Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168944000-1005-52204075493.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig276 Length=539
Score E Sequences producing significant alignments: (Bits) Value gi|6831665|sp|O65731|RS5_CICAR 40S ribosomal protein S5 >gi|3... 289 4e-78 gi|15228111|ref|NP_181264.1| ATRPS5B (RIBOSOMAL PROTEIN 5B); ... 288 1e-77 gi|15229897|ref|NP_187800.1| ATRPS5A (RIBOSOMAL PROTEIN 5A); ... 287 1e-77 gi|115485513|ref|NP_001067900.1| Os11g0482000 [Oryza sativa (... 286 3e-77 gi|21617886|gb|AAM66936.1| 40S ribosomal protein S5 [Arabidopsis 285 7e-77 gi|115433960|ref|NP_001041738.1| Os01g0100700 [Oryza sativa (... 281 8e-76 gi|40748265|gb|AAR89617.1| 40S ribosomal protein S5 [Capsicum an 274 1e-73 gi|83582438|emb|CAJ45370.1| 40S ribosomal protein S5 [Chlamydomo 255 6e-68 gi|116058572|emb|CAL54279.1| Ribosomal protein S7 (ISS) [Ostreoc 239 3e-63 gi|37780996|gb|AAP35042.1| putative 40S ribosomal protein S5 [Vi 227 2e-59 gi|6831664|sp|O24111|RS5_NICPL 40S ribosomal protein S5 >gi|1... 227 2e-59 gi|108864390|gb|ABG22487.1| 40S ribosomal protein S5, putativ... 178 9e-45 gi|28193498|emb|CAD28611.1| 40S ribosomal protein s5 [Polytomell 154 2e-37 gi|116001729|emb|CAA79205.1| 40S RIBOSOMAL PROTEIN S5 [Arabidops 119 9e-27 gi|108796921|ref|YP_636219.1| ribosomal protein S7 [Pseudendo... 44.7 2e-04 gi|108773271|ref|YP_635705.1| ribosomal protein S7 [Chara vul... 43.5 5e-04 gi|22711974|ref|NP_683769.1| ribosomal protein S7 [Chaetospha... 43.5 5e-04 gi|45454120|gb|AAS65730.1| ribosomal protein S7 [Xyris jupicai] 42.7 8e-04 gi|11467798|ref|NP_050849.1| ribosomal protein S7 [Nephroselm... 42.4 0.001 gi|113170435|ref|YP_717227.1| Rps7 [Ostreococcus tauri] >gi|1... 41.6 0.002 gi|56236541|gb|AAV84630.1| ribosomal protein S7 [Cephalotaxus ha 40.4 0.004 gi|34333530|gb|AAQ64561.1| ribosomal protein S7 [Phyllocladus al 40.0 0.005 gi|56236533|gb|AAV84624.1| ribosomal protein S7 [Saxegothaea con 39.7 0.007 gi|108796851|ref|YP_636416.1| ribosomal protein S7 [Staurastr... 39.7 0.007 gi|33318760|gb|AAQ05283.1| ribosomal protein S7 [Podocarpus chin 39.3 0.009 gi|1173277|sp|P42342|RR7_SPIMX Chloroplast 30S ribosomal prot... 39.3 0.009 gi|33338934|gb|AAQ14239.1| ribosomal protein S7 [Welwitschia mir 38.9 0.011 gi|33338891|gb|AAQ14207.1| ribosomal protein S7 [Ephedra sinica] 38.9 0.011 gi|62287271|sp|Q6KGW1|RR7_SCIVE Chloroplast 30S ribosomal pro... 38.9 0.011 gi|29565690|ref|NP_817291.1| ribosomal protein S7 [Pinus kora... 38.9 0.011 gi|66865839|gb|AAY57520.1| ribosomal protein S7 [Lactuca sativa] 38.5 0.015 gi|48476035|gb|AAP29434.2| ribosomal protein S7 [Adiantum capill 38.5 0.015 gi|49574634|ref|NP_848123.2| ribosomal protein S7 [Adiantum c... 38.5 0.015 gi|62287286|sp|Q71L16|RR7_CEDDE Chloroplast 30S ribosomal pro... 38.5 0.015 gi|81176297|ref|YP_398374.1| chloroplast 30S ribosomal protei... 