RID=1168944021-23998-125797917966.BLASTQ1, Contig277

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168944021-23998-125797917966.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Score E Sequences producing significant alignments: (Bits) Value gi|115482716|ref|NP_001064951.1| Os10g0495500 [Oryza sativa (... 28.9 5.6

gi|110289328|gb|AAP54429.2| Uncharacterised protein family co... 28.9 5.6 gi|75157256|sp|Q8LNU5|NOC2L_ORYSA Nucleolar complex protein 2... 28.9 5.6

Alignments

 

>gi|115482716|ref|NP_001064951.1|  Os10g0495500 [Oryza sativa (japonica cultivar-group)]
 gi|113639560|dbj|BAF26865.1|  Os10g0495500 [Oryza sativa (japonica cultivar-group)]
Length=769

 Score = 28.9 bits (63),  Expect = 5.6
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 0/35 (0%)
 Frame = +2

Query  53   FADNDETVWHVNDWRQPLGTLEMTYLTVLMLYLFC  157
            F+  DE   H+  W   +   EM++LT++ L  FC
Sbjct  505  FSAVDELAKHLAQWSYSIAFFEMSFLTLVRLQNFC  539


>gi|110289328|gb|AAP54429.2|  Uncharacterised protein family containing protein, expressed 
[Oryza sativa (japonica cultivar-group)]
Length=773

 Score = 28.9 bits (63),  Expect = 5.6
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 0/35 (0%)
 Frame = +2

Query  53   FADNDETVWHVNDWRQPLGTLEMTYLTVLMLYLFC  157
            F+  DE   H+  W   +   EM++LT++ L  FC
Sbjct  509  FSAVDELAKHLAQWSYSIAFFEMSFLTLVRLQNFC  543


>gi|75157256|sp|Q8LNU5|NOC2L_ORYSA  Nucleolar complex protein 2 homolog (Protein NOC2 homolog)
 gi|22128704|gb|AAM92816.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=757

 Score = 28.9 bits (63),  Expect = 5.6
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 0/35 (0%)
 Frame = +2

Query  53   FADNDETVWHVNDWRQPLGTLEMTYLTVLMLYLFC  157
            F+  DE   H+  W   +   EM++LT++ L  FC
Sbjct  493  FSAVDELAKHLAQWSYSIAFFEMSFLTLVRLQNFC  527

Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 116 Number of extensions: 1 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 244 Length of database: 101054579 Length adjustment: 52 Effective length of query: 192 Effective length of database: 86320431 Effective search space: 2503292499 Effective search space used: 2503292499 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)

Distribution of 3 Blast Hits on the Query Sequence