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BLASTX 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168944410-32077-142365402605.BLASTQ1


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig299
Length=531


Distribution of 83 Blast Hits on the Query Sequence



                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|13560783|gb|AAK30205.1|AF349964_1  poly(A)-binding protein [Da   198    8e-51
gi|92873940|gb|ABE82276.1|  RNA-binding region RNP-1 (RNA reco...   197    1e-50
gi|7673359|gb|AAF66825.1|  poly(A)-binding protein [Nicotiana tab   195    9e-50 UniGene info
gi|7673357|gb|AAF66824.1|AF190656_1  poly(A)-binding protein [Nic   192    8e-49 UniGene info
gi|7673355|gb|AAF66823.1|AF190655_1  poly(A)-binding protein [Nic   192    8e-49 UniGene info
gi|7528270|gb|AAF63202.1|AF240679_1  poly(A)-binding protein [Cuc   188    9e-48
gi|106879567|emb|CAJ38367.1|  polyA-binding protein [Plantago maj   185    9e-47
gi|115477976|ref|NP_001062583.1|  Os09g0115400 [Oryza sativa (...   184    1e-46 Gene info
gi|115475838|ref|NP_001061515.1|  Os08g0314800 [Oryza sativa (...   166    5e-41 Gene info
gi|92888900|gb|ABE89613.1|  polyadenylate binding protein, hum...   165    1e-40
gi|115459296|ref|NP_001053248.1|  Os04g0504800 [Oryza sativa (...   161    1e-39 Gene info
gi|70663933|emb|CAE02947.3|  OSJNBa0014K14.19 [Oryza sativa (japo   161    1e-39
gi|1737492|gb|AAB38974.1|  poly(A)-binding protein [Triticum aest   157    3e-38 UniGene infoGene info
gi|15227815|ref|NP_179916.1|  PAB4; RNA binding / translation ...   154    2e-37 UniGene infoGene info
gi|13430610|gb|AAK25927.1|AF360217_1  putative poly(A) binding pr   154    2e-37 UniGene info
gi|18402769|ref|NP_564554.1|  PAB8; RNA binding / translation ...   152    5e-37 UniGene infoGene info
gi|19347816|gb|AAL86321.1|  putative poly(A)-binding protein [Ara   148    1e-35 UniGene info
gi|30689921|ref|NP_195137.2|  PAB2 (POLY(A)-BINDING PROTEIN 2)...   148    1e-35 UniGene infoGene info
gi|1171978|sp|P42731|PABP2_ARATH  Polyadenylate-binding protei...   148    1e-35
gi|83853808|gb|ABC47841.1|  poly(A)-binding protein [Glycine max]   140    4e-33
gi|93359570|gb|ABF13311.1|  poly-A binding protein [Phaseolus vul   136    4e-32
gi|34015145|gb|AAQ56342.1|  putative poly(A)-binding protein [...   107    3e-23
gi|5007080|gb|AAD37807.1|  poly(A)-binding protein [Oryza sativa]   103    4e-22
gi|92877410|gb|ABE84528.1|  Polyadenylate-binding protein/Hype...  96.7    4e-20
gi|398327|emb|CAA81127.1|  poly(A)-mRNA binding protein [Anemia p  95.5    1e-19
gi|14029147|gb|AAK51123.1|  polyadenylated mRNA-binding protein 2  94.7    2e-19
gi|166786|gb|AAA32832.1|  poly(A)-binding protein                  73.9    3e-13
gi|15217573|ref|NP_177322.1|  PAB5 (POLY(A)-BINDING PROTEIN); ...  73.9    3e-13 UniGene infoGene info
gi|33504432|emb|CAD43730.1|  putative poly(A)-binding protein [Ma  70.5    3e-12
gi|33504434|emb|CAD44189.1|  putative poly(A) binding protein [Ma  70.5    3e-12
gi|23197794|gb|AAN15424.1|  Strong similarity to poly(A)-bindi...  69.3    8e-12 UniGene info
gi|9930616|gb|AAG02117.1|AF293840_1  poly(A) binding protein [Ara  69.3    8e-12 UniGene info
gi|15219945|ref|NP_173690.1|  PAB3 (POLY(A) BINDING PROTEIN 3)...  69.3    8e-12 UniGene infoGene info
gi|34015127|gb|AAQ56324.1|  putative poly(A)-binding protein [...  67.8    2e-11
gi|3287682|gb|AAC25510.1|AAC25510  Strong similarity to gb|M97...  60.5    4e-09
gi|115468728|ref|NP_001057963.1|  Os06g0589700 [Oryza sativa (...  57.4    3e-08 Gene info
gi|50725435|dbj|BAD32907.1|  putative polyadenylate-binding pr...  57.4    3e-08
gi|2213871|gb|AAB61594.1|  poly(A)-binding protein [Mesembryanthe  54.7    2e-07
gi|62321231|dbj|BAD94406.1|  putative poly(A) binding protein [Ar  47.0    4e-05 UniGene info
gi|115452253|ref|NP_001049727.1|  Os03g0278500 [Oryza sativa (...  38.9    0.011 Gene info
gi|15226539|ref|NP_179152.1|  unknown protein [Arabidopsis tha...  38.5    0.014 UniGene infoGene info
gi|2935338|gb|AAC39368.1|  poly(A) binding protein RB47 [Chlamydo  37.0    0.042 UniGene info
gi|22329932|ref|NP_174676.2|  PAB1; RNA binding / translation ...  34.3    0.27  UniGene infoGene info
gi|77553432|gb|ABA96228.1|  retrotransposon protein, putative,...  33.5    0.46 
gi|886967|emb|CAA59340.1|  low molecular weight glutenin [Triticu  33.5    0.46 
gi|110559505|gb|ABG76007.1|  low molecular weight glutenin subuni  32.7    0.79 
gi|56480766|gb|AAV92011.1|  low molecular weight glutenin [Tritic  32.7    0.79  UniGene info
gi|56480764|gb|AAV92010.1|  low molecular weight glutenin [Tritic  32.7    0.79  UniGene info
gi|56126399|gb|AAV75994.1|  low molecular weight glutenin subu...  32.7    0.79 
gi|51493659|gb|AAU04842.1|  low molecular weight glutenin subu...  32.7    0.79 
gi|1857652|gb|AAB48475.1|  low-molecular-weight glutenin stora...  32.7    0.79  UniGene infoGene info
gi|17425210|dbj|BAB78760.1|  low-molecular-weight glutenin sub...  32.7    0.79 
gi|15228016|ref|NP_181204.1|  PAB7; RNA binding / translation ...  32.7    0.79  UniGene infoGene info
gi|17425208|dbj|BAB78759.1|  low-molecular-weight glutenin sub...  32.7    0.79 
gi|70663915|emb|CAE02929.3|  OSJNBa0014K14.1 [Oryza sativa (japon  32.0    1.3  
