGEMVGRRAFEAQAFRERGS  74

Query  319  -RRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMI  441
             +R+ RLL +L F  S VWK +FG+ ADSLE     +DEY++
Sbjct  75   GKRDHRLLPLLQFTQSVVWKNVFGRAADSLE--VYDDDEYLL  114


 Score = 34.7 bits (78),  Expect(2) = 2e-24
 Identities = 13/23 (56%), Positives = 19/23 (82%), Gaps = 0/23 (0%)
 Frame = +2

Query  443  SEKELLVNKVISIPKDMGTFNXG  511
            S+K+LLVN+ +S+PKD+G  N G
Sbjct  115  SDKDLLVNRFVSVPKDLGDLNCG  137


>gi|116309580|emb|CAH66639.1|  OSIGBa0140A01.7 [Oryza sativa (indica cultivar-group)]
Length=488

 Score = 30.8 bits (68),  Expect = 2.8
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -1

Query  439  SCIRLHVQCPSQASQPPFQITPSRQ--CCAQKIKYPTIESPSYFPYPYGTKVQELELQLH  266
            S +++  + P Q S  P +  P +Q    A     P  ++P++ P P  + +QE E+  H
Sbjct  265  SIVKVMKEIPPQISAIPSRPAPPKQEKQVAPAPVAPVADAPTFSPNPESSNIQEAEVDAH  324

Query  265  TLH  257
             ++
Sbjct  325  AIY  327


>gi|115457942|ref|NP_001052571.1|  Os04g0372800 [Oryza sativa (japonica cultivar-group)]
 gi|21742151|emb|CAD40577.1|  OSJNBa0069D17.2 [Oryza sativa (japonica cultivar-group)]
 gi|113564142|dbj|BAF14485.1|  Os04g0372800 [Oryza sativa (japonica cultivar-group)]
Length=486

 Score = 30.8 bits (68),  Expect = 2.8
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -1

Query  439  SCIRLHVQCPSQASQPPFQITPSRQ--CCAQKIKYPTIESPSYFPYPYGTKVQELELQLH  266
            S +++  + P Q S  P +  P +Q    A     P  ++P++ P P  + +QE E+  H
Sbjct  263  SIVKVMKEIPPQISAIPSRPAPPKQEKQVAPAPVAPVADAPTFSPNPESSNIQEAEVDAH  322

Query  265  TLH  257
             ++
Sbjct  323  AIY  325


>gi|8778784|gb|AAF79792.1|AC020646_15  T32E20.31 [Arabidopsis thaliana]
Length=416

 Score = 29.6 bits (65),  Expect = 6.1
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query  411  LLKRVSHLSK*HLPDSAVHKR*NTQQSSLPPISLIPMAQKFKNSSSNCI-PCILQPS  244
            LLK++  L    LP    HK   ++QS+ PP   + +A     SS + + P +  P+
Sbjct  176  LLKKIKALKSVKLPKFRYHKISRSRQSTSPPFKKVRLALNHHTSSESPVNPVVYSPN  232


>gi|15221231|ref|NP_174889.1|  unknown protein [Arabidopsis thaliana]
Length=439

 Score = 29.6 bits (65),  Expect = 6.1
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query  411  LLKRVSHLSK*HLPDSAVHKR*NTQQSSLPPISLIPMAQKFKNSSSNCI-PCILQPS  244
            LLK++  L    LP    HK   ++QS+ PP   + +A     SS + + P +  P+
Sbjct  186  LLKKIKALKSVKLPKFRYHKISRSRQSTSPPFKKVRLALNHHTSSESPVNPVVYSPN  242


>gi|110288900|gb|ABB47192.2|  retrotransposon protein, putative, Ty3-gypsy subclass [Oryza 
sativa (japonica cultivar-group)]
Length=1194

 Score = 29.3 bits (64),  Expect = 8.0
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query  412  PSQASQPPFQITPSRQCCAQKIKYP-TIESPSYFPYPYG  299
            PSQ  Q P Q TP RQ   Q I++P ++ + + F  P G
Sbjct  372  PSQQPQQPIQQTPLRQQIVQPIQHPGSLNASAGFAVPGG  410


>gi|92877081|gb|ABE84301.1|  DIRP; Cytochrome c region [Medicago truncatula]
Length=633

 Score = 29.3 bits (64),  Expect = 8.0
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = -2

Query  345  NTQQSSLPPISLIPMAQKFKN----SSSNCIPCILQPSF*FGNVINLCLIVLNKLRKQEC  178
            N  Q+S   +SL P+A         SSSNC  C  Q S    ++  +      K R    
Sbjct  454  NAYQASSSVLSLKPIANLEDPGGHASSSNCSACHNQESISQSHIAEIVESSRRKARTMVV  513

Query  177  KCTQANLLFALAEGLVEDVRVLLD  106
            + TQA  +F   E  VE V  +++
Sbjct  514  QATQAMSVFRKTESKVERVEDVIN  537

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 415
Number of extensions: 1
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 511
Length of database: 101054579
Length adjustment: 105
Effective length of query: 406
Effective length of database: 71302934
Effective search space: 4634690710
Effective search space used: 4634690710
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 63 (28.9 bits)