38.5 0.015 gi|7524749|ref|NP_042503.1| ribosomal protein S7 [Pinus thunb... 38.5 0.015 gi|94502536|ref|YP_588163.1| ribosomal protein S7 [Helianthus... 38.1 0.019 gi|37544903|gb|AAN07054.1| ribosomal protein S7 [Gnetum gnemon] 37.7 0.025 gi|62287240|sp|Q6EM56|RR7_STEPS Chloroplast 30S ribosomal pro... 37.7 0.025 gi|62287174|sp|Q6KGX3|RR7_PEA Chloroplast 30S ribosomal prote... 37.7 0.025 gi|56236569|gb|AAV84651.1| ribosomal protein S7 [Widdringtonia c 37.4 0.033 gi|56236537|gb|AAV84627.1| ribosomal protein S7 [Araucaria bidwi 37.4 0.033 gi|78103294|ref|YP_358630.1| ribosomal protein S7 [Phalaenops... 37.4 0.033 gi|91214185|ref|YP_538809.1| ribosomal protein S7 [Glycine ma... 37.4 0.033 gi|45454151|gb|AAS65753.1| ribosomal protein S7 [Luzuriaga radic 37.0 0.043 gi|45454104|gb|AAS65718.1| ribosomal protein S7 [Flagellaria ind 37.0 0.043 gi|114804309|ref|YP_762306.1| ribosomal protein S7 [Morus ind... 37.0 0.043 gi|110588829|gb|ABG76915.1| ribosomal protein S7 [Fragaria x ... 37.0 0.043 gi|56236527|gb|AAV84620.1| ribosomal protein S7 [Abies lasioc... 37.0 0.043 gi|37721199|gb|AAN31982.1| ribosomal protein S7 [Anticlea elegan 37.0 0.043 gi|62287276|sp|Q6KGY2|RR7_GUNCH Chloroplast 30S ribosomal pro... 37.0 0.043 gi|62466136|gb|AAX83293.1| ribosomal protein S7 [Medicago sativa 37.0 0.043 gi|108802686|ref|YP_636344.1| ribosomal protein S7 [Eucalyptu... 37.0 0.043 gi|68164849|ref|YP_247645.1| ribosomal protein S7 [Cucumis sa... 37.0 0.043 gi|13518482|ref|NP_084841.1| ribosomal protein S7 [Lotus corn... 37.0 0.043 gi|115531940|ref|YP_784095.1| ribosomal protein S7 [Pelargoni... 36.6 0.056 gi|62287243|sp|Q6EM77|RR7_PHYAM Chloroplast 30S ribosomal pro... 36.6 0.056 gi|62287291|sp|Q71T50|RR7_HYDCA Chloroplast 30S ribosomal pro... 36.6 0.056 gi|30352076|ref|NP_848103.1| ribosomal protein S7 [Adiantum capi 36.6 0.056 gi|68052866|sp|Q589A4|RR7_SILLA Chloroplast 30S ribosomal pro... 36.6 0.056 gi|28202217|ref|NP_777458.1| ribosomal protein S7 [Anthoceros... 36.6 0.056 gi|17367817|sp|Q9TJQ9|RR7_PROWI Plastid 30S ribosomal protein... 36.6 0.056 gi|32480889|ref|NP_862800.1| ribosomal protein S7 [Calycanthu... 36.6 0.056 gi|45454190|gb|AAS65782.1| ribosomal protein S7 [Petermannia cir 36.2 0.073 gi|45454186|gb|AAS65779.1| ribosomal protein S7 [Wurmbea pygmaea 36.2 0.073 gi|45454163|gb|AAS65762.1| ribosomal protein S7 [Philesia mag... 36.2 0.073 gi|45454143|gb|AAS65747.1| ribosomal protein S7 [Calochortus ... 