gi|92429653|gb|ABE77188.1|  LMW-glutenin P3-5 [Triticum aestivum]  31.6    1.8  
gi|108705671|gb|ABF93466.1|  retrotransposon protein, putative...  31.6    1.8  
gi|55167978|gb|AAV43846.1|  hypothetical protein [Oryza sativa...  31.6    1.8  
gi|47607144|gb|AAT36483.1|  s-type low molecular weight glutenin   31.6    1.8  
gi|77557115|gb|ABA99911.1|  retrotransposon protein, putative,...  31.6    1.8  
gi|17425164|dbj|BAB78737.1|  low-molecular-weight glutenin sub...  31.6    1.8  
gi|29893596|gb|AAP06850.1|  unknown protein [Oryza sativa (jap...  31.2    2.3   Gene info
gi|15233459|ref|NP_194643.1|  antiporter/ drug transporter/ tr...  31.2    2.3   UniGene infoGene info
gi|47717670|gb|AAT37861.1|  low molecular weight glutenin subu...  30.8    3.0  
gi|92877413|gb|ABE84531.1|  Polyadenylate binding protein, hum...  30.4    3.9  
gi|18405102|ref|NP_566800.1|  ubiquitin-protein ligase [Arabid...  30.4    3.9   UniGene infoGene info
gi|116058010|emb|CAL54213.1|  Conserved WD40 repeat-containing...  30.0    5.1  
gi|79512802|ref|NP_196852.3|  FY (FY) [Arabidopsis thaliana] >...  30.0    5.1   UniGene infoGene info
gi|15234542|ref|NP_192975.1|  unknown protein [Arabidopsis tha...  30.0    5.1   UniGene infoGene info
gi|9955540|emb|CAC05425.1|  putative protein [Arabidopsis thalian  30.0    5.1  
gi|22267595|gb|AAM94930.1|  hypothetical protein [Oryza sativa...  30.0    5.1   Gene info
gi|116056856|emb|CAL53145.1|  Mismatch repair ATPase MSH4 (Mut...  29.6    6.7  
gi|108862197|gb|ABG21887.1|  Leucine Rich Repeat family protei...  29.6    6.7  
gi|108862198|gb|ABA96476.2|  Leucine Rich Repeat family protei...  29.6    6.7  
gi|47834685|gb|AAT38996.1|  Mei2-like protein [Pinus taeda]        29.6    6.7   UniGene info
gi|15238948|ref|NP_196671.1|  unknown protein [Arabidopsis tha...  29.6    6.7   UniGene infoGene info
gi|108864451|gb|ABA94080.2|  C2 domain containing protein, exp...  29.3    8.7  
gi|92890896|gb|ABE90557.1|  Multi antimicrobial extrusion prot...  29.3    8.7  
gi|77551575|gb|ABA94372.1|  Leucine Rich Repeat family protein...  29.3    8.7  
gi|115443977|ref|NP_001045768.1|  Os02g0128200 [Oryza sativa (...  29.3    8.7   Gene info
gi|15239489|ref|NP_200905.1|  transcription factor [Arabidopsi...  29.3    8.7   UniGene infoGene info
Alignments
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota] Length=658 Score = 198 bits (504), Expect = 8e-51 Identities = 121/172 (70%), Positives = 134/172 (77%), Gaps = 7/172 (4%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYVALAQRKEERRARLQAQFSQMRP AM P GPRMPMY PGA G+GQQLFYGQ PPA+I Sbjct 392 LYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMI 451 Query 181 TPQPGFGYQQQLVPGMR------PNFFMPMVqpgqqnqrpggrrsgAGpmqqtqqplpfm 342 PQ GFGYQQQLVPGMR PNFFMPMV Q + G R GAGP QQTQQP+P M Sbjct 452 APQAGFGYQQQLVPGMRPGGGPMPNFFMPMV-QQGQQGQRPGGRRGAGPAQQTQQPVPMM 510 Query 343 qpqmlpKGRVYRYPPGRNMTDVPISGVPGGMLPVPYEVGGMPFRDAAFSQPM 498 Q++P+GR+YR+PPGRN+ DV + GV GGMLPVPY +GGM R+AA QPM Sbjct 511 PQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPM 562 >gi|92873940|gb|ABE82276.1| RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula] Length=654 Score = 197 bits (502), Expect = 1e-50 Identities = 116/176 (65%), Positives = 130/176 (73%), Gaps = 8/176 (4%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYV LAQRKE+RRARLQAQF+QMRP +M P PRMPMYPPG G+GQQ+FYGQGPPAII Sbjct 386 LYVTLAQRKEDRRARLQAQFAQMRPVSMPPSVAPRMPMYPPGGPGMGQQIFYGQGPPAII 445 Query 181 TPQPGFGYQQQLVPGMR------PNFFMPMVqpgqqnqrpggrrsgAGpmqqtqqplpfm 342 QPGFGYQQQLVPGMR PNFF+PMV Q Q G +QQ+QQP+P M Sbjct 446 PSQPGFGYQQQLVPGMRPGGAPVPNFFVPMV--QQGQQGQRPGGRRGGGVQQSQQPVPLM 503 Query 343 qpqmlpKGRVYRYPPGRNMTDVPISGVPGGMLPVPYEVGGMPFRDAAFSQPMTTGA 510 QMLP+GRVYRYPPGR M D P+ GV GGM VPY+VGGMP RDA+ SQ + GA Sbjct 504 PQQMLPRGRVYRYPPGRGMPDGPMPGVAGGMYSVPYDVGGMPIRDASLSQQIPIGA 559 >gi|7673359|gb|AAF66825.1| UniGene info poly(A)-binding protein [Nicotiana tabacum] Length=479 Score = 195 bits (495), Expect = 9e-50 Identities = 120/172 (69%), Positives = 137/172 (79%), Gaps = 7/172 (4%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYVALAQRKEERRA+L+AQFSQ+RP AM P PRMP+YPPGA G+GQQLFYGQGPPA+I Sbjct 212 LYVALAQRKEERRAKLRAQFSQLRPVAMPPSLAPRMPIYPPGAPGIGQQLFYGQGPPAMI 271 Query 181 TPQPGFGYQQQLVPGMR------PNFFMPMVqpgqqnqrpggrrsgAGpmqqtqqplpfm 342 PQ GFGYQQQLVPGMR PNFFMP+V Q + G R GAGP+QQTQQP+P M Sbjct 272 PPQAGFGYQQQLVPGMRPGGAPMPNFFMPLV-QQGQQGQRPGGRRGAGPVQQTQQPMPLM 330 Query 343 qpqmlpKGRVYRYPPGRNMTDVPISGVPGGMLPVPYEVGGMPFRDAAFSQPM 498 Q QMLP+GR+YRYPPGRN + P+ GVPGGML VPY++GGM RD+A QPM Sbjct 331 QQQMLPRGRMYRYPPGRNGPEGPMPGVPGGMLSVPYDMGGMLPRDSAMGQPM 382 >gi|7673357|gb|AAF66824.1|AF190656_1 UniGene info poly(A)-binding protein [Nicotiana tabacum] Length=330 Score = 192 bits (487), Expect = 8e-49 Identities = 124/176 (70%), Positives = 135/176 (76%), Gaps = 6/176 (3%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYVALAQRKEERRARLQAQFSQMRP AMA PRMPMYPPG GLGQQ+FYGQ PA++ Sbjct 60 LYVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQPQPAML 119 Query 181 TPQPGFGYQQQLVPGMR------PNFFMPMVqpgqqnqrpggrrsgAGpmqqtqqplpfm 342 PQ GFGYQQQLVPGMR PNFFMPMVQ GQQ QRPG RR GA P+QQ QQP+P M Sbjct 120 PPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGSRRGGAVPLQQGQQPVPLM 179 Query 343 qpqmlpKGRVYRYPPGRNMTDVPISGVPGGMLPVPYEVGGMPFRDAAFSQPMTTGA 510 Q QM P+GR YRYPPGR + DV GV GGM +PY++GGMP RDA QP+ GA Sbjct 180 QQQMFPRGRGYRYPPGRGLPDVAFPGVGGGMFSIPYDMGGMPVRDAGIVQPIPVGA 235 >gi|7673355|gb|AAF66823.1|AF190655_1 UniGene info poly(A)-binding protein [Nicotiana tabacum] Length=649 Score = 192 bits (487), Expect = 8e-49 Identities = 125/176 (71%), Positives = 136/176 (77%), Gaps = 6/176 (3%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYVALAQRKEERRARLQAQFSQMRP AMA PRMPMYPPG GLGQQ+FYGQ PA++ Sbjct 379 LYVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQPQPAML 438 Query 181 TPQPGFGYQQQLVPGMR------PNFFMPMVqpgqqnqrpggrrsgAGpmqqtqqplpfm 342 PQ GFGYQQQLVPGMR PNFFMPMVQ GQQ QRPGGRR GA P+QQ QQP+P M Sbjct 439 PPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGGAVPLQQGQQPVPLM 498 Query 343 qpqmlpKGRVYRYPPGRNMTDVPISGVPGGMLPVPYEVGGMPFRDAAFSQPMTTGA 510 Q QM P+GR YRYPPGR + DV GV GGM +PY++GGMP RDA QP+ GA Sbjct 499 QQQMFPRGRGYRYPPGRGLPDVAFPGVGGGMFSIPYDMGGMPVRDAGIVQPIPVGA 554 >gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus] Length=649 Score = 188 bits (478), Expect = 9e-48 Identities = 116/177 (65%), Positives = 131/177 (74%), Gaps = 9/177 (5%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPR-MPMYPPGAAGLGQQLFYGQGPPAI 177 LYVALAQRKE+R ARLQAQFSQM+P AMA PR MPMYPPG G+GQQ+FYGQ PP I Sbjct 381 LYVALAQRKEDRIARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTI 440 Query 178 ITPQPGFGYQQQLVPGMR------PNFFMPMVqpgqqnqrpggrrsgAGpmqqtqqplpf 339 I+ QPGFGYQQQL+PGMR PNFF+PMV Q Q AG +QQTQQP+P Sbjct 441 ISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMV--QQGQQGQRSGGRRAGAIQQTQQPVPL 498 Query 340 mqpqmlpKGRVYRYPPGRNMTDVPISGVPGGMLPVPYEVGGMPFRDAAFSQPMTTGA 510 MQ QMLP+GRVYRYPPGR + D+P+ GV GGM VPYE+GGMP RDA QP+ GA Sbjct 499 MQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGA 555 >gi|106879567|emb|CAJ38367.1| polyA-binding protein [Plantago major] Length=314 Score = 185 bits (469), Expect = 9e-47 Identities = 121/177 (68%), Positives = 134/177 (75%), Gaps = 10/177 (5%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYVALAQRKEERRARLQAQFSQMRP AM P PRMPMYPPGA G+GQQLFYGQGPPA+I Sbjct 46 LYVALAQRKEERRARLQAQFSQMRPVAMPPSIAPRMPMYPPGAPGIGQQLFYGQGPPAMI 105 Query 181 TPQPGFGYQQQLVPGMR------PNFFMPMVqpgqqnqrpggrrsgAGpmqqtqqplpfm 342 Q GFGYQQQLVPGMR PNFFMPMV Q + G R G GPMQQ QQP+P M Sbjct 106 PSQAGFGYQQQLVPGMRPGGTPMPNFFMPMV-QQGQQGQRPGGRRGGGPMQQAQQPVPVM 164 Query 343 qpqmlpKGRVYRYPPGRNMTDVPISGVPGGMLPVPYEVGGMPFRD-AAFSQPMTTGA 510 Q QM+P+GR+YR+PPGRN+ DVP++G GGM VPY++ GM RD AA QPM A Sbjct 165 QQQMMPRGRMYRFPPGRNVPDVPMTG--GGMFSVPYDMTGMLPRDAAAIPQPMPVTA 219 >gi|115477976|ref|NP_001062583.1| Gene info Os09g0115400 [Oryza sativa (japonica cultivar-group)] gi|46389987|dbj|BAD16229.1| Gene info putative poly(A)-binding protein [Oryza sativa (japonica cultivar-group)] gi|113630816|dbj|BAF24497.1| Gene info Os09g0115400 [Oryza sativa (japonica cultivar-group)] Length=662 Score = 184 bits (468), Expect = 1e-46 Identities = 112/176 (63%), Positives = 126/176 (71%), Gaps = 8/176 (4%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYVALAQRKE+R+ARLQAQFSQ+RP +AP GPRMPM+PPG G+GQQLFYGQ PPA I Sbjct 392 LYVALAQRKEDRKARLQAQFSQLRPVPLAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFI 451 Query 181 TPQPGFGYQQQLVPGMR------PNFFMPMVqpgqqnqrpggrrsgAGpmqqtqqplpfm 342 QPGFG+QQ L+PGMR PNF MPMVQ GQQ QRP GRR+GAG MQQ Sbjct 452 NTQPGFGFQQPLMPGMRPGAGPMPNFIMPMVQQGQQPQRPAGRRAGAGGMQQPMPMGQQQ 511 Query 343 qpqmlpKGRVYRYPPGRNMTDVPISGVPGGMLPVPYEVGGMPFRDAAFSQPMTTGA 510 GR YRYP GR M D + GV GG++P PYE+GGMP RDAA SQP+ GA Sbjct 512 MMARG--GRGYRYPTGRGMPDPAMHGVGGGVMPSPYEMGGMPMRDAAASQPVPIGA 565 >gi|115475838|ref|NP_001061515.1| Gene info Os08g0314800 [Oryza sativa (japonica cultivar-group)] gi|35215045|dbj|BAC92404.1| Gene info putative polyadenylate-binding protein [Oryza sativa (japonica cultivar-group)] gi|35215184|dbj|BAC92537.1| Gene info putative polyadenylate-binding protein [Oryza sativa (japonica cultivar-group)] gi|113623484|dbj|BAF23429.1| Gene info Os08g0314800 [Oryza sativa (japonica cultivar-group)] Length=660 Score = 166 bits (420), Expect = 5e-41 Identities = 105/176 (59%), Positives = 116/176 (65%), Gaps = 8/176 (4%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYVALAQRKEERRARLQAQFSQMRP M P PRMPMYPPG G+GQQLFYGQ PPA + Sbjct 392 LYVALAQRKEERRARLQAQFSQMRPMVMPPSVAPRMPMYPPGVPGVGQQLFYGQPPPAFV 451 Query 181 TPQPGFGYQQQLVPGMR------PNFFMPMVqpgqqnqrpggrrsgAGpmqqtqqplpfm 342 PQPGFG+QQ L+PGMR PNF MPMVQ GQQ QRP GRR+G G +QQ Sbjct 452 NPQPGFGFQQHLIPGMRPSVGPIPNFVMPMVQQGQQPQRPAGRRAGTGGIQQPMPMGHQQ 511 Query 343 qpqmlpKGRVYRYPPGRNMTDVPISGVPGGMLPVPYEVGGMPFRDAAFSQPMTTGA 510 +G YRY GR M D GV GG++P PYE+G MP DA + GA Sbjct 512 MLPRGSRGG-YRYASGRGMPDNAFRGV-GGLVPSPYEMGRMPLSDAGAPPQVPIGA 565 >gi|92888900|gb|ABE89613.1| polyadenylate binding protein, human types 1, 2, 3, 4 family [Medicago truncatula] Length=647 Score = 165 bits (417), Expect = 1e-40 Identities = 101/173 (58%), Positives = 120/173 (69%), Gaps = 11/173 (6%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYVA+AQRKE+RRARLQAQFSQMRP A+ P PRMP+YPPG GLGQQ YGQGPPA++ Sbjct 385 LYVAVAQRKEDRRARLQAQFSQMRPVAITPSVAPRMPLYPPGTPGLGQQFMYGQGPPAMM 