Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168944410-32077-142365402605.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig299 Length=531
Score E Sequences producing significant alignments: (Bits) Value gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Da 198 8e-51 gi|92873940|gb|ABE82276.1| RNA-binding region RNP-1 (RNA reco... 197 1e-50 gi|7673359|gb|AAF66825.1| poly(A)-binding protein [Nicotiana tab 195 9e-50 gi|7673357|gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nic 192 8e-49 gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nic 192 8e-49 gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cuc 188 9e-48 gi|106879567|emb|CAJ38367.1| polyA-binding protein [Plantago maj 185 9e-47 gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa (... 184 1e-46 gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa (... 166 5e-41 gi|92888900|gb|ABE89613.1| polyadenylate binding protein, hum... 165 1e-40 gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa (... 161 1e-39 gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa (japo 161 1e-39 gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aest 157 3e-38 gi|15227815|ref|NP_179916.1| PAB4; RNA binding / translation ... 154 2e-37 gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding pr 154 2e-37 gi|18402769|ref|NP_564554.1| PAB8; RNA binding / translation ... 152 5e-37 gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Ara 148 1e-35 gi|30689921|ref|NP_195137.2| PAB2 (POLY(A)-BINDING PROTEIN 2)... 148 1e-35 gi|1171978|sp|P42731|PABP2_ARATH Polyadenylate-binding protei... 148 1e-35 gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max] 140 4e-33 gi|93359570|gb|ABF13311.1| poly-A binding protein [Phaseolus vul 136 4e-32 gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [... 107 3e-23 gi|5007080|gb|AAD37807.1| poly(A)-binding protein [Oryza sativa] 103 4e-22 gi|92877410|gb|ABE84528.1| Polyadenylate-binding protein/Hype... 96.7 4e-20 gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia p 95.5 1e-19 gi|14029147|gb|AAK51123.1| polyadenylated mRNA-binding protein 2 94.7 2e-19 gi|166786|gb|AAA32832.1| poly(A)-binding protein 73.9 3e-13 gi|15217573|ref|NP_177322.1| PAB5 (POLY(A)-BINDING PROTEIN); ... 73.9 3e-13 gi|33504432|emb|CAD43730.1| putative poly(A)-binding protein [Ma 70.5 3e-12 gi|33504434|emb|CAD44189.1| putative poly(A) binding protein [Ma 70.5 3e-12 gi|23197794|gb|AAN15424.1| Strong similarity to poly(A)-bindi... 69.3 8e-12 gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Ara 69.3 8e-12 gi|15219945|ref|NP_173690.1| PAB3 (POLY(A) BINDING PROTEIN 3)... 69.3 8e-12 gi|34015127|gb|AAQ56324.1| putative poly(A)-binding protein [... 67.8 2e-11 gi|3287682|gb|AAC25510.1|AAC25510 Strong similarity to gb|M97... 60.5 4e-09 gi|115468728|ref|NP_001057963.1| Os06g0589700 [Oryza sativa (... 57.4 3e-08 gi|50725435|dbj|BAD32907.1| putative polyadenylate-binding pr... 57.4 3e-08 gi|2213871|gb|AAB61594.1| poly(A)-binding protein [Mesembryanthe 54.7 2e-07 gi|62321231|dbj|BAD94406.1| putative poly(A) binding protein [Ar 47.0 4e-05 gi|115452253|ref|NP_001049727.1| Os03g0278500 [Oryza sativa (... 38.9 0.011 gi|15226539|ref|NP_179152.1| unknown protein [Arabidopsis tha... 38.5 0.014 gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydo 37.0 0.042 gi|22329932|ref|NP_174676.2| PAB1; RNA binding / translation ... 