RID=1168944296-13650-124051328622.BLASTQ1, Contig293

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168944296-13650-124051328622.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig293
Length=529

Distribution of 19 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|15223970|ref|NP_177275.1|  SAG18 [Arabidopsis thaliana] >gi...   254    2e-67 
gi|115442393|ref|NP_001045476.1|  Os01g0962200 [Oryza sativa (...   244    2e-64 
gi|15239801|ref|NP_196748.1|  unknown protein [Arabidopsis tha...   154    1e-37 
gi|92898252|gb|ABE94118.1|  hypothetical protein MtrDRAFT_AC13...   124    3e-28
gi|56201768|dbj|BAD73218.1|  hypothetical protein [Oryza sativ...   120    2e-27
gi|115435084|ref|NP_001042300.1|  Os01g0197500 [Oryza sativa (...  67.8    2e-11 
gi|18397873|ref|NP_566301.1|  unknown protein [Arabidopsis tha...  32.7    0.78  
gi|115484471|ref|NP_001065897.1|  Os11g0181100 [Oryza sativa (...  26.2    2.5   
gi|62734077|gb|AAX96186.1|  Endomembrane protein 70 [Oryza sat...  26.2    2.5  
gi|33383411|gb|AAN05041.1|  NADH dehydrogenase subunit F [Rhyncho  30.4    3.9  
gi|15209145|gb|AAK91878.1|AC091665_4  Putative copia-type pol ...  30.0    5.0  
gi|46560898|gb|AAT00731.1|  PsaB [Megastylis latissimus]           29.6    6.6  
gi|845664|gb|AAA81358.1|  NADH dehydrogenase                       29.6    6.6  
gi|38175639|dbj|BAD01346.1|  endosomal protein-like [Oryza sat...  29.6    6.6   
gi|115487610|ref|NP_001066292.1|  Os12g0175700 [Oryza sativa (...  23.9    8.5   
gi|87241322|gb|ABD33180.1|  TGF-beta receptor, type I/II extra...  29.3    8.6

Alignments

 

>gi|15223970|ref|NP_177275.1|  SAG18 [Arabidopsis thaliana]
 gi|12323420|gb|AAG51683.1|AC016972_2  unknown protein; 59738-58353 [Arabidopsis thaliana]
Length=281

 Score =  254 bits (648),  Expect = 2e-67
 Identities = 130/173 (75%), Positives = 152/173 (87%), Gaps = 1/173 (0%)
 Frame = +2

Query  14   MRRRTVYAWGVAILSFVVLMIVTPAIPQSQEYHDFADQREFFGIPNTLNVVSNFPFLVIG  193
            M++RT+ AWG AIL F++LMIVTP IPQSQ YH+FADQR F GIPN LNV+SNFPFL+IG
Sbjct  1    MKKRTMSAWGSAILIFIILMIVTPTIPQSQAYHNFADQRSFLGIPNFLNVISNFPFLIIG  60

Query  194  VVGLVLCYY-KNYFKLCLQGELWGWTCFFIGVAAVGVGSSYYHLQPNDARLVWDRLPMti  370
            ++GL+LC+Y ++YF   L+GE  GWTCF+IGVAAV  GSSYYHL PNDA L+WDRLPMTI
Sbjct  61   LIGLILCFYPEDYFSFSLRGEKIGWTCFYIGVAAVAFGSSYYHLHPNDATLLWDRLPMTI  120

Query  371  aftsiiaifiiERIDEQKGTVSIIPLLLAGVISIMYWRFFDDLRPYALVQFVP  529
            AFTSI+AIF+IERIDE KGT SI PLLLAG++SI+YWRFFDDLRPYALVQFVP
Sbjct  121  AFTSIMAIFVIERIDEHKGTYSIAPLLLAGLVSILYWRFFDDLRPYALVQFVP  173


>gi|115442393|ref|NP_001045476.1|  Os01g0962200 [Oryza sativa (japonica cultivar-group)]
 gi|57899179|dbj|BAD87231.1|  membrane protein-like [Oryza sativa (japonica cultivar-group)]
 gi|113535007|dbj|BAF07390.1|  Os01g0962200 [Oryza sativa (japonica cultivar-group)]
Length=294