444 Query 181 TPQPGFGYQQQLVPGMR------PNFFMPMVqpgqqnqrpggrrsgAGpmqqtqqplpfm 342 PQ GFGYQQQLVPGMR P++F+PMV Q Q GP QQ Q +P M Sbjct 445 PPQAGFGYQQQLVPGMRPGGGPMPSYFVPMV--QQGQQGQRPGGRRGGPGQQPPQQVPMM 502 Query 343 qpqmlpKGRVYRYPPGR-NMTDVPISGVPGGMLPVPYEVGGMPFRDAAFSQPM 498 Q QMLP+ RVYRYPPGR N+ D P+ + GGM+ Y++GG+P RD P+ Sbjct 503 QQQMLPRQRVYRYPPGRSNIQDAPVQNIGGGMM--SYDMGGLPLRDVVPPMPI 553 >gi|115459296|ref|NP_001053248.1| Gene info Os04g0504800 [Oryza sativa (japonica cultivar-group)] gi|32490269|emb|CAE05558.1| Gene info OSJNBb0116K07.11 [Oryza sativa (japonica cultivar-group)] gi|113564819|dbj|BAF15162.1| Gene info Os04g0504800 [Oryza sativa (japonica cultivar-group)] Length=659 Score = 161 bits (408), Expect = 1e-39 Identities = 110/170 (64%), Positives = 124/170 (72%), Gaps = 10/170 (5%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYVA AQRKE+R+A LQAQFSQ+RP M P PR+PMYPP A LGQQLFYGQ PPAI+ Sbjct 391 LYVAFAQRKEDRKAMLQAQFSQVRPVPMTPSMAPRLPMYPP-MAPLGQQLFYGQAPPAIM 449 Query 181 TPQPGFGYQQQLVPGMR------PNFFMPMVqpgqqnqrpggrrsgAGpmqqtqqplpfm 342 PQPGFG+QQQLVPGMR PN+F+P+VQ GQQ RPG RRSGAG Q QQ Sbjct 450 PPQPGFGFQQQLVPGMRPGGAHMPNYFVPVVQQGQQGPRPGIRRSGAG-SAQGQQSAQPF 508 Query 343 qpqmlpKGRVYRYPPGRNMTDV-PISGVPGGMLPVPYEVGGMPFRDAAFS 489 Q QMLP+GRVYRYPP NM DV P+ GV GGM+ Y++GG P RDA S Sbjct 509 QQQMLPRGRVYRYPPAHNMPDVPPMPGVAGGMIQ-SYDMGGFPVRDAGLS 557 >gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa (japonica cultivar-group)] Length=657 Score = 161 bits (408), Expect = 1e-39 Identities = 110/170 (64%), Positives = 124/170 (72%), Gaps = 10/170 (5%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYVA AQRKE+R+A LQAQFSQ+RP M P PR+PMYPP A LGQQLFYGQ PPAI+ Sbjct 389 LYVAFAQRKEDRKAMLQAQFSQVRPVPMTPSMAPRLPMYPP-MAPLGQQLFYGQAPPAIM 447 Query 181 TPQPGFGYQQQLVPGMR------PNFFMPMVqpgqqnqrpggrrsgAGpmqqtqqplpfm 342 PQPGFG+QQQLVPGMR PN+F+P+VQ GQQ RPG RRSGAG Q QQ Sbjct 448 PPQPGFGFQQQLVPGMRPGGAHMPNYFVPVVQQGQQGPRPGIRRSGAG-SAQGQQSAQPF 506 Query 343 qpqmlpKGRVYRYPPGRNMTDV-PISGVPGGMLPVPYEVGGMPFRDAAFS 489 Q QMLP+GRVYRYPP NM DV P+ GV GGM+ Y++GG P RDA S Sbjct 507 QQQMLPRGRVYRYPPAHNMPDVPPMPGVAGGMIQ-SYDMGGFPVRDAGLS 555 >gi|1737492|gb|AAB38974.1| UniGene infoGene info poly(A)-binding protein [Triticum aestivum] Length=651 Score = 157 bits (396), Expect = 3e-38 Identities = 108/176 (61%), Positives = 121/176 (68%), Gaps = 10/176 (5%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYVALAQRKE+R+ARLQAQFSQMRP MA GPRM M PPG +GQQ+FYGQ PPA I Sbjct 384 LYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVP-VGQQMFYGQ-PPAFI 441 Query 181 TPQPGFGYQQQLVPGMR------PNFFMPMVqpgqqnqrpggrrsgAGpmqqtqqplpfm 342 PQPGFG+QQ +PGMR PNF MPMVQ GQQ QRP GRR+GAG MQQ+ Q Sbjct 442 NPQPGFGFQQPFMPGMRPGGAPMPNFMMPMVQQGQQPQRPAGRRAGAGGMQQSMQMGQQQ 501 Query 343 qpqmlpKGRVYRYPPGRNMTDVPISGVPGGMLPVPYEVGGMPFRDAAFSQPMTTGA 510 GR YRY GR M D + GV GG++ PYE+GGMP RDA SQP+ GA Sbjct 502 MLGRGG-GRGYRYQTGRGMPDPAMHGV-GGVMTSPYEMGGMPMRDAGESQPVPIGA 555 >gi|15227815|ref|NP_179916.1| UniGene infoGene info PAB4; RNA binding / translation initiation factor [Arabidopsis thaliana] gi|2642429|gb|AAB87097.1| Gene info putative poly(A) binding protein [Arabidopsis thaliana] gi|15292851|gb|AAK92796.1| UniGene infoGene info putative poly(A) binding protein [Arabidopsis thaliana] gi|19310779|gb|AAL85120.1| UniGene infoGene info putative poly(A) binding protein [Arabidopsis thaliana] Length=662 Score = 154 bits (389), Expect = 2e-37 Identities = 117/172 (68%), Positives = 132/172 (76%), Gaps = 12/172 (6%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYVALAQRKEERRA+LQAQFSQMRP A P GPRMP++ GA GLGQQ+FYGQGPP II Sbjct 398 LYVALAQRKEERRAKLQAQFSQMRP-AFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPII 456 Query 181 TPQPGFGYQQQLVPGMRPNFF-MPMVqpgqqnqrpggrrsgAG-pmqqtqqplpfmqpqm 354 QPGFGYQ QLVPGMRP FF PM+QPGQQ RPGGRRSG G Q QQP+P+MQPQM Sbjct 457 PHQPGFGYQPQLVPGMRPAFFGGPMMQPGQQGPRPGGRRSGDGPMRHQHQQPMPYMQPQM 516 Query 355 lpKGRVYRYPP-GRNMTDVPISGVPGGMLPVPYEVGGMPFRDAAFSQPMTTG 507 +P+GR YRYP GRNM D P +PGGM+PV Y++ MP +SQPM+ G Sbjct 517 MPRGRGYRYPSGGRNMPDGP---MPGGMVPVAYDMNVMP-----YSQPMSAG 560 >gi|13430610|gb|AAK25927.1|AF360217_1 UniGene info putative poly(A) binding protein [Arabidopsis thaliana] Length=662 Score = 154 bits (389), Expect = 2e-37 Identities = 117/172 (68%), Positives = 132/172 (76%), Gaps = 12/172 (6%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYVALAQRKEERRA+LQAQFSQMRP A P GPRMP++ GA GLGQQ+FYGQGPP II Sbjct 398 LYVALAQRKEERRAKLQAQFSQMRP-AFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPII 456 Query 181 TPQPGFGYQQQLVPGMRPNFF-MPMVqpgqqnqrpggrrsgAG-pmqqtqqplpfmqpqm 354 QPGFGYQ QLVPGMRP FF PM+QPGQQ RPGGRRSG G Q QQP+P+MQPQM Sbjct 457 PHQPGFGYQPQLVPGMRPAFFGGPMMQPGQQGPRPGGRRSGDGPMRHQHQQPMPYMQPQM 516 Query 355 lpKGRVYRYPP-GRNMTDVPISGVPGGMLPVPYEVGGMPFRDAAFSQPMTTG 507 +P+GR YRYP GRNM D P +PGGM+PV Y++ MP +SQPM+ G Sbjct 517 MPRGRGYRYPSGGRNMPDGP---MPGGMVPVAYDMNVMP-----YSQPMSAG 560 >gi|18402769|ref|NP_564554.1| UniGene infoGene info PAB8; RNA binding / translation initiation factor [Arabidopsis thaliana] gi|10120431|gb|AAG13056.1|AC011807_15 Gene info Putative Poly-A Binding Protein [Arabidopsis thaliana] gi|13877633|gb|AAK43894.1|AF370517_1 UniGene infoGene info Putative Poly-A Binding