34.3 0.27 gi|77553432|gb|ABA96228.1| retrotransposon protein, putative,... 33.5 0.46 gi|886967|emb|CAA59340.1| low molecular weight glutenin [Triticu 33.5 0.46 gi|110559505|gb|ABG76007.1| low molecular weight glutenin subuni 32.7 0.79 gi|56480766|gb|AAV92011.1| low molecular weight glutenin [Tritic 32.7 0.79 gi|56480764|gb|AAV92010.1| low molecular weight glutenin [Tritic 32.7 0.79 gi|56126399|gb|AAV75994.1| low molecular weight glutenin subu... 32.7 0.79 gi|51493659|gb|AAU04842.1| low molecular weight glutenin subu... 32.7 0.79 gi|1857652|gb|AAB48475.1| low-molecular-weight glutenin stora... 32.7 0.79 gi|17425210|dbj|BAB78760.1| low-molecular-weight glutenin sub... 32.7 0.79 gi|15228016|ref|NP_181204.1| PAB7; RNA binding / translation ... 32.7 0.79 gi|17425208|dbj|BAB78759.1| low-molecular-weight glutenin sub... 32.7 0.79 gi|70663915|emb|CAE02929.3| OSJNBa0014K14.1 [Oryza sativa (japon 32.0 1.3 gi|92429653|gb|ABE77188.1| LMW-glutenin P3-5 [Triticum aestivum] 31.6 1.8 gi|108705671|gb|ABF93466.1| retrotransposon protein, putative... 31.6 1.8 gi|55167978|gb|AAV43846.1| hypothetical protein [Oryza sativa... 31.6 1.8 gi|47607144|gb|AAT36483.1| s-type low molecular weight glutenin 31.6 1.8 gi|77557115|gb|ABA99911.1| retrotransposon protein, putative,... 31.6 1.8 gi|17425164|dbj|BAB78737.1| low-molecular-weight glutenin sub... 31.6 1.8 gi|29893596|gb|AAP06850.1| unknown protein [Oryza sativa (jap... 31.2 2.3 gi|15233459|ref|NP_194643.1| antiporter/ drug transporter/ tr... 31.2 2.3 gi|47717670|gb|AAT37861.1| low molecular weight glutenin subu... 30.8 3.0 gi|92877413|gb|ABE84531.1| Polyadenylate binding protein, hum... 30.4 3.9 gi|18405102|ref|NP_566800.1| ubiquitin-protein ligase [Arabid... 30.4 3.9 gi|116058010|emb|CAL54213.1| Conserved WD40 repeat-containing... 30.0 5.1 gi|79512802|ref|NP_196852.3| FY (FY) [Arabidopsis thaliana] >... 30.0 5.1 gi|15234542|ref|NP_192975.1| unknown protein [Arabidopsis tha... 30.0 5.1 gi|9955540|emb|CAC05425.1| putative protein [Arabidopsis thalian 30.0 5.1 gi|22267595|gb|AAM94930.1| hypothetical protein [Oryza sativa... 30.0 5.1 gi|116056856|emb|CAL53145.1| Mismatch repair ATPase MSH4 (Mut... 29.6 6.7 gi|108862197|gb|ABG21887.1| Leucine Rich Repeat family protei... 29.6 6.7 gi|108862198|gb|ABA96476.2| Leucine Rich Repeat family protei... 29.6 6.7 gi|47834685|gb|AAT38996.1| Mei2-like protein [Pinus taeda] 29.6 6.7 gi|15238948|ref|NP_196671.1| unknown protein [Arabidopsis tha... 29.6 6.7 gi|108864451|gb|ABA94080.2| C2 domain containing protein, exp... 29.3 8.7 gi|92890896|gb|ABE90557.1| Multi antimicrobial extrusion prot... 29.3 8.7 gi|77551575|gb|ABA94372.1| Leucine Rich Repeat family protein... 29.3 8.7 gi|115443977|ref|NP_001045768.1| Os02g0128200 [Oryza sativa (... 29.3 8.7 gi|15239489|ref|NP_200905.1| transcription factor [Arabidopsi... 29.3 8.7
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 417 Number of extensions: 9 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 531 Length of database: 101054579 Length adjustment: 106 Effective length of query: 425 Effective length of database: 71019585 Effective search space: 5042390535 Effective search space used: 5042390535 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)