 Score =  244 bits (622),  Expect = 2e-64
 Identities = 125/172 (72%), Positives = 146/172 (84%), Gaps = 1/172 (0%)
 Frame = +2

Query  17   RRRTVYAWGVAILSFVVLMIVTPAIPQSQEYHDFADQREFF-GIPNTLNVVSNFPFLVIG  193
            RR+   AW  A+  FVVLM+VTPAIPQ++EYHDFADQR  F GIPNTLNV+SN PF  +G
Sbjct  5    RRKKWVAWVAAVTIFVVLMLVTPAIPQNEEYHDFADQRRLFLGIPNTLNVISNIPFFFVG  64

Query  194  VVGLVLCYYKNYFKLCLQGELWGWTCFFIGVAAVGVGSSYYHLQPNDARLVWDRLPMtia  373
            VVGLVLC+YKNYF+L  QGELW WT FF GV AV  GSSYYHL+PNDA LVWDRLPMTIA
Sbjct  65   VVGLVLCHYKNYFRLNSQGELWSWTLFFAGVTAVAFGSSYYHLKPNDATLVWDRLPMTIA  124

Query  374  ftsiiaifiiERIDEQKGTVSIIPLLLAGVISIMYWRFFDDLRPYALVQFVP  529
            FTS++AIFIIER+D++ GT S+ PL++AG +SIMYWRFFDDLRPYA++QFVP
Sbjct  125  FTSVMAIFIIERVDDRAGTKSLAPLVIAGALSIMYWRFFDDLRPYAVIQFVP  176


>gi|15239801|ref|NP_196748.1|  unknown protein [Arabidopsis thaliana]
 gi|7573354|emb|CAB87660.1|  putative protein [Arabidopsis thaliana]
 gi|38566674|gb|AAR24227.1|  At5g11870 [Arabidopsis thaliana]
 gi|40824251|gb|AAR92361.1|  At5g11870 [Arabidopsis thaliana]
Length=262

 Score =  154 bits (390),  Expect = 1e-37
 Identities = 76/172 (44%), Positives = 119/172 (69%), Gaps = 2/172 (1%)
 Frame = +2

Query  17   RRRTVYAWGVAILSFVVLMIVTPAIP-QSQEYHDFADQREFFGIPNTLNVVSNFPFLVIG  193
            +R+ +   G + L + ++M +TP +P  S  +H FAD+R F G+PNTLNV++NFPFL++G
Sbjct  13   KRKRILVVG-SFLCWSIIMFITPKVPLDSFRHHIFADKRNFMGVPNTLNVMTNFPFLIVG  71

Query  194  VVGLVLCYYKNYFKLCLQGELWGWTCFFIGVAAVGVGSSYYHLQPNDARLVWDRLPMtia  373
            V+G VLC   ++F + L GE+WGWT F+ G+A++  GS++YHL+P+D R+VWD LP+ IA
Sbjct  72   VLGFVLCIGGSFFNISLNGEIWGWTLFYAGIASLAFGSAFYHLKPDDNRIVWDTLPILIA  131

Query  374  ftsiiaifiiERIDEQKGTVSIIPLLLAGVISIMYWRFFDDLRPYALVQFVP  529
            ++S+ + F++ER  E+ G   +I LL    +S+ Y R F+DLR     Q +P
Sbjct  132  YSSLFSSFLVERAGEKVGLSCLILLLFISCLSVAYARVFNDLRLCMTFQLIP  183


>gi|92898252|gb|ABE94118.1|  hypothetical protein MtrDRAFT_AC133572g18v1 [Medicago truncatula]
Length=148

 Score =  124 bits (310),  Expect = 3e-28
 Identities = 53/120 (44%), Positives = 77/120 (64%), Gaps = 0/120 (0%)
 Frame = +2