Protein [Arabidopsis thaliana] gi|17978685|gb|AAL47336.1| UniGene infoGene info putative Poly-A Binding Protein [Arabidopsis thaliana] Length=671 Score = 152 bits (385), Expect = 5e-37 Identities = 107/180 (59%), Positives = 123/180 (68%), Gaps = 18/180 (10%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYVALAQRKE+R+ARLQAQFSQMRP M P GPRM MYPPG +GQQLFYGQGPPA+I Sbjct 397 LYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPAMI 456 Query 181 TPQPGFGYQQQLVPGMR------PNFFMPMV-----qpgqqnqrpggrrsgAGpmqqtqq 327 PQPGFGYQQQLVPGMR PNFFMPM+ Q QQ Q+ G + Q QQ Sbjct 457 -PQPGFGYQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQQQQQQQRPGGGRRGALPQPQQ 515 Query 328 plpfmqpqmlpKGRVYRYPPGRNMTDVPISGVPGGMLPVPYEV---GGMPFRDAAFSQPM 498 P P MQ QM P+GR+YRYP R++ +P G ML VPY+V GG+ RD+ SQP+ Sbjct 516 PSPMMQQQMHPRGRMYRYPQ-RDVNTMP--GPTQNMLSVPYDVSSGGGVHHRDSPTSQPV 572 >gi|19347816|gb|AAL86321.1| UniGene info putative poly(A)-binding protein [Arabidopsis thaliana] Length=613 Score = 148 bits (373), Expect = 1e-35 Identities = 97/177 (54%), Positives = 117/177 (66%), Gaps = 29/177 (16%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYVA+AQRKE+RR RLQAQFSQ+RP AM P GPRMP+YPPG G+GQQ+FYGQ PPA+I Sbjct 372 LYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMI 431 Query 181 TPQPGFGYQQQLVPGMR------PNFFMPMVqpgqqnqrpggrrsgAGpmqqtqqplpfm 342 PQPG+GYQQQLVPGMR P+FFMPMV Q Q+ G G +Q +QQ P M Sbjct 432 PPQPGYGYQQQLVPGMRPGGGPVPSFFMPMV---QPQQQRPGGGRRPGGIQHSQQQNPMM 488 Query 343 qpqmlpKGRVYRYPPGRNMT-DVPISGVPGGMLPVPYEVGGMPFRDAAFSQPMTTGA 510 Q QM P+GR++RYP GR + DVP PY++G + P+T GA Sbjct 489 QQQMHPRGRMFRYPQGRGGSGDVP-----------PYDMGN--------NMPLTIGA 526 >gi|30689921|ref|NP_195137.2| UniGene infoGene info PAB2 (POLY(A)-BINDING PROTEIN 2); RNA binding [Arabidopsis thaliana] Length=443 Score = 148 bits (373), Expect = 1e-35 Identities = 97/177 (54%), Positives = 117/177 (66%), Gaps = 29/177 (16%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYVA+AQRKE+RR RLQAQFSQ+RP AM P GPRMP+YPPG G+GQQ+FYGQ PPA+I Sbjct 202 LYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMI 261 Query 181 TPQPGFGYQQQLVPGMR------PNFFMPMVqpgqqnqrpggrrsgAGpmqqtqqplpfm 342 PQPG+GYQQQLVPGMR P+FFMPMV Q Q+ G G +Q +QQ P M Sbjct 262 PPQPGYGYQQQLVPGMRPGGGPVPSFFMPMV---QPQQQRPGGGRRPGGIQHSQQQNPMM 318 Query 343 qpqmlpKGRVYRYPPGRNMT-DVPISGVPGGMLPVPYEVGGMPFRDAAFSQPMTTGA 510 Q QM P+GR++RYP GR + DVP PY++G + P+T GA Sbjct 319 QQQMHPRGRMFRYPQGRGGSGDVP-----------PYDMGN--------NMPLTIGA 356 >gi|1171978|sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly(A)-binding protein 2) (PABP 2) gi|304109|gb|AAA61780.1| UniGene info poly(A)-binding protein gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana] gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana] gi|26983870|gb|AAN86187.1| UniGene info putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis thaliana] Length=629 Score = 148 bits (373), Expect = 1e-35 Identities = 97/177 (54%), Positives = 117/177 (66%), Gaps = 29/177 (16%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYVA+AQRKE+RR RLQAQFSQ+RP AM P GPRMP+YPPG G+GQQ+FYGQ PPA+I Sbjct 388 LYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMI 447 Query 181 TPQPGFGYQQQLVPGMR------PNFFMPMVqpgqqnqrpggrrsgAGpmqqtqqplpfm 342 PQPG+GYQQQLVPGMR P+FFMPMV Q Q+ G G +Q +QQ P M Sbjct 448 PPQPGYGYQQQLVPGMRPGGGPVPSFFMPMV---QPQQQRPGGGRRPGGIQHSQQQNPMM 504 Query 343 qpqmlpKGRVYRYPPGRNMT-DVPISGVPGGMLPVPYEVGGMPFRDAAFSQPMTTGA 510 Q QM P+GR++RYP GR + DVP PY++G + P+T GA Sbjct 505 QQQMHPRGRMFRYPQGRGGSGDVP-----------PYDMGN--------NMPLTIGA 542 >gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max] Length=630 Score = 140 bits (352), Expect = 4e-33 Identities = 95/157 (60%), Positives = 111/157 (70%), Gaps = 8/157 (5%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYVALAQRKE+RRARLQAQFSQ RP A+ P+ PRMP+YP GA +GQQ YGQ PA I Sbjct 376 LYVALAQRKEDRRARLQAQFSQSRPAAITPNVSPRMPLYPLGAPAIGQQFLYGQAAPATI 435 Query 181 TPQPGFGYQQQLVPGMR----PNFFMPMVqpgqqnqrpggrrsgAGpmqqtqqplpfmqp 348 PQ FGYQQ VPGMR PNF++P+V Q + G G+GPMQQ QQPLP M Sbjct 436 -PQAAFGYQQHFVPGMRPGGAPNFYVPLV-QQGQQGQRPGGHRGSGPMQQLQQPLPLMHQ 493 Query 349 qmlpKGRVYRYPPGRNMTDVPISGVPGGMLPVPYEVG 459 QMLP+G VYRYP G NM ++ ++GVPGGM V Y +G Sbjct 494 QMLPRGHVYRYPSGSNMQNIQLAGVPGGM--VTYGIG 528 >gi|93359570|gb|ABF13311.1| poly-A binding protein [Phaseolus vulgaris] Length=172 Score = 136 bits (343), Expect = 4e-32 Identities = 68/91 (74%), Positives = 74/91 (81%), Gaps = 7/91 (7%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYV LAQRKE+RRARLQAQF+QMRP M P GPR+PMYPPG G+GQQ+FY QGPPAII Sbjct 46 LYVTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQIFY-QGPPAII 104 Query 181 TPQPGFGYQQQLVPGMR------PNFFMPMV 255 QPGFGYQQQLVPGMR PNFF+PMV Sbjct 105 PSQPGFGYQQQLVPGMRPGAAPVPNFFVPMV 135 >gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa (japonica cultivar-group)] Length=456 Score = 107 bits (266), Expect = 3e-23 Identities = 51/65 (78%), Positives = 53/65 (81%), Gaps = 0/65 (0%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYVALAQRKEERRARLQAQFSQMRP M P PRMPMYPPG G+GQQLFYGQ PPA + Sbjct 392 LYVALAQRKEERRARLQAQFSQMRPMVMPPSVAPRMPMYPPGVPGVGQQLFYGQPPPAFV 451 Query 181 TPQPG 195 PQ G Sbjct 452 NPQLG 456 >gi|5007080|gb|AAD37807.1| poly(A)-binding