36.2 0.073 gi|45454139|gb|AAS65744.1| ribosomal protein S7 [Alstroemeria au 36.2 0.073 gi|116617153|ref|YP_817528.1| ribosomal protein S7 [Coffea ar... 36.2 0.073 gi|116008991|gb|ABJ52164.1| ribosomal protein S7 [Phyllostachys 36.2 0.073 gi|114329701|ref|YP_740522.1| ribosomal protein S7 [Citrus si... 36.2 0.073 gi|110227124|ref|YP_665603.1| ribosomal protein S7 [Populus a... 36.2 0.073 gi|37721265|gb|AAN32031.1| ribosomal protein S7 [Blandfordia pun 36.2 0.073 gi|37721183|gb|AAN31970.1| ribosomal protein S7 [Burmannia capit 36.2 0.073 gi|33318740|gb|AAQ05268.1| ribosomal protein S7 [Ceratozamia ... 36.2 0.073 gi|52220856|ref|YP_087012.1| ribosomal protein S7 [Panax gins... 36.2 0.073 gi|62287224|sp|Q67IC5|RR7_ASPOF Chloroplast 30S ribosomal pro... 36.2 0.073 gi|62287247|sp|Q6EM99|RR7_EUOAL Chloroplast 30S ribosomal pro... 36.2 0.073 gi|62287245|sp|Q6EM87|RR7_HYDMC Chloroplast 30S ribosomal pro... 36.2 0.073 gi|62287289|sp|Q71L33|RR7_CYCRE Chloroplast 30S ribosomal pro... 36.2 0.073 gi|62287287|sp|Q71L19|RR7_STAER Chloroplast 30S ribosomal pro... 36.2 0.073 gi|62287275|sp|Q6KGX9|RR7_LILSU Chloroplast 30S ribosomal pro... 36.2 0.073 gi|62287290|sp|Q71L39|RR7_BOWSE Chloroplast 30S ribosomal pro... 36.2 0.073 gi|17367740|sp|Q9MSQ3|RR7_ZAMFU Chloroplast 30S ribosomal pro... 36.2 0.073 gi|82754670|gb|ABB90084.1| ribosomal protein S7 [Solanum tube... 36.2 0.073 gi|46805099|dbj|BAD17338.1| rice chloroplast ribosomal protei... 36.2 0.073 gi|11466836|ref|NP_039433.1| ribosomal protein S7 [Oryza sati... 36.2 0.073 gi|11467245|ref|NP_043077.1| ribosomal protein S7 [Zea mays] ... 36.2 0.073 gi|24638189|sp|O63057|RR7_LATCL Plastid 30S ribosomal protein... 36.2 0.073 gi|11466006|ref|NP_054548.1| ribosomal protein S7 [Nicotiana ... 36.2 0.073 gi|45454147|gb|AAS65750.1| ribosomal protein S7 [Campynema linea 35.8 0.096 gi|108773329|ref|YP_635884.1| ribosomal protein S7 [Oltmannsi... 35.8 0.096 gi|121720659|ref|YP_001001580.1| ribosomal protein S7 [Nuphar... 35.8 0.096 gi|37721289|gb|AAN32048.1| ribosomal protein S7 [Iris missourien 35.8 0.096 gi|37721215|gb|AAN31994.1| ribosomal protein S7 [Ensete ventrico 35.8 0.096 gi|37721179|gb|AAN31967.1| ribosomal protein S7 [Tofieldia gluti 35.8 0.096 gi|37721235|gb|AAN32009.1| ribosomal protein S7 [Roystonea princ 35.8 0.096 gi|37721175|gb|AAN31964.1| ribosomal protein S7 [Scheuchzeria... 35.8 0.096 gi|62287228|sp|Q67IL8|RR7_ANACO Chloroplast 30S ribosomal pro... 35.8 0.096 gi|62287227|sp|Q67II8|RR7_TYPAN Chloroplast 30S ribosomal pro... 35.8 0.096
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 312 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 539 Length of database: 101054579 Length adjustment: 106 Effective length of query: 433 Effective length of database: 71019585 Effective search space: 5184429705 Effective search space used: 5184429705 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)