Query  5    RREMRRRTVYAWGVAILSFVVLMIVTPAIPQSQEYHDFADQREFFGIPNTLNVVSNFPFL  184
            +R  R   ++      L  + L + TP IP+S   H FAD R   G+PNTLNV++NFPFL
Sbjct  11   KRWKRNHRIWGATATFLCCICLFLFTPTIPRSSNQHQFADVRNLLGVPNTLNVMTNFPFL  70

Query  185  VIGVVGLVLCYYKNYFKLCLQGELWGWTCFFIGVAAVGVGSSYYHLQPNDARLVWDRLPM  364
            V+GV+G V     ++F +  QGE+WGW  F+ G+  V  GS+YYHL+P++ R++WD LP+
Sbjct  71   VVGVLGFVFALDGSFFNISSQGEVWGWVVFYGGMIGVAFGSAYYHLKPDNHRVLWDTLPV  130


>gi|56201768|dbj|BAD73218.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
 gi|56201875|dbj|BAD73325.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=323

 Score =  120 bits (302),  Expect = 2e-27
 Identities = 77/209 (36%), Positives = 111/209 (53%), Gaps = 36/209 (17%)
 Frame = +2

Query  5    RREMRRRTVYAWGVAILSFVVLMIVTPAIPQSQEYHDFADQREFFGIPNTLNVVSNFPFL  184
            RRE RRR +   G A+L+  +L++ TP +  S   H FAD R   G+PNTLNV++ +P L
Sbjct  32   RREHRRRALA--GGAVLASALLLVATPRLRHSPALHLFADMRNLLGVPNTLNVLTAYPLL  89

Query  185  VIGVVGLVLCY-----------------------YKNYFKLC-----------LQGELWG  262
            + GV GLVLC                         K  F  C           L+ E  G
Sbjct  90   LAGVPGLVLCLCGSGCFGISEGRAVIKAGIEGMMLKEIFLFCYPYLTEKQISSLRWEALG  149

Query  263  WTCFFIGVAAVGVGSSYYHLQPNDARLVWDRLPMtiaftsiiaifiiERIDEQKGTVSII  442
            W  F+ G  A   GS+YYHL+P+D RL+WDRLPM I+ +S+++I +IER+DE+ G   ++
Sbjct  150  WFLFYAGNVAAAFGSAYYHLKPDDDRLIWDRLPMMISASSMLSILVIERVDERAGLSCLL  209

Query  443  PLLLAGVISIMYWRFFDDLRPYALVQFVP  529
             LL   ++S    R  DD+R + ++   P
Sbjct  210  SLLSLILVSSACERVLDDMRLWVVLNSAP  238


>gi|115435084|ref|NP_001042300.1|  Os01g0197500 [Oryza sativa (japonica cultivar-group)]
 gi|113531831|dbj|BAF04214.1|  Os01g0197500 [Oryza sativa (japonica cultivar-group)]
Length=825

 Score = 67.8 bits (164),  Expect = 2e-11
 Identities = 34/70 (48%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
 Frame = +2

Query  5    RREMRRRTVYAWGVAILSFVVLMIVTPAIPQSQEYHDFADQREFFGIPNTLNVVSNFPFL  184
            RRE RRR +   G A+L+  +L++ TP +  S   H FAD R   G+PNTLNV++ +P L
Sbjct  32   RREHRRRALA--GGAVLASALLLVATPRLRHSPALHLFADMRNLLGVPNTLNVLTAYPLL  89

Query  185  VIGVVGLVLC  214
            + GV GLVLC
Sbjct  90   LAGVPGLVLC  99


>gi|18397873|ref|NP_566301.1|  unknown protein [Arabidopsis thaliana]
 gi|6642644|gb|AAF20225.1|AC012395_12  hypothetical protein [Arabidopsis thaliana]
 gi|14334614|gb|AAK59485.1|  unknown protein [Arabidopsis thaliana]
 gi|18491191|gb|AAL69498.1|  unknown protein [Arabidopsis thaliana]
 gi|21592441|gb|AAM64392.1|  unknown [Arabidopsis thaliana]
Length=547