protein [Oryza sativa] Length=183 Score = 103 bits (257), Expect = 4e-22 Identities = 48/64 (75%), Positives = 54/64 (84%), Gaps = 0/64 (0%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYVALAQRKE+R+ARLQAQFSQ+RP +AP GPRMPM+PPG G+GQQLFYGQ PPA I Sbjct 119 LYVALAQRKEDRKARLQAQFSQLRPVPLAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFI 178 Query 181 TPQP 192 QP Sbjct 179 NTQP 182 >gi|92877410|gb|ABE84528.1| Polyadenylate-binding protein/Hyperplastic disc protein; Anthranilate synthase component I and chorismate binding protein [Medicago truncatula] Length=220 Score = 96.7 bits (239), Expect = 4e-20 Identities = 72/123 (58%), Positives = 80/123 (65%), Gaps = 9/123 (7%) Frame = +1 Query 82 MAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAIITPQPGFGYQQQLVPGMR------PNFF 243 MAP PR+P YP G G+GQQ+ YGQ PPA I+ Q GFGY QQLVPGMR PNFF Sbjct 1 MAPI-APRLPFYPAGVPGMGQQIMYGQAPPAFIS-QAGFGYPQQLVPGMRPGGAPMPNFF 58 Query 244 MPMVqpgqqnqrpggrrsgAGpmqqtqqplpfmqpqmlpKGRVYRYPPGRNMTDVPISGV 423 MPMV Q + G R GA PMQQ LP MQ QM P+GRVYRYP GRN +P+ GV Sbjct 59 MPMV-QQGQQGQRPGGRRGASPMQQLPHSLPMMQQQMHPRGRVYRYPTGRNPQGIPMPGV 117 Query 424 PGG 432 GG Sbjct 118 AGG 120 >gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis] Length=638 Score = 95.5 bits (236), Expect = 1e-19 Identities = 54/95 (56%), Positives = 65/95 (68%), Gaps = 13/95 (13%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMP----MYPPGAAGLGQQLFYGQGP 168 LYVALAQRKEERRARLQAQF+QM+ +AP+ P P MY PG G+G Q+FYGQ Sbjct 377 LYVALAQRKEERRARLQAQFAQMQ--IVAPNAPPMAPNPPSMYHPGPQGMGHQMFYGQPA 434 Query 169 PAIITPQP-GFGYQQQLVPGMR------PNFFMPM 252 P ++ Q GFGYQQ +VP MR PN+FMP+ Sbjct 435 PGLLPSQANGFGYQQPMVPTMRPTSAGVPNYFMPV 469 >gi|14029147|gb|AAK51123.1| polyadenylated mRNA-binding protein 2 [Anemia phyllitidis] Length=472 Score = 94.7 bits (234), Expect = 2e-19 Identities = 51/94 (54%), Positives = 66/94 (70%), Gaps = 9/94 (9%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMR-PGAMAPD-DGPRMPMYPPGAAGLGQQLFYGQGPPA 174 LYVA+AQRK+ERRA+LQAQF+Q+R A P +G P+YPP +GQQ++YGQ P Sbjct 203 LYVAVAQRKDERRAKLQAQFAQLRNVVANVPQMNGSPGPLYPPRPPAMGQQVYYGQPPHG 262 Query 175 IITPQP-GFGYQQQLVPGMR------PNFFMPMV 255 ++ PQP GFGYQ +VPGMR PN+F+P V Sbjct 263 LLPPQPSGFGYQHPMVPGMRPGGPQMPNYFLPAV 296 >gi|166786|gb|AAA32832.1| poly(A)-binding protein Length=668 Score = 73.9 bits (180), Expect = 3e-13 Identities = 45/94 (47%), Positives = 57/94 (60%), Gaps = 11/94 (11%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMR-PGAMAPDDGPRMPM--YPPGA--AGLGQQLFYGQG 165 LYVALAQRKEER+A LQ+ F+Q+R PG M+P P +PPG +G +F G Sbjct 398 LYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHN 457 Query 166 PPAIITPQP-GFGYQQQLVPGMR-----PNFFMP 249 ++ QP G+GYQ Q +PGMR PNF MP Sbjct 458 GQGLVPSQPMGYGYQVQFMPGMRPGAGPPNFMMP 491 >gi|15217573|ref|NP_177322.1| UniGene infoGene info PAB5 (POLY(A)-BINDING PROTEIN); RNA binding [Arabidopsis thaliana] gi|21542448|sp|Q05196|PABP5_ARATH Gene info Polyadenylate-binding protein 5 (Poly(A)-binding protein 5) (PABP 5) gi|7239504|gb|AAF43230.1|AC012654_14 Gene info Identical to the polyadenylate-binding protein 5 (PAB5) from Arabidopsis thaliana gb|M97657 Length=668 Score = 73.9 bits (180), Expect = 3e-13 Identities = 45/94 (47%), Positives = 57/94 (60%), Gaps = 11/94 (11%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMR-PGAMAPDDGPRMPM--YPPGA--AGLGQQLFYGQG 165 LYVALAQRKEER+A LQ+ F+Q+R PG M+P P +PPG +G +F G Sbjct 398 LYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHN 457 Query 166 PPAIITPQP-GFGYQQQLVPGMR-----PNFFMP 249 ++ QP G+GYQ Q +PGMR PNF MP Sbjct 458 GQGLVPSQPMGYGYQVQFMPGMRPGAGPPNFMMP 491 >gi|33504432|emb|CAD43730.1| putative poly(A)-binding protein [Mangifera indica] Length=130 Score = 70.5 bits (171), Expect = 3e-12 Identities = 35/47 (74%), Positives = 38/47 (80%), Gaps = 0/47 (0%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLG 141 L+VALAQRKE+RRARLQAQFSQ+RP AMAP RMPMYPP G G Sbjct 84 LFVALAQRKEDRRARLQAQFSQIRPVAMAPSVASRMPMYPPCGPGHG 130 >gi|33504434|emb|CAD44189.1| putative poly(A) binding protein [Mangifera indica] Length=130 Score = 70.5 bits (171), Expect = 3e-12 Identities = 36/47 (76%), Positives = 37/47 (78%), Gaps = 0/47 (0%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLG 141 LYVALAQRKE RRARLQAQFSQ+RP AMAP RMPMYPP G G Sbjct 84 LYVALAQRKEVRRARLQAQFSQIRPVAMAPSVASRMPMYPPCGPGHG 130 >gi|23197794|gb|AAN15424.1| UniGene info Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis thaliana] Length=379 Score = 69.3 bits (168), Expect = 8e-12 Identities = 43/92 (46%), Positives = 57/92 (61%), Gaps = 15/92 (16%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMR-PGAMAPDDGPRMPMYPPGA--AGLGQQLFYGQGPP 171 LY+ALAQRKE+RRA LQA FSQ+R PG M+ +PPG G Q ++ GQ Sbjct 121 LYIALAQRKEDRRAHLQALFSQIRAPGPMSGFH------HPPGGPMPGPPQHMYVGQNGA 174 Query 172 AIITPQP-GFGYQQQLVPGMRP-----NFFMP 249 +++ QP G+G+Q Q +PGMRP NF +P Sbjct 175 SMVPSQPIGYGFQPQFMPGMRPGSGPGNFIVP 206 >gi|9930616|gb|AAG02117.1|AF293840_1 UniGene info poly(A) binding protein [Arabidopsis thaliana] Length=660 Score = 69.3 bits (168), Expect = 8e-12 Identities = 43/92 (46%), Positives = 57/92 (61%), Gaps = 15/92 (16%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMR-PGAMAPDDGPRMPMYPPGA--AGLGQQLFYGQGPP 171 LY+ALAQRKE+RRA LQA FSQ+R PG