 Score = 32.7 bits (73),  Expect = 0.78
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 0/38 (0%)
 Frame = -3

Query  323  GDDSTRNQLQQQPHQ*KNKSNPIVHLANIT*NNSYNNK  210
            GD S+++QLQQQPH  K  S P + L ++     Y N+
Sbjct  108  GDSSSQSQLQQQPHYLKTCSKPNLDLGSVVYLLGYANQ  145


>gi|115484471|ref|NP_001065897.1|  Os11g0181100 [Oryza sativa (japonica cultivar-group)]
 gi|108864064|gb|ABA91795.2|  Endomembrane protein 70 containing protein, expressed [Oryza 
sativa (japonica cultivar-group)]
 gi|108864065|gb|ABA91796.2|  Endomembrane protein 70 containing protein, expressed [Oryza 
sativa (japonica cultivar-group)]
 gi|113644601|dbj|BAF27742.1|  Os11g0181100 [Oryza sativa (japonica cultivar-group)]
Length=593

 Score = 26.2 bits (56),  Expect(2) = 2.5
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +2

Query  179  FLVIGVVGLVLCYYKNYFKLCLQGELWGWTCFFIGVAA---VGVGSSYYH  319
            F+++ +V + +     YF L  +   W WT FF   +    V + S YY+
Sbjct  492  FVILIIVTICVTIVGTYFLLNAENYHWQWTSFFSAASTALYVYLYSIYYY  541


 Score = 23.5 bits (49),  Expect(2) = 2.5
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 0/20 (0%)
 Frame = +2

Query  23   RTVYAWGVAILSFVVLMIVT  82
            +  Y +G  +L FV+L+IVT
Sbjct  480  KVYYVYGFMLLVFVILIIVT  499


>gi|62734077|gb|AAX96186.1|  Endomembrane protein 70 [Oryza sativa (japonica cultivar-group)]
Length=570

 Score = 26.2 bits (56),  Expect(2) = 2.5
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +2

Query  179  FLVIGVVGLVLCYYKNYFKLCLQGELWGWTCFFIGVAA---VGVGSSYYH  319
            F+++ +V + +     YF L  +   W WT FF   +    V + S YY+
Sbjct  486  FVILIIVTICVTIVGTYFLLNAENYHWQWTSFFSAASTALYVYLYSIYYY  535


 Score = 23.5 bits (49),  Expect(2) = 2.5
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 0/20 (0%)
 Frame = +2

Query  23   RTVYAWGVAILSFVVLMIVT  82
            +  Y +G  +L FV+L+IVT
Sbjct  474  KVYYVYGFMLLVFVILIIVT  493


>gi|33383411|gb|AAN05041.1|  NADH dehydrogenase subunit F [Rhynchospora corniculata]
Length=677

 Score = 30.4 bits (67),  Expect = 3.9
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +2

Query  11   EMRRRTVYAWGV--AILSFVVLMIVTPAIPQSQEYHDFADQREFFGIPNTLNVVSNF  175
            +  +  +Y+W      +  +   + T  I +  ++ +F D+R   GIPN + V+S F
Sbjct  621  DQMQNAIYSWSYHRGYIDILYTSVFTSGIRRLSKFTEFFDRRIIDGIPNGIGVISFF  677


>gi|15209145|gb|AAK91878.1|AC091665_4  Putative copia-type pol polyprotein [Oryza sativa]
 gi|31430163|gb|AAP52115.1|  retrotransposon protein, putative, Ty1-copia subclass [Oryza 
sativa (japonica cultivar-group)]
Length=1225

 Score = 30.0 bits (66),  Expect = 5.0
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -2

Query  501  RRSSKNLQYMILITPASSSGMMETVPFCSSILSIINIAMIEVNAIVIGNLSHTSRASFG  325
            RR+   +  ++++ PAS      ++   +  L + ++A+ E +A V+GN SH  +   G
Sbjct  27   RRADAAITVVVVVLPASGFNTQNSLEIWAKFLGVTSMAVPEAHANVVGN-SHGRKRGHG  84