M+ +PPG G Q ++ GQ Sbjct 402 LYIALAQRKEDRRAHLQALFSQIRAPGPMSGFH------HPPGGPMPGPPQHMYVGQNGA 455 Query 172 AIITPQP-GFGYQQQLVPGMRP-----NFFMP 249 +++ QP G+G+Q Q +PGMRP NF +P Sbjct 456 SMVPSQPIGYGFQPQFMPGMRPGSGPGNFIVP 487 >gi|15219945|ref|NP_173690.1| UniGene infoGene info PAB3 (POLY(A) BINDING PROTEIN 3); RNA binding [Arabidopsis thaliana] gi|12643628|sp|O64380|PABP3_ARATH Gene info Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP 3) gi|2505869|emb|CAA72907.1| Gene info polyA binding protein PAB3 [Arabidopsis thaliana] gi|15450820|gb|AAK96681.1| UniGene infoGene info Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis thaliana] Length=660 Score = 69.3 bits (168), Expect = 8e-12 Identities = 43/92 (46%), Positives = 57/92 (61%), Gaps = 15/92 (16%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMR-PGAMAPDDGPRMPMYPPGA--AGLGQQLFYGQGPP 171 LY+ALAQRKE+RRA LQA FSQ+R PG M+ +PPG G Q ++ GQ Sbjct 402 LYIALAQRKEDRRAHLQALFSQIRAPGPMSGFH------HPPGGPMPGPPQHMYVGQNGA 455 Query 172 AIITPQP-GFGYQQQLVPGMRP-----NFFMP 249 +++ QP G+G+Q Q +PGMRP NF +P Sbjct 456 SMVPSQPIGYGFQPQFMPGMRPGSGPGNFIVP 487 >gi|34015127|gb|AAQ56324.1| putative poly(A)-binding protein [Oryza sativa (japonica cultivar-group)] Length=266 Score = 67.8 bits (164), Expect = 2e-11 Identities = 56/115 (48%), Positives = 65/115 (56%), Gaps = 8/115 (6%) Frame = +1 Query 184 PQPGFGYQQQLVPGMR------PNFFMPMVqpgqqnqrpggrrsgAGpmqqtqqplpfmq 345 P PGFG+QQ L+PGMR PNF MPMVQ GQQ QRP GRR+G G +QQ Sbjct 59 PMPGFGFQQHLIPGMRPSVGPIPNFVMPMVQQGQQPQRPAGRRAGTGGIQQPMPMGHQQM 118 Query 346 pqmlpKGRVYRYPPGRNMTDVPISGVPGGMLPVPYEVGGMPFRDAAFSQPMTTGA 510 +G YRY GR M D GV GG++P PYE+G MP DA + GA Sbjct 119 LPRGSRGG-YRYASGRGMPDNAFRGV-GGLVPSPYEMGRMPLSDAGAPPQVPIGA 171 >gi|3287682|gb|AAC25510.1|AAC25510 Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from A. thaliana. [Arabidopsis thaliana] Length=655 Score = 60.5 bits (145), Expect = 4e-09 Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 14/89 (15%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LY+ALAQRKE+RRA LQ + G P GP MP G Q ++ GQ +++ Sbjct 402 LYIALAQRKEDRRAHLQIRAPGPMSGFHHPPGGP-MP-------GPPQHMYVGQNGASMV 453 Query 181 TPQP-GFGYQQQLVPGMRP-----NFFMP 249 QP G+G+Q Q +PGMRP NF +P Sbjct 454 PSQPIGYGFQPQFMPGMRPGSGPGNFIVP 482 >gi|115468728|ref|NP_001057963.1| Gene info Os06g0589700 [Oryza sativa (japonica cultivar-group)] gi|113596003|dbj|BAF19877.1| Gene info Os06g0589700 [Oryza sativa (japonica cultivar-group)] Length=399 Score = 57.4 bits (137), Expect = 3e-08 Identities = 35/79 (44%), Positives = 45/79 (56%), Gaps = 12/79 (15%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRP-GAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAI 177 LYVA+AQRKEER+A L A F+++R MAP GP + + Q +G G PA+ Sbjct 142 LYVAVAQRKEERKAFLAAHFARVRALATMAPTLGPNIAPH---------QFNFGHGVPAL 192 Query 178 ITPQP--GFGYQQQLVPGM 228 P P GFG+Q VP M Sbjct 193 FPPPPPAGFGFQPNFVPNM 211 Score = 29.3 bits (64), Expect = 8.7 Identities = 13/20 (65%), Positives = 17/20 (85%), Gaps = 0/20 (0%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQF 60 LYVA AQ+K ER+A L+A+F Sbjct 39 LYVARAQKKSERQAELKAKF 58 >gi|50725435|dbj|BAD32907.1| putative polyadenylate-binding protein [Oryza sativa (japonica cultivar-group)] Length=670 Score = 57.4 bits (137), Expect = 3e-08 Identities = 35/79 (44%), Positives = 45/79 (56%), Gaps = 12/79 (15%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRP-GAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAI 177 LYVA+AQRKEER+A L A F+++R MAP GP + + Q +G G PA+ Sbjct 413 LYVAVAQRKEERKAFLAAHFARVRALATMAPTLGPNIAPH---------QFNFGHGVPAL 463 Query 178 ITPQP--GFGYQQQLVPGM 228 P P GFG+Q VP M Sbjct 464 FPPPPPAGFGFQPNFVPNM 482 Score = 29.3 bits (64), Expect = 8.7 Identities = 13/20 (65%), Positives = 17/20 (85%), Gaps = 0/20 (0%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQF 60 LYVA AQ+K ER+A L+A+F Sbjct 310 LYVARAQKKSERQAELKAKF 329 >gi|2213871|gb|AAB61594.1| poly(A)-binding protein [Mesembryanthemum crystallinum] Length=176 Score = 54.7 bits (130), Expect = 2e-07 Identities = 27/52 (51%), Positives = 37/52 (71%), Gaps = 2/52 (3%) Frame = +1 Query 361 KGRVYRYPPGRNMTDVPISGVPGGMLP-VPYEVGGMPFRDAAFSQPMTTGAS 513 +GR YRYPP R + D P+ GV GG+LP V Y++GGMP RD + + P+ T A+ Sbjct 29 RGR-YRYPPARGLPDAPLPGVTGGVLPGVQYDMGGMPIRDLSPTVPVGTLAT 79 >gi|62321231|dbj|BAD94406.1| UniGene info putative poly(A) binding protein [Arabidopsis thaliana] Length=154 Score = 47.0 bits (110), Expect = 4e-05 Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 9/50 (18%) Frame = +1 Query 361 KGRVYRYPPG-RNMTDVPISGVPGGMLPVPYEVGGMPFRDAAFSQPMTTG 507 +GR YRYP G RNM D P+ PGGM+PV Y++ MP +SQPM+ G Sbjct 11 RGRGYRYPSGGRNMPDGPM---PGGMVPVAYDMNVMP-----YSQPMSAG 52 >gi|115452253|ref|NP_001049727.1| Gene info Os03g0278500 [Oryza sativa (japonica cultivar-group)] gi|108707490|gb|ABF95285.1| Gene info polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed [Oryza sativa (japonica cultivar-group)] gi|113548198|dbj|BAF11641.1| Gene info Os03g0278500 [Oryza sativa (japonica cultivar-group)] Length=647 Score = 38.9 bits (89), Expect = 0.011 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 10/65 (15%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 LYVA+AQRKEERRA+L+ +F++ +A G P+ P G FY P + Sbjct 389 LYVAIAQRKEERRAKLEQRFAE-----LATMVGATSPVIP-----TGYPQFYFAHPSTHL 438 Query 181 TPQPG 195 PG Sbjct 439 PQSPG 443 >gi|15226539|ref|NP_179152.1| UniGene infoGene info unknown protein [Arabidopsis thaliana] gi|4335716|gb|AAD17394.1| Gene info putative poly(A) binding protein [Arabidopsis thaliana] Length=132 Score = 38.5 bits (88), Expect = 0.014 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 0/27 (0%) Frame = +1 Query 79 AMAPDDGPRMPMYPPGAAGLGQQLFYG 159 AM P GPRMP+YP G+ G+ + +FYG Sbjct 106 AMPPSVGPRMPIYPLGSPGIRKSMFYG 132 >gi|2935338|gb|AAC39368.1| UniGene info poly(A) binding protein RB47 [Chlamydomonas reinhardtii] Length=623 Score = 37.0 bits (84), Expect = 0.042 Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 16/90 (17%) Frame = +1 Query 1 LYVALAQRKEERRA-RLQAQF-SQMRPGAMAPDDGP---------RMPMYPPGAAGL--- 138 LYVALAQRK+ RRA +L+A ++M GAM+ P MP + PG G+ Sbjct 378 LYVALAQRKDVRRATQLEANMQARMGMGAMSRPPNPMAGMSPYPGAMPFFAPGPGGMAAG 437 Query 139 --GQQLFYGQGPPAIITPQPGFGYQQQLVP 222 + Y P P PG G + ++P Sbjct 438 PRAPGMMYPPMMPPRGMPGPGRGPRGPMMP 467 >gi|22329932|ref|NP_174676.2| UniGene infoGene info PAB1; RNA binding / translation initiation factor [Arabidopsis thaliana] Length=407 Score = 34.3 bits (77), Expect = 0.27 Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 24/93 (25%) Frame = +1 Query 1 LYVALAQRKEERRARLQAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAII 180 +YV+LAQ KE+ + LQ QF+ P +P P A L QQ Sbjct 293 IYVSLAQCKEQHKLHLQTQFNNPPP---SPHQQPIFSQVVAPATMLSQQ----------- 338 Query 181 TPQPGFGYQQQLVPGMR----------PNFFMP 249 TP G+ +Q + G R PNF +P Sbjct 339 TPLRGYNFQPYSMCGSRMPNSCPPISIPNFMVP 371 >gi|77553432|gb|ABA96228.1| retrotransposon protein, putative, unclassified [Oryza sativa (japonica cultivar-group)] Length=706 Score = 33.5 bits (75), Expect = 0.46 Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Frame = +3 Query 207 AATSSWHEAKLFHANGSARTAESAPRRQAIWSWPHATNTAATSLHAAT-DAS*GACLPLS 383 A ++ EA+L A S R AE+A RQA P T AAT+ AT D + GA PL Sbjct 350 AEETAREEARLRRAEESVREAEAAHARQAACQAPDPTPPAATTTSEATHDEAAGA--PLG 407 Query 384 PRSQHD 401 P D Sbjct 408 PDPSGD 413 >gi|886967|emb|CAA59340.1| low molecular weight glutenin [Triticum aestivum] Length=276 Score = 33.5 bits (75), Expect = 0.46 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Frame = +1 Query 49 QAQFSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAIITPQPGFGYQQQLVPGM 228 Q FSQ RP P +P PP + QQ Q PP + QP QQ +P + Sbjct 104 QPPFSQQRPPFSQQQQQPVLPQQPPFSQQQQQQPILPQQPPFSLHQQPVL--PQQQIPYV 161 Query 229 RPNFFMPM 252 +P+ + Sbjct 162 QPSILQQL 169 >gi|110559505|gb|ABG76007.1| low molecular weight glutenin subunit GF-2 [Triticum aestivum] Length=298 Score = 32.7 bits (73), Expect = 0.79 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 0/61 (0%) Frame = +1 Query 58 FSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAIITPQPGFGYQQQLVPGMRPN 237 F Q P + P+ P + QQ + Q ++ QP F QQQ V +P Sbjct 44 FPQQPPSSQQQQPFPQQPPFLQQQPSFSQQPLFSQKQQPVLPQQPAFSQQQQTVLPQQPA 103 Query 238 F 240 F Sbjct 104 F 104 >gi|56480766|gb|AAV92011.1| UniGene info low molecular weight glutenin [Triticum aestivum] Length=298 Score = 32.7 bits (73), Expect = 0.79 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 0/61 (0%) Frame = +1 Query 58 FSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAIITPQPGFGYQQQLVPGMRPN 237 F Q P + P+ P + QQ + Q ++ QP F QQQ V +P Sbjct 44 FPQQPPSSQQQQPFPQQPPFLQQQPSFSQQPLFSQKQQPVLPQQPAFSQQQQTVLPQQPA 103 Query 238 F 240 F Sbjct 104 F 104 >gi|56480764|gb|AAV92010.1| UniGene info low molecular weight glutenin [Triticum aestivum] Length=298 Score = 32.7 bits (73), Expect = 0.79 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 0/61 (0%) Frame = +1 Query 58 FSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAIITPQPGFGYQQQLVPGMRPN 237 F Q P + P+ P + QQ + Q ++ QP F QQQ V +P Sbjct 44 FPQQPPSSQQQQPFPQQPPFLQQQPSFSQQPLFSQKQQPVLPQQPAFSQQQQTVLPQQPA 103 Query 238 F 240 F Sbjct 104 F 104 >gi|56126399|gb|AAV75994.1| low molecular weight glutenin subunit [Thinopyrum ponticum x Triticum aestivum] Length=298 Score = 32.7 bits (73), Expect = 0.79 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 0/59 (0%) Frame = +1 Query 58 FSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAIITPQPGFGYQQQLVPGMRP 234 F Q P + P+ P + L QQ + Q ++ QP F QQQ V +P Sbjct 44 FPQQPPSSQQQQPFPQQPPFLQQQPSLSQQPLFSQKQQPVLPQQPAFSQQQQTVLPQQP 102 >gi|51493659|gb|AAU04842.1| low molecular weight glutenin subunit XJLMW-1347 [Triticum aestivum] Length=298 Score = 32.7 bits (73), Expect = 0.79 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 0/61 (0%) Frame = +1 Query 58 FSQMRPGAMAPDDGPRMPMYPPGAAGLGQQLFYGQGPPAIITPQPGFGYQQQLVPGMRPN 237 F Q P + P+ P + QQ + Q ++ QP F QQQ V +P Sbjct 44 FPQQPPSSQQQQPFPQQPPFLQQQPSFSQQPLFSQKQQPVLPQQPAFSQQQQTVLPQQPA 103 Query 238 F 240 F Sbjct 104 F 104
  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 417
Number of extensions: 9
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 531
Length of database: 101054579
Length adjustment: 106
Effective length of query: 425
Effective length of database: 71019585
Effective search space: 5042390535
Effective search space used: 5042390535
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 64 (29.3 bits)