>gi|46560898|gb|AAT00731.1|  PsaB [Megastylis latissimus]
Length=555

 Score = 29.6 bits (65),  Expect = 6.6
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = +2

Query  191  GVVGLVLCYYKNYFK------LCLQGELWGWTCFFIGVAAVGVGSSYYHLQP  328
            G +G V   Y   ++      LC  G+L+    F + ++A+ + +S+ HLQP
Sbjct  78   GAIGPVNIAYSGVYQWWYTIGLCTNGDLYTGAIFLLFLSAISLIASWLHLQP  129


>gi|845664|gb|AAA81358.1|  NADH dehydrogenase
Length=747

 Score = 29.6 bits (65),  Expect = 6.6
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = +2

Query  104  EYHDFADQREFFGIPNTLNVVSNFPFLVI-----GVVGLVLCYYKNYFKLCL  244
            E+  F D+R   GIPN + ++S F   VI     G +   L +Y +Y  +CL
Sbjct  685  EFAHFFDRRIIDGIPNGVGLLSFFVAEVIKSVGGGRISSYLFFYFSYVSICL  736


>gi|38175639|dbj|BAD01346.1|  endosomal protein-like [Oryza sativa (japonica cultivar-group)]
 gi|38175655|dbj|BAD01360.1|  endosomal protein-like [Oryza sativa (japonica cultivar-group)]
Length=671

 Score = 29.6 bits (65),  Expect = 6.6
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
 Frame = +2

Query  155  LNVVSNFPFLVIGVVGLVLCYYKNYFKLCLQGELWGWTCFFI--GVAAVGVGSSYYHL  322
            L VV      V G V +VL     Y  LC++   W W  FF    VAA  +G + Y+L
Sbjct  565  LLVVMALLVAVCGEVSVVL----TYMGLCVEDWRWWWRAFFASGSVAAYTLGYAVYYL  618


>gi|115487610|ref|NP_001066292.1|  Os12g0175700 [Oryza sativa (japonica cultivar-group)]
 gi|77553804|gb|ABA96600.1|  Endomembrane protein 70 containing protein, expressed [Oryza 
sativa (japonica cultivar-group)]
 gi|113648799|dbj|BAF29311.1|  Os12g0175700 [Oryza sativa (japonica cultivar-group)]
Length=598

 Score = 23.9 bits (50),  Expect(2) = 8.5
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 0/20 (0%)
 Frame = +2

Query  23   RTVYAWGVAILSFVVLMIVT  82
            +  Y +G  +L FV+L+IVT
Sbjct  485  KVYYVYGFMLLVFVILLIVT  504


 Score = 23.9 bits (50),  Expect(2) = 8.5
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +2

Query  179  FLVIGVVGLVLCYYKNYFKLCLQGELWGWTCFFIGVAA---VGVGSSYYH  319
            F+++ +V + +     YF L  +   W WT F    +    V + S YY+
Sbjct  497  FVILLIVTICVTIVGTYFLLNAENYHWQWTSFLSAASTALYVYLYSIYYY  546


>gi|87241322|gb|ABD33180.1|  TGF-beta receptor, type I/II extracellular region [Medicago truncatula]
Length=585

 Score = 29.3 bits (64),  Expect = 8.6
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
 Frame = +2

Query  137  FGIPNTLNVVSNF---PFLVIGVVGLVLCYYKNYFKLCLQGELWGWTCFFIGVAAVGVGS  307
            F IP++ N ++NF    FL+  V G +   Y N F  CL   L+G +   + +A V   +
Sbjct  57   FDIPSSANTLTNFMGSTFLLSLVGGFISDTYLNRFTTCL---LFG-SLEVLALALVTFQA  112

Query  308  SYYHLQPN  331
            +  HL PN
Sbjct  113  ASDHLHPN  120

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 357
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 529
Length of database: 101054579
Length adjustment: 106
Effective length of query: 423
Effective length of database: 71019585
Effective search space: 4971370950
Effective search space used: 4971370950
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 64 